KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:16 2014 Check: 00 .. Name: bmy_05731T0/1-242 Len: 475 Check: 492 Weight: 1.00 Name: BACU003455/1-466 Len: 475 Check: 9386 Weight: 1.00 Name: ENSP00000449381/1-473 Len: 475 Check: 6382 Weight: 1.00 Name: ENSTTRP00000010202/1-467 Len: 475 Check: 561 Weight: 1.00 Name: ENSBTAP00000012303/1-461 Len: 475 Check: 5126 Weight: 1.00 // 1 50 bmy_05731T0/1-242 ---------- ---------- ---------- ---------- ---------- BACU003455/1-466 MWEESDMEKA IKETSILEEY NINWTQKLGA GISGPV--RV CVKKSTQERF ENSP00000449381/1-473 MSEESDMDKA IKETSILEEY SINWTQKLGA GISGPV--RV CVKKSTQERF ENSTTRP00000010202/1-467 ------MEKA IKETSILEEY NINWTQKLGA GISGPV--RV CVKKSTQERF ENSBTAP00000012303/1-461 ---------- --ESSILEEY NINWTQKLGA GISGPVRSRV CVKKSTQERF 51 100 bmy_05731T0/1-242 ---------- -----MLFPC C-----ILSY LTKISNLKLF VHNDPEGYR- BACU003455/1-466 ALKILFDRPK ARNEVRLHMM CATHPNIVQI IEVFANSVQF PHESSPRARL ENSP00000449381/1-473 ALKILLDRPK ARNEVRLHMM CATHPNIVQI IEVFANSVQF PHESSPRARL ENSTTRP00000010202/1-467 ALKILFDRPK ARNEVHLHMM CATHPNIFQI IEVFANSVQF PHESSPTARL ENSBTAP00000012303/1-461 ALKILFDRPK ARNEVRLHMM CATHPNIVQI IEVFANSVQF PHESSPRARL 101 150 bmy_05731T0/1-242 ---------- ---------- -----EHERA SRHVVLTLM- ---------- BACU003455/1-466 LIVMEMMEGG ELFHRISQHR HFTEKQASQV TKQIALALQH CHLLNIAHRD ENSP00000449381/1-473 LIVMEMMEGG ELFHRISQHR HFTEKQASQV TKQIALALRH CHLLNIAHRD ENSTTRP00000010202/1-467 LIVMEMMEGG ELFHRISQHR HFTEKQASQV TKQATLALQH CHLLNIAHRD ENSBTAP00000012303/1-461 LIVMEMMEGG ELFHRISQHR HFTEKQASQV TKQIALALQH CHLLNIAHRD 151 200 bmy_05731T0/1-242 ---------- ---------- -FGM------ ---------- ---------- BACU003455/1-466 LKPENLLFKD NSLDAPVKLC DFGFAKIDQG DLMTPQFTPY YVAPQVLEAQ ENSP00000449381/1-473 LKPENLLFKD NSLDAPVKLC DFGFAKIDQG DLMTPQFTPY YVAPQVLEAQ ENSTTRP00000010202/1-467 LKPENLLFKD NSLDAPVKLC DFGFAKIDQG DLMTPQFTPY YVAPQVLEAQ ENSBTAP00000012303/1-461 LKPENLLFKD NSLDAPVKLC DFGFAKIDQG DLMTPQFTPY YVAPQVLEAQ 201 250 bmy_05731T0/1-242 ---------- ---------- ---------- ---------- ---------- BACU003455/1-466 RRHQKEKSGI IPTSPTPYTY NKSCDLWSLG VIIYVMLCGY PPFYSRHHSR ENSP00000449381/1-473 RRHQKEKSGI IPTSPTPYTY NKSCDLWSLG VIIYVMLCGY PPFYSKHHSR ENSTTRP00000010202/1-467 RRHQKEKSGI IPTSPTPYTY NKSCDLWSLG VIIYVMLCGY PPFYSRHHSR ENSBTAP00000012303/1-461 RRHQKEKSGI IPTSPTPYTY NKSCDLWSLG VIIYVMLCGY PPFYSKHHSR 251 300 bmy_05731T0/1-242 ---------- --GGYVFG-- ---------- ---RRLLKVK PEERLTIEGV BACU003455/1-466 TIPKDMRRKI MTGSFEFPEE EWSQISEMAK DVVRKLLKVK PEERLTIEGV ENSP00000449381/1-473 TIPKDMRRKI MTGSFEFPEE EWSQISEMAK DVVRKLLKVK PEERLTIEGV ENSTTRP00000010202/1-467 TIPKDMRRKI MTGSFEFPEE EWSQISEMAK DVVRKLLKVK PEERLTIEGV ENSBTAP00000012303/1-461 TIPKDMRRKI MTGSFEFPEE EWSQISEMAK DVVRKLLKVK PEERLTIEGV 301 350 bmy_05731T0/1-242 LDHPWLNSTE ALDNVLPSAQ LMMDKAVVAG IQQAHAEQLA NMRIQDLKVS BACU003455/1-466 LDHPWLNSTE ALDNVLPSAQ LMMDKAVVAG IQQAHAEQLA NMRIQDLKVS ENSP00000449381/1-473 LDHPWLNSTE ALDNVLPSAQ LMMDKAVVAG IQQAHAEQLA NMRIQDLKVS ENSTTRP00000010202/1-467 LDHPWLNSTE ALDNVLPSAQ LMMDKAVVAG IQQAHAEQLA NMRIQDLKVS ENSBTAP00000012303/1-461 LDHPWLNSTE ALDNVLPSAQ LMMDKAVVAG IQQAHAEQLA NMRIQELKVS 351 400 bmy_05731T0/1-242 LKPLHSVNNP ILRKRKLLGT KPKDGVYIHD RENGAEDSNV ALEKLRDVIA BACU003455/1-466 LKPLHSVNNP ILRKRKLLGT KPKDGVYIHD RENGAEDSNV ALEKLRDVIA ENSP00000449381/1-473 LKPLHSVNNP ILRKRKLLGT KPKDSVYIHD HENGAEDSNV ALEKLRDVIA ENSTTRP00000010202/1-467 LKPLHSVNNP ILRKRKLLGT KPKDGVYIHD RENGAEDSNV ALEKLRDVIA ENSBTAP00000012303/1-461 LKPLHSVNNP ILRKRKLLGT KAKDGVYIHD RENGAEDSNV ALEKLRDVIA 401 450 bmy_05731T0/1-242 QCILPQA--G ENEDEKLNEV VQEAWKYNRE CKLLRDTLQS FSWNGRGFTD BACU003455/1-466 QCILPQA--G ENEDEKLNEV VQEAWKYNRE CKLLRDTLQS FSWNGRSLN- ENSP00000449381/1-473 QCILPQAGKG ENEDEKLNEV MQEAWKYNRE CKLLRDTLQS FSWNGRGFTD ENSTTRP00000010202/1-467 QCILPQAGKG ENEDEKLNEV VQEAWKYNRE CKLLRDTLQS FSWNGRGFTD ENSBTAP00000012303/1-461 QCILPQA--G ENEDEKLNEV VQEAWKYNRE CKLLRDTLQS FSWNGRGFTD 451 500 bmy_05731T0/1-242 KVDRLKLAEI VKQVIEEQTT SHEFQ BACU003455/1-466 ----YAFPQE CREVIVFRIC RISGG ENSP00000449381/1-473 KVDRLKLAEI VKQVIEEQTT SHESQ ENSTTRP00000010202/1-467 KVDRLKLAEI VKQVIEEQTT SHESQ ENSBTAP00000012303/1-461 KVDRLKLAEI VKQVIEEQTT SHESQ