KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:17 2014 Check: 00 .. Name: ENSTTRP00000008260/1-778 Len: 852 Check: 449 Weight: 1.00 Name: ENSP00000367668/1-779 Len: 852 Check: 7686 Weight: 1.00 Name: bmy_21561T0/1-746 Len: 852 Check: 9463 Weight: 1.00 Name: ENSBTAP00000012307/1-779 Len: 852 Check: 1665 Weight: 1.00 Name: BACU001148/1-738 Len: 852 Check: 6108 Weight: 1.00 // 1 50 ENSTTRP00000008260/1-778 RRKPESPVGM VEIAGCAGQK RRGFLEGG-L LLLLLVTGAL AALGLLYADR ENSP00000367668/1-779 MGKSEGPVGM VESAGRAGQK RPGFLEGGLL LLLLLVTAAL VALGVLYADR bmy_21561T0/1-746 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012307/1-779 MGKPESPVGM VEIAGRSGQK HRGFLEAGLL LLLLLVTGAL VTLGLLYADS BACU001148/1-738 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000008260/1-778 REKQLPLFTS RLCFSKEEKT IVKRTPRDVQ KPRDASETCT TPGCVMAAAR ENSP00000367668/1-779 RGKQLPRLAS RLCFLQEERT FVKRKPRGIP EAQEVSEVCT TPGCVIAAAR bmy_21561T0/1-746 --KQLPLFTS RLCFSKEEKT TVKRTPRDIQ KPKDTGETCT TPGCVMAAAR ENSBTAP00000012307/1-779 RGKRLPLFSS RLCFSKEEKN TVKRAPREIK PSKDNVETCT TPGCVMAAAR BACU001148/1-738 ---------- ---------- --------IQ KPKDTGETCT TPGCVMAAAR 101 150 ENSTTRP00000008260/1-778 ILQNMDPSKK PCDDFYQYAC GGWLQRHVIP ETSSRYSVFD ILQDELEIIL ENSP00000367668/1-779 ILQNMDPTTE PCDDFYQFAC GGWLRRHVIP ETNSRYSIFD VLRDELEVIL bmy_21561T0/1-746 ILQNMDPSKE PCDDFYQYAC GGWLRRHVVP ETNSRYSVFD ILRDELEIIL ENSBTAP00000012307/1-779 ILQNMDPSME PCNDFYQYAC GGWLRRHVIP ETNSRYSVFD ILRDELEIIL BACU001148/1-738 ILQNMDPSKE PCVDFYQYAC GGWLQRHVVP ETNSRYSVFD ILRDELEIIL 151 200 ENSTTRP00000008260/1-778 KGVLE-NSTT KDRPAVQKAK MLYRSCMNEX XXXXXXXXXX XXXXXXXXXX ENSP00000367668/1-779 KAVLE-NSTA KDRPAVEKAR TLYRSCMNQS VIEKRGSQPL LDILEVVGGW bmy_21561T0/1-746 KGERGLHRRS GDSPSSQASG ERPLPPLS-G EIEKRDSKPL LDILEVVGGW ENSBTAP00000012307/1-779 KAVLE-NSTT KDRPAVQKAK MLYRSCMNES EIEKRDSQPL LNILEVVGGW BACU001148/1-738 KGLLE-NSTT KDRPAVQKAK MLYRSCMNES EIEKRDSQPL LDILEVVGGW 201 250 ENSTTRP00000008260/1-778 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000367668/1-779 PVAMDRWNET VGLEWELERQ LALMNSQFNR RVLIDLFIWN DDQNSSRHII bmy_21561T0/1-746 PVAMDKWSES IGPQWELEQQ LAVMNTRFNR RVLIDLFIWN DDQDSSQHII ENSBTAP00000012307/1-779 PVAMDKWNKS VGPQWELEQQ LAVMNAQFNR RVLIDLFIWN DDQNSSRHII BACU001148/1-738 PVAMDKWTES IGPRWELEQQ LAVMNARFNR RVLIDLFIWN DDQDSSQHII 251 300 ENSTTRP00000008260/1-778 X--------I DQPTLGMPSR EHYFNEGSDQ KXXXXXXXXX XXXXXXXXXX ENSP00000367668/1-779 Y--------I DQPTLGMPSR EYYFNGGSNR KVREAYLQFM VSVATLLRED bmy_21561T0/1-746 Y--------I DQPTLGMPSR EHYFSAGSDQ KVREAYLQLM VSVATMLRAD ENSBTAP00000012307/1-779 Y--------I DQPTLGMPSR EYYFKEGNNQ KVREAYLQFM VSVAMMLRAD BACU001148/1-738 YVRDALGGRI DQPTLGMPSR EHYFSAGSDQ KVREAYLQLM VSVATMLRAD 301 350 ENSTTRP00000008260/1-778 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000367668/1-779 ANLPRDSCLV QEDMVQVLEL ETQLAKATVP QEERHDVIAL YHRMGLEELQ bmy_21561T0/1-746 MNLPKNSDLV REDMARVLEL ETQLANATAP PEERHDVTAL YHRMDLEQLQ ENSBTAP00000012307/1-779 LNLPENSGLV QEDMAQVLEL ETQLANATVP QEERHDVTAL YHRMDLEQLQ BACU001148/1-738 MNLPKNSDLV REDMAQVLEL ETQLANATAP PEERHDVTAL YHRMDLEQLQ 351 400 ENSTTRP00000008260/1-778 XXXXXXGFNW TLFIQSVLSS VKIELLPDEE VVVYGIPYLQ NLEDIIDVYS ENSP00000367668/1-779 SQFGLKGFNW TLFIQTVLSS VKIKLLPDEE VVVYGIPYLQ NLENIIDTYS bmy_21561T0/1-746 SKFGLKGFNW TLFIQSVLSS VKIELLPDEE VVVYGIPYLQ NLEDIIDVYS ENSBTAP00000012307/1-779 NSFGLKGFNW TLFIQSVLSS VKIDLLPNEE VVVYGIPYLQ NLEGIIDVYS BACU001148/1-738 SKFGLKGFNW TLFIQSVLSS VKIKLLPDEE VVVYGIPYLQ NLEDIINVYS 401 450 ENSTTRP00000008260/1-778 SRTMQNYLVW RLVLDRISSL SQRFKDARAN YRKALYGTSA QEVRWRECVS ENSP00000367668/1-779 ARTIQNYLVW RLVLDRIGSL SQRFKDTRVN YRKALFGTMV EEVRWRECVG bmy_21561T0/1-746 SRTMQNYLVW RLVLDRISSL SQRFTDARAN YRKALYGTTV EEVRWRECVS ENSBTAP00000012307/1-779 PRTMQNYLIW RLVLDRISSL SQRFKEARAS YRKALYGTTV EEVRWRECVS BACU001148/1-738 SRTMQNYLVW RLVLDRISSL SQRFKDARAN YRKALYGTTV -EVRWRECVS 451 500 ENSTTRP00000008260/1-778 YVNSNMESAV GSLYVKEAFP RDSKNMVREL IDQLRAVFME TLDELSWMDK ENSP00000367668/1-779 YVNSNMENAV GSLYVREAFP GDSKSMVREL IDKVRTVFVE TLDELGWMDE bmy_21561T0/1-746 YVNSNMESAV GSLYVKEAFP GDSKKVVGEL IDKLRAVFVE TLDELSWMDE ENSBTAP00000012307/1-779 YVNSNMESAV GSLYVKEAFS GDSKDVVKEL IDKVRAVFVD TLDELSWMDE BACU001148/1-738 YVNSNMESAV GSLYVKEAFP GDSKNMVGEL IDKLRAVFVE TLDELSWMDE 501 550 ENSTTRP00000008260/1-778 SSKKAAQEKA VSIQEQVGYP DYILEEGNKH LDEEYSNLNF SEHLYFENGL ENSP00000367668/1-779 ESKKKAQEKA MSIREQIGHP DYILEEMNRR LDEEYSNLNF SEDLYFENSL bmy_21561T0/1-746 SSKKKAQEKA MSIREQIGYP DYILEEGNKH LDEEYSNLNF SEHLYFENGL ENSBTAP00000012307/1-779 SSKKKAQEKA MNIREQIGYP DYILEEGNKH LDEEYSNLNF SEHLYFENGL BACU001148/1-738 SSKKKAQEKA MSIREQIGYP DYILEEGNKH LDEEYSDLNF SEHLYFENGL 551 600 ENSTTRP00000008260/1-778 QNLKAGAQRS LRKLREKVDR NLXXXXXXXX XXXXXXXXXX XXFPAGILQP ENSP00000367668/1-779 QNLKVGAQRS LRKLREKVDP NLWIIGAAVV NAFYSPNRNQ IVFPAGILQP bmy_21561T0/1-746 QNLKAGAQRS LKKLREKVDQ NL-------- ---------- ---------- ENSBTAP00000012307/1-779 QNLKAGAQRS LKKLREKVDQ NLWIIGAAVV NAFYSPNRNQ IVFPAGILQP BACU001148/1-738 QNLKAGAQRS LKKLREKVDQ DLWIIGPAVV NAFYSPNRNQ IVFPAGILQP 601 650 ENSTTRP00000008260/1-778 PFFSKEQPQA LNFGGIGMVI GHEITHGFDD NGRNFDKNGN MMDWWSNFSA ENSP00000367668/1-779 PFFSKEQPQA LNFGGIGMVI GHEITHGFDD NGRNFDKNGN MMDWWSNFST bmy_21561T0/1-746 ----KEQPQA LNFGGIGMVI GHEITHGFDD NGRNFDKNGN MMDWWSNFSA ENSBTAP00000012307/1-779 PFFSKEQPQA LNFGGIGMVI GHEITHGFDD NGRNFDKNGN MLDWWSNFSA BACU001148/1-738 PFFSKEQPQA LNFGGIGMVI GHEITHGFDD NGRNFDKNGN MMDWWSNFSA 651 700 ENSTTRP00000008260/1-778 QHFRKQSECM VYQYGNYSWD LADDQNVNGF STLGENIADN GGVRQAYKAY ENSP00000367668/1-779 QHFREQSECM IYQYGNYSWD LADEQNVNGF NTLGENIADN GGVRQAYKAY bmy_21561T0/1-746 QHFRKRSECM VYQYGNYSWD LADDQNVNGF STLGENIADN GGVRQAYKAY ENSBTAP00000012307/1-779 QHFREQSECM VYQYGNYSWD LADDQNVNGF STLGENIADN GGVRQAYKAY BACU001148/1-738 QHFRKRSECM VYQYGNYSWD LADDQNVNGF STLGENIADN GGVRQAYKAY 701 750 ENSTTRP00000008260/1-778 LKWVAEGGKD QPLPGLQLTD KQLFFISYAQ VW-------- ---------C ENSP00000367668/1-779 LKWMAEGGKD QQLPGLDLTH EQLFFINYAQ VW-------- ---------C bmy_21561T0/1-746 LKWVAEGGKD QQLPGLELTY EQLFFISYAQ VRGAGLAAEP GRLRGRVPLC ENSBTAP00000012307/1-779 LKWVAEGGKD QQLPGLELTY QQLFFINYAQ VW-------- ---------C BACU001148/1-738 LKWVAEGGKD QQLPGLELTY EQLFFISYAQ GSVAHVEEKE ---------C 751 800 ENSTTRP00000008260/1-778 GSYR--PEFA IQSI------ --KTDVHSPL K--------- ------YRVL ENSP00000367668/1-779 GSYR--PEFA IQSI------ --KTDVHSPL K--------- ------YRVL bmy_21561T0/1-746 AGLPHAPEGA MPRLVAKAEP RCAAHAHSPT RGVPSARRRC CQRGPACAPL ENSBTAP00000012307/1-779 GSYR--PEFA IQSI------ --KTDVHSPL K--------- ------YRVL BACU001148/1-738 AGQS--PPFG AQEG------ --GHQHHAKL T--------- ------WAMV 801 850 ENSTTRP00000008260/1-778 ---------- ---GSLQNLA AFADAFHCAR GS--PMH--- -PKVRCHV-- ENSP00000367668/1-779 ---------- ---GSLQNLA AFADTFHCAR GT--PMH--- -PKERCRV-- bmy_21561T0/1-746 PAADPPAPRP ASVPGLERDP ALSPLRACPR GSTPPTA--- -AL------- ENSBTAP00000012307/1-779 ---------- ---GSLQNLG AFADAFHCAN GS--PMH--- -PTVRCRV-- BACU001148/1-738 TWDKPQPSQA ERTGPSSALQ PLTSPLSPGE GPAVPAHLAT LPLARHRKVG 851 900 ENSTTRP00000008260/1-778 W- ENSP00000367668/1-779 W- bmy_21561T0/1-746 -- ENSBTAP00000012307/1-779 W- BACU001148/1-738 WQ