KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:18 2014 Check: 00 .. Name: ENSBTAP00000012316/1-709 Len: 1013 Check: 6706 Weight: 1.00 Name: ENSP00000341171/1-747 Len: 1013 Check: 8706 Weight: 1.00 Name: BACU018177/1-858 Len: 1013 Check: 6559 Weight: 1.00 Name: ENSTTRP00000005542/1-724 Len: 1013 Check: 8509 Weight: 1.00 Name: bmy_14566T0/1-833 Len: 1013 Check: 8216 Weight: 1.00 // 1 50 ENSBTAP00000012316/1-709 ---------- ---------- ---------- ---------- ---------- ENSP00000341171/1-747 ---------- ---------- ---------- ---------- ---------- BACU018177/1-858 MADILLREED LKFASTMVHT LNTILLTSTE LFQLRNQLKD LKTPESQNLF ENSTTRP00000005542/1-724 ---------- ---------- ---------- ---------- ---------- bmy_14566T0/1-833 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000012316/1-709 ---------- ---------- ---------- ---------- ---------- ENSP00000341171/1-747 ---------- ---------- ---------- ---------- ---------- BACU018177/1-858 CCLYRSWCHN PVTTVSLCFL TQNYRHAYDL IQKFGDLEVT VDFLTEVDKL ENSTTRP00000005542/1-724 ---------- ---------- ---------- ---------- ---------- bmy_14566T0/1-833 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000012316/1-709 ---------- ---------- ---------- ---------- ---------- ENSP00000341171/1-747 ---------- ---------- ---------- ---------- ---------- BACU018177/1-858 VQLIECPIFT YLRLQLLDVK NNPYLIKALY GLLMLLPQSS AFQLLSHRLQ ENSTTRP00000005542/1-724 ---------- ---------- ---------- ---------- ---------- bmy_14566T0/1-833 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000012316/1-709 ---------- ---------- ---------- ---------- -SP-PQSSYP ENSP00000341171/1-747 ---------- ---------- --METAEKEC GALGGLFQAI VND-MKSSYP BACU018177/1-858 CVPNPELLQT GDGLKAAPKS QKADSPSIDY AELLQHFERV QKKHLESSYP ENSTTRP00000005542/1-724 ---------- ---------- ---------- ---------- ------SSYP bmy_14566T0/1-833 ---------- ---------- --METAEKEC GALGGLFQAI VND-MKSSYP 201 250 ENSBTAP00000012316/1-709 IWEDFNSKAT KLHSQLRTTV LAAVAFLDAF QKVADMATNT RGATRDIGSA ENSP00000341171/1-747 IWEDFNSKAT KLHSQLRTTV LAAVAFLDAF QKVADMATNT RGATRDIGSA BACU018177/1-858 IWEDFNSKAT KLHSQLRTTV LAAVAFLDAF QKVADMATNT RGATRDIGSA ENSTTRP00000005542/1-724 IWEDFNSKAT KLHSQLRTTV LAAVAFLDAF QKVADMATNT RGATRDIGSA bmy_14566T0/1-833 IWEDFNSKAT KLHSQLRTTV LAAVAFLDAF QKVADMATNT RGATRDIGSA 251 300 ENSBTAP00000012316/1-709 LTRMCMRHRS IETKLRQFTN ALLESLINPL QERIEDWKKS ANQLDKDHAK ENSP00000341171/1-747 LTRMCMRHRS IETKLRQFTN ALLESLINPL QERIEDWKKA ANQLDKDHAK BACU018177/1-858 LTRMCMRHRS IETKLRQFTN ALLESLINPL QERIEDWKKS ANQLDKDHAK ENSTTRP00000005542/1-724 LTRMCMRHRS IETKLRQFTN ALLESLINPL QERIEDWKKS ANQLDKDHAK bmy_14566T0/1-833 LTRMCMRHRS IETKLRQFTN ALLESLINPL QERIEDWKKS ANQLDKDHAK 301 350 ENSBTAP00000012316/1-709 ---------- ---------- --------EY KRARHEIKKK SSDTLKLQKK ENSP00000341171/1-747 ---------- ---------- --------EY KRARHEIKKK SSDTLKLQKK BACU018177/1-858 ---------- ---------- --------EY KRARHEIKKK SSDTLKLQKK ENSTTRP00000005542/1-724 ---------- ---------- --------EY KRARHEIKKK SSDTLKLQKK bmy_14566T0/1-833 GGSGAGPCFP PPTGRKPASQ GSFLIPCTEY KRARHEIKKK SSDTLKLQKK 351 400 ENSBTAP00000012316/1-709 ARK---GKGD LQPQLDSALQ DVNDMYLLLE ETEKQAVRRA LIEERGRFCT ENSP00000341171/1-747 ARKELLGKGD LQPQLDSALQ DVNDMYLLLE ETEKQAVRRA LIEERGRFCT BACU018177/1-858 ARK---GKGD LQPQLDSALQ DVNDMYLLLE ETEKQAVRRA LIEERGRFCT ENSTTRP00000005542/1-724 ARKELLGKGD LQPQLDSALQ DVNDMYLLLE ETEKQAV-RV LIDE-CRFCT bmy_14566T0/1-833 ARK---GKGD LQPQLDSALQ DVNDMYLLLE ETEKQAVRRA LIEERGRFCT 401 450 ENSBTAP00000012316/1-709 FITFLQPVVN GELTMLGEIT HLQGIIDDLV VLTAEPHKLP PASEQVITDL ENSP00000341171/1-747 FITFLQPVVN GELTMLGEIT HLQGIIDDLV VLTAEPHKLP PASEQVIKDL BACU018177/1-858 FITFLQPVVN GELTMLGEIT HLQGIIDDLV VLTAEPHKLP PASEQVIKDL ENSTTRP00000005542/1-724 FITFLQ-VVN GELTMLGEIT HLQGIIDDLV VLTAEPHKLP PASEQVIKDL bmy_14566T0/1-833 FITFLQPVVN GELTMLGEIT HLQGIIDDLV VLTAEPHKLP PASEQVIKDL 451 500 ENSBTAP00000012316/1-709 KGSDYSWSYQ TPPSSPSSSS SRKSSMCSG- ---SSAKGGG GPWPGGAQTC ENSP00000341171/1-747 KGSDYSWSYQ TPPSSPSSSS SRKSSMCSAP SSSSSAKGGG APWPGGAQTY BACU018177/1-858 KGSDYSWSYQ TPPSSPSSSS SRKSSMCSAP SSSSSAKGGG APWPGGAQTY ENSTTRP00000005542/1-724 KGSDYSWSYQ TPPSSPSSSS SRKSSMCSAP SSSSSAKGGG APWPGGAQTY bmy_14566T0/1-833 KGSDYSWSYQ TPPSSPSSSS SRKSSMCSAP SSSSSAKGGG APWPGGAQTY 501 550 ENSBTAP00000012316/1-709 SPGPACRYRS LAQPAPA-AR LSSVSSHDSG FVSQEATYSK PPSPMPSDIT ENSP00000341171/1-747 SPSSTCRYRS LAQPATTTAR LSSVSSHDSG FVSQDATYSK PPSPMPSDIT BACU018177/1-858 SPGSTCRYRS LAQPATASAR LSSVSSHDSG FISQDATYSK PPSPMPSDIT ENSTTRP00000005542/1-724 SPGSTCRYRS LAQPATASAR LSSVSSHDSG FISQDATYSK PPSPMPSDVT bmy_14566T0/1-833 SPGSTCRYRS LAQPATASAR LSSVSSHDSG FISQDATYSK PPSPMPSDIT 551 600 ENSBTAP00000012316/1-709 SQKSSSSASS EASETCQSVS ECSSPTSVSA PHLPRHSGRV Q--------- ENSP00000341171/1-747 SQKSSSSASS EASETCQSVS ECSSPTS--- ---------- ---------- BACU018177/1-858 SQKSSSSASS EASETCQSVS ECSSPTT--- ---------- ---------- ENSTTRP00000005542/1-724 SQKSSSSASS EASETCQSVS ECSSPTT--- ---------- ---------- bmy_14566T0/1-833 SQKSSSSASS EASETCQSVS ECSSPTTVSA SHPQRDTGRA QVQPEGRARS 601 650 ENSBTAP00000012316/1-709 ---------- ---------- ---------- -----DWAKA GPHEQPAGTA ENSP00000341171/1-747 ---------- ---------- ---------- -----DWSKV GSHEQPSGAT BACU018177/1-858 ---------- ---------- ---------- -----DWAKA GPHEQPSGTT ENSTTRP00000005542/1-724 ---------- ---------- ---------- -----DWAKA GPHEQPSGST bmy_14566T0/1-833 TCSPRDRPPG HHLQPLPTRS HLSLLGPAPG PGRTGDWAKA GPHEQPSGTT 651 700 ENSBTAP00000012316/1-709 LQRRKDRVEL LRDPELGPAG GGAPGPSGEE APRPRMSPAT IAAKHGEEVS ENSP00000341171/1-747 LQRRKDRVEL LRDTEPGPAS GGTLGPSGEE APRPRMSPAT IAAKHGEEVS BACU018177/1-858 LQRRKDRVEL LRDTEPGPAS GGTLGPSGEE APPPRMSPAT IAAKHGEEVS ENSTTRP00000005542/1-724 LQRRKDRVEL LRDTEPGPAV GGTLGPSGEE APRPRMSPAT IAAKHGEEVS bmy_14566T0/1-833 LQRRKDRVEL LRDTEPGPAS GGTLGPSGEE APRPRMSPAT IAAKHGEEVS 701 750 ENSBTAP00000012316/1-709 PAASDLAMVL TRGLSLEHQK SSRDSLQYSS GYSTQTTTPS CSEDTIPSQG ENSP00000341171/1-747 PAASDLAMVL TRGLSLEHQK SSRDSLQYSS GYSTQTTTPS CSEDTIPSQG BACU018177/1-858 PAASDLAMVL TRGLSLEHQK SSRDSLQYSS GYSTQTTTPS CSEDTIPSQG ENSTTRP00000005542/1-724 PAASDLAMVL TRGLSLEHQK SSRDSLQYSS GYSTQTTTPS CSEDTIPSQG bmy_14566T0/1-833 PAASDLAMVL TRGLSLEHQK SSRDSLQYSS GYSTQTTTPS CSEDTIPSQG 751 800 ENSBTAP00000012316/1-709 SDYDCYSVNG DADGEGPPEF DKSSTIPRNS NIAQNYRRLI QTKRPASTAG ENSP00000341171/1-747 SDYDCYSVNG DADSEGPPEF DKSSTIPRNS NIAQNYRRLI QTKRPASTAG BACU018177/1-858 SDYDCYSVNG DADGEGPPEF DK-------- ---------- ---------- ENSTTRP00000005542/1-724 SDYDCYSVNG DADGEGPPEF DKSSTIPRNS NIAQNYRRLI QTKRPASTAG bmy_14566T0/1-833 SDYDCYSVNG DADGEGPPEF DKSSTIPRNS NIAQNYRRLI QTKRPASTAG 801 850 ENSBTAP00000012316/1-709 LPTA------ ---SGAPPGV ATIRRTPSTK PTVRRALSSA GPIPIRPPIV ENSP00000341171/1-747 LPTAGLPTAT GLPSGAPPGV ATIRRTPSTK PTVRRALSSA GPIPIRPPIV BACU018177/1-858 ---------- ---------- ---------- --------SA GPIPIRPPIV ENSTTRP00000005542/1-724 LPTAGLPTT- ---SGAPPGV ATIRRTPSTK PAVRRTLSSA GPIPIRPPIV bmy_14566T0/1-833 LPTAGLPTT- ---SGAPPGV ATIRRTPSTK PAVRRTLSSA GPIPIRPPIV 851 900 ENSBTAP00000012316/1-709 PVKTPTVPDS PGYVGPTRAG SEECVFYTDE AAAALAPDLA KASPKRLSLP ENSP00000341171/1-747 PVKTPTVPDS PGYMGPTRAG SEECVFYTDE TASPLAPDLA KASPKRLSLP BACU018177/1-858 PVKTPTVPDS PGYVGPTRAG SEECVFYTDE AASPLAPDLA RASPKRLSLP ENSTTRP00000005542/1-724 PVKTPTVPDS PGYVGPTRAG SEECVFYTDE AASPLAPDLA RASPKRLSLP bmy_14566T0/1-833 PVKTPTVPDS PGYVGPTRAG SEECVFYTDE AASPLAPDLA RASPKRLSLP 901 950 ENSBTAP00000012316/1-709 NTAWGSPSPE AAGYAGLAA- ---QDDEEQQ QQLAANRHSL VEKL------ ENSP00000341171/1-747 NTAWGSPSPE AAGYPGAGA- ------EDEQ QQLAANRHSL VEKLGELVAG BACU018177/1-858 NTAWGSPSPE AASYPGPGAG LAAEDDEAQQ QQLAANRHSL VEKLGELVAG ENSTTRP00000005542/1-724 NTAWGSPSPE AASYPGPGAG LAAEGDEQQQ QQLAANRHSL VEKLGELVAG bmy_14566T0/1-833 NTAWGSPSPE AASYPGPGAG LAAEDDEAQQ QQLAANRHSL VEKLGELVAG 951 1000 ENSBTAP00000012316/1-709 ---------- ---ALSAAPA EGTPAPPPAA PGEPPAEDML VAIRRGVRLR ENSP00000341171/1-747 AHALGEGQFP FPTALSATPT EETPTPPPAA TSDPPAEDML VAIRRGVRLR BACU018177/1-858 AHALGEGQFP FPTALSATPV EETPTPPPAA TSDPPAEDML VAIRRGVRLR ENSTTRP00000005542/1-724 AHALGEGQFP FPTALSATPV EETPTPPPAA TSDPPAEDML VAIRRGVRLR bmy_14566T0/1-833 AHALGEGQFP FPTALSATPV EETPTPPPAA TSDPPAEDML VAIRRGVRLR 1001 1050 ENSBTAP00000012316/1-709 RTVTNDRSAP RIL ENSP00000341171/1-747 RTVTNDRSAP RIL BACU018177/1-858 RTVTNDRSAP RIL ENSTTRP00000005542/1-724 RTVTNDRSAP RIL bmy_14566T0/1-833 RTITNDRSAP RIL