KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:15 2014 Check: 00 .. Name: ENSTTRP00000014531/1-867 Len: 1364 Check: 314 Weight: 1.00 Name: ENSP00000386456/1-961 Len: 1364 Check: 3909 Weight: 1.00 Name: ENSBTAP00000012302/1-902 Len: 1364 Check: 227 Weight: 1.00 Name: BACU013742/1-1123 Len: 1364 Check: 8200 Weight: 1.00 Name: bmy_20850T0/1-783 Len: 1364 Check: 6837 Weight: 1.00 // 1 50 ENSTTRP00000014531/1-867 MKKFFDSRRE QGGSGLGSGS SGGGGSTSGL GSGYIGRVFG IGRQQVTVDE ENSP00000386456/1-961 MKKFFDSRRE QGGSGLGSGS SGGGGSTSGL GSGYIGRVFG IGRQQVTVDE ENSBTAP00000012302/1-902 ---------- ---------- ---------- ---------- ---------- BACU013742/1-1123 ---------- ---------- ---------- ---------- ---------- bmy_20850T0/1-783 MKKFFDSRRE QGGSGLGSGS SGGGGSTSGL GSGYIGRVFG IGRQQVTVDE 51 100 ENSTTRP00000014531/1-867 VLAEG----- ---------- ---------- ---------G FAIVFLVRTS ENSP00000386456/1-961 VLAEG----- ---------- ---------- ---------G FAIVFLVRTS ENSBTAP00000012302/1-902 ---------- ---------- ---------- ---------G FAIVFLVRTS BACU013742/1-1123 ---------- ---------- ---------- ---------- ---------- bmy_20850T0/1-783 VLAEGFGNQG FDLTIQERYR TWDMALEREH KVSQSEMCGG FAIVFLVRTS 101 150 ENSTTRP00000014531/1-867 NGMKCALKRM FVNNEHDLQV CKREIQIMRD LSGHKNIVGY IDSSINNVSS ENSP00000386456/1-961 NGMKCALKRM FVNNEHDLQV CKREIQIMRD LSGHKNIVGY IDSSINNVSS ENSBTAP00000012302/1-902 NGMKCALKRM FVNNEHDLQV CKREIQIMRD LSGHKNIVGY IDSSINSVSS BACU013742/1-1123 --MKCALKRM FVNNEHDLQV CKREIQIMRD LSGHKNIVGY IDSSINNVSS bmy_20850T0/1-783 NGMKCALKRM FVNNEHDLQV CKREIQIMRD LSGHKNIVGY IDSSINNVSS 151 200 ENSTTRP00000014531/1-867 GDVWEVLILM DFCRGGQVVN LMNQRLQTGF TENEVLQIFC DTCEAVACLH ENSP00000386456/1-961 GDVWEVLILM DFCRGGQVVN LMNQRLQTGF TENEVLQIFC DTCEAVARLH ENSBTAP00000012302/1-902 GDVWEVLILM DFCRGGQVVN LMNQRLQTGF TENEVLQIFC DTCEAVARLH BACU013742/1-1123 GDVWEVLILM DFCRGGQVVN LMNQRLQTGF TENEVLQIFC DTCEAVARLH bmy_20850T0/1-783 GDVWEVLILM DFCRGGQVVN LMNQRLQTGF TENEVLQIFC DTCEAVARLH 201 250 ENSTTRP00000014531/1-867 QCKTPIIHRD LKXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000386456/1-961 QCKTPIIHRD LKVENILLHD RGHYVLCDFG SATNKFQNPQ TEGVNAVEDE ENSBTAP00000012302/1-902 QCKTPIIHRD LKVENILLHD RGHYVLCDFG SATNKFQNPQ TEGVNAVEDE BACU013742/1-1123 QCKTPIIHRD LKVENILLHD RGHYVLCDFG SATNKFQNPQ TEGVNAVEDE bmy_20850T0/1-783 QCKTPIIHRD LKVENILLHD RGHYVLCDFG SATNKFQNPQ TEGVNAVEDE 251 300 ENSTTRP00000014531/1-867 XXXYTTLSYR APEMVNLYSG KIITTKADIW ALGCLLYKLC YFTLPFGESQ ENSP00000386456/1-961 IKKYTTLSYR APEMVNLYSG KIITTKADIW ALGCLLYKLC YFTLPFGESQ ENSBTAP00000012302/1-902 IKKYTTLSYR APEMVNLYSG KVITTKADIW ALGCLLYKLC YFTLPFGESQ BACU013742/1-1123 IKKYTTLSYR APEMVNLYSG KIITTKADIW ALGCLLYKLC YFTLPFGESQ bmy_20850T0/1-783 IKKYTTLSYR APEMVNLYSG KIITTKADIW ALGCLLYKLC YFTLPFGESQ 301 350 ENSTTRP00000014531/1-867 VAICDGNFTI PDNSRYSQDM HCLIRYMLEP DPD-RPDIYH VSYFSFKLLK ENSP00000386456/1-961 VAICDGNFTI PDNSRYSQDM HCLIRYMLEP DPDKRPDIYQ VSYFSFKLLK ENSBTAP00000012302/1-902 VAICDGNFTI PDNSRYSQDM HCLIRYMLEP DPDKRPDIYQ VSYFSFKLLK BACU013742/1-1123 VAICDGNFTI PDNSRYSQDM HCLIRYMLEP DPDKRPDIYQ VSYFSFKLLK bmy_20850T0/1-783 VAICDGNFTI PDNSRYSQDM HCLIRYMLEP DPDKRPDIYQ VSYFSFKLLK 351 400 ENSTTRP00000014531/1-867 KECPIPNXXK FSFNSIELPI PAKTSEAAAK KTQPKARLTD PIPTTETSIA ENSP00000386456/1-961 KECPIPNVQN SPIPA-KLPE PVKASEAAAK KTQPKARLTD PIPTTETSIA ENSBTAP00000012302/1-902 KECPIPNVQN SPIPT-KLPE PVKASEAAAK KTQPKARLTD PIPTTETSIA BACU013742/1-1123 KECPIPNVQN SPIPA-KLPE PVKASEAAAK KTQPKARLTD PIPTTETSIA bmy_20850T0/1-783 KECPIPNVQ- -------LPE PVKASEAAAK KTQPKARLTD PIPTTETSIA 401 450 ENSTTRP00000014531/1-867 PRQRPKAGQT QPNPGILPIQ PALTPRKRAT VQPPPQATGS SNQPGLLASV ENSP00000386456/1-961 PRQRPKAGQT QPNPGILPIQ PALTPRKRAT VQPPPQAAGS SNQPGLLASV ENSBTAP00000012302/1-902 PRQRPKAGQT QPNPGILPIQ PALTPRKRAT VQPPPQAAGS SNQPGLLASV BACU013742/1-1123 PRQRPKAGQT QPNPGILPIQ PALTPRKRAT VQPPPQATGF YS-------- bmy_20850T0/1-783 PRQRPKAGQT QPNPGILPIQ PALTPRKRAT VQPPPQATGS SNQPGLLASV 451 500 ENSTTRP00000014531/1-867 PQPKPQPPPS QPLPQSQPKQ PQAPPTPQQP PSTQAQGLPT QAQATPQHQQ ENSP00000386456/1-961 PQPKPQAPPS QPLPQTQAKQ PQAPPTPQQT PSTQAQGLPA QAQATPQHQQ ENSBTAP00000012302/1-902 PQPKTQPPPS QPLPQSQPKQ PQAPPTSQQP PSAPAQALPT QAQATPQHQQ BACU013742/1-1123 ------PPHS LPL------- ---------- --SPA----- ---------- bmy_20850T0/1-783 PQPKPQPPPS QPLPQPQPKQ PQAPPTPQQP ASTPAQGLPA QAQATPQHQQ 501 550 ENSTTRP00000014531/1-867 QLFLQQQQQQ QQ--QQQAAP PPAQQPAGTF YQQQQQQAQA QQXXXXXXXX ENSP00000386456/1-961 QLFLKQQQQQ QQ------PP PAQQQPAGTF YQ--QQQAQT QQFQAVHPAT ENSBTAP00000012302/1-902 QLFLKQQQQQ Q-------TA PPAQQPAGTF YQQPQQQAQA PQFQAVHPAA BACU013742/1-1123 ---------- ---------- ---------- ---------- -QFQAVHPAT bmy_20850T0/1-783 QLFLQQQQQQ QQQQQQQAAP PPAQQPAGTF YQQ-QQQAQA QQFQAVHPAT 551 600 ENSTTRP00000014531/1-867 XXXXXXXXXX XXXXXXXXXX XXXXX--XXX XXXXXXXXXX XXXXXXXXXX ENSP00000386456/1-961 QKPAIAQFPV VSQGGSQQQL MQNFYQQQQQ QQQQQQQQQL ATALH-QQQL ENSBTAP00000012302/1-902 QQPVIAQFPV VSQGSSQQQL IQNFY----- -QQQQQQQQL ATALH-QQQL BACU013742/1-1123 QQPAIAQFPV VAQGSSQQQL IQNFY----- -----QQQQL ATTLHQQQQL bmy_20850T0/1-783 QQPAIAQFPV VAQGSSQQQL IQNFY----- -----QQQQL ATTLHQQQQL 601 650 ENSTTRP00000014531/1-867 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXIQA PIRQQPKVQT ENSP00000386456/1-961 MTQQAALQQK PTMAAGQQPQ PQPAAAPQPA PAQEPA-IQA PVRQQPKVQT ENSBTAP00000012302/1-902 LTQQAALQQK TTAAAAPQPQ AQPAAAASPA PAQEPAQIQA PVRQQPKVQT BACU013742/1-1123 LTQQAALQQK TAVVALQQAQ AQPAAAPQSA PAQEPAQIQA PIRQQPKVQT bmy_20850T0/1-783 LTQQAALQQK TAVVALQQAQ AQPAAAPQPA PAQEPAQIQA PIRQQPKVQT 651 700 ENSTTRP00000014531/1-867 TPPPTIQGQK LGSLTPPSSP KAQRAGHRRI LSDVTHSAVF GVPASKSTQL ENSP00000386456/1-961 TPPPAVQGQK VGSLTPPSSP KTQRAGHRRI LSDVTHSAVF GVPASKSTQL ENSBTAP00000012302/1-902 TPPPTIQGQK LGSLTPPSSP KAQRAGHRRI LSDVTHSAVF GVPASKSTQL BACU013742/1-1123 TPPPTIQGQK LGSLTPPSSP KAQRAGHRRI LSDVTHSAVF GVPASKSTQL bmy_20850T0/1-783 TPPPTIQGQK LGSLTPPSSP KAQRAGHRRI LSDVTHSAVF GVPASKSTQL 701 750 ENSTTRP00000014531/1-867 LQAAAAEASL NKSKSATTTP SGSPRA-QQN VYNPSEGSTW NPFDDDNFSK ENSP00000386456/1-961 LQAAAAEASL NKSKSATTTP SGSPRTSQQN VYNPSEGSTW NPFDDDNFSK ENSBTAP00000012302/1-902 LQAAAAEASL NKSKSATTTP SGSPRASQQN VYNPSEGSTW NPFDDDNFSK BACU013742/1-1123 LQAAAAEASL NKSKSATTTP SGSPRASQQN VYNPSEGSTW NPFDDDNFSK bmy_20850T0/1-783 LQAAAAEASL NKSKSATTTP SGSPRASQQN VYNPSEGSTW NPFDDDNFSK 751 800 ENSTTRP00000014531/1-867 LTAEELLNKD FAKLGEGKHP EKLGGSAESL IPGFQPSQGD TFAASSFSAG ENSP00000386456/1-961 LTAEELLNKD FAKLGEGKHP EKLGGSAESL IPGFQSTQGD AFATTSFSAG ENSBTAP00000012302/1-902 LTAEELLNKD FAKLGEGKYP EKLGGSAESL IPGFQPTQGD AFAASSFSAG BACU013742/1-1123 LTAEELLNKD FAKLGEGKHP EKLGGSAESL IPGFQPTQGD TFAASSFSAG bmy_20850T0/1-783 LTAEELLNKD FAKLGEGKHP EKLGGSAESL IPGFQPTQGD TFAASSFSAG 801 850 ENSTTRP00000014531/1-867 TAEKRKGGQT VDSSLPLLSV SDPFIPLQVP DAPEKLIEGL KSPDTSLLLP ENSP00000386456/1-961 TAEKRKGGQT VDSGLPLLSV SDPFIPLQVP DAPEKLIEGL KSPDTSLLLP ENSBTAP00000012302/1-902 TAEKRKGGQT MDSSLPLLSV SDPFIPLQVP DAPEKLIEGL KSPDTSLLLP BACU013742/1-1123 TAEKRKGGQT VDSSLPLLSV SDPFIPLQVP DAPDLSIPIQ ISDHPDYLCE bmy_20850T0/1-783 TG-------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000014531/1-867 DLLPMTDPFG ---------- ---STSDAVI GKVIISVSSV MHDMCV---- ENSP00000386456/1-961 DLLPMTDPFG ---------- ---STSDAVI EKADVAVESL IPGLEPPVPQ ENSBTAP00000012302/1-902 DLLPMTDPFG ---------- ---STSDAVI EKADVAVESL IPGLEPPVPQ BACU013742/1-1123 E--PVTSRFG QKRMWQFTPS PPHSILRYNT EKADVAVESL IPGLEPPAAQ bmy_20850T0/1-783 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000014531/1-867 ---------- ---------- ---------- ---------- ---------- ENSP00000386456/1-961 RLPSQTESVT SNRTDSLTGE DSLLDCSLLS NPTTDLLEEF APTAISAPVH ENSBTAP00000012302/1-902 RLPSQTESVT SNRTDSLTGE DSLIDCSLLS NPTTDLLEEF APIAISAPAH BACU013742/1-1123 RLPSQTESVT SNRT------ ---------- ---------- ---------- bmy_20850T0/1-783 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000014531/1-867 -CFKNGNLVN R--------- ---------- ---------- ---------- ENSP00000386456/1-961 KAAEDSNLIS GFDVPEGSDK VAEDEFDPIP VLITKNPQG- ---------- ENSBTAP00000012302/1-902 KAAEDSNLIS GFDVPEGSDK VAEDEFDPIP VLITKNPQG- ---------- BACU013742/1-1123 -AAEDSNLIS GFDVPEGSDK VAEDEFDPIP VLITKNPQGI QREPNPYPVI bmy_20850T0/1-783 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000014531/1-867 ---------- ---------- ---------- ---------- ---------- ENSP00000386456/1-961 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012302/1-902 ---------- ---------- ---------- ---------- ---------- BACU013742/1-1123 TVEHFKESTG FKGLPLYPDP SRVPGMKTQN SLDYDYLARD GPSSNSSFHS bmy_20850T0/1-783 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSTTRP00000014531/1-867 ---------- ---------- ---------- ---------- ---------- ENSP00000386456/1-961 ---------G HSRNSSGS-- ---------- ---------- ---------- ENSBTAP00000012302/1-902 ---------G HSRNSSGS-- ---------- ---------- ---------- BACU013742/1-1123 SEEEGTDLEG DMLDCSGSRP LLLESSEEDE SCKPPQGKLG GATPFTQPEV bmy_20850T0/1-783 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000014531/1-867 ---------- ---------- ---------- ---------- ---------- ENSP00000386456/1-961 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012302/1-902 ---------- ---------- ---------- ---------- ---------- BACU013742/1-1123 SPEQAKAAQG GRKNQFGALT QPTADGLGEP DVFATAPFRS SRVPADDVDI bmy_20850T0/1-783 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000014531/1-867 ---------- ---------- ---------- ---------S LEYSPANPEA ENSP00000386456/1-961 ---------- ---------- ---------- ---------S ESSLPNLARS ENSBTAP00000012302/1-902 ---------- ---------- ---------- ---------S ESSLPNLARS BACU013742/1-1123 FTKAPFVCKG SVAPSQPEEA DVFLRAPFTK KKSMEELTVA QSASPESPAQ bmy_20850T0/1-783 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSTTRP00000014531/1-867 RAV------- ---------- ---------- ---------- ---------- ENSP00000386456/1-961 LLLVDQLIDL ---------- ---------- ---------- ---------- ENSBTAP00000012302/1-902 LLLVDQLIDL ---------- ---------- ---------- ---------- BACU013742/1-1123 PGLLRQTNDI PLPPGLDRAV HPSVRAQYSM AGFAQPSNHP SHSVQAADHL bmy_20850T0/1-783 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSTTRP00000014531/1-867 ---------- ---------- ---------- ---------- ---------- ENSP00000386456/1-961 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012302/1-902 ---------- ---------- ---------- ---------- ---------- BACU013742/1-1123 DSVSPRGTSL ESGAHPNDRN KGPQPQKESV SGPVAGKPFR PQSLSKYSRH bmy_20850T0/1-783 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSTTRP00000014531/1-867 ---------- ---------- ---------- ---------- ---------- ENSP00000386456/1-961 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012302/1-902 ---------- ---------- ---------- ---------- ---------- BACU013742/1-1123 YSPEDEPSPE AQPIAAYKIV SQTNKQSIAG SVSITSLSSR TTELPAADPF bmy_20850T0/1-783 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSTTRP00000014531/1-867 ---------- ---- ENSP00000386456/1-961 ---------- ---- ENSBTAP00000012302/1-902 ---------- ---- BACU013742/1-1123 ALAPFPSKSG KQKP bmy_20850T0/1-783 ---------- ----