KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:41 2014 Check: 00 .. Name: ENSP00000391788/1-594 Len: 606 Check: 6630 Weight: 1.00 Name: ENSBTAP00000012334/1-597 Len: 606 Check: 6720 Weight: 1.00 Name: ENSTTRP00000016453/1-582 Len: 606 Check: 1145 Weight: 1.00 Name: bmy_06002T0/1-526 Len: 606 Check: 7354 Weight: 1.00 Name: BACU002402/1-423 Len: 606 Check: 8748 Weight: 1.00 // 1 50 ENSP00000391788/1-594 MNFNVWNIKE MLSIPSGSGN KKSSNWNNNQ NDYSSLSDSQ FLFGSQFCPE ENSBTAP00000012334/1-597 MNFNVWNIKD MFSIPSGSGA TKSSNWNNNQ TDYSSLSDSQ FLFGSQFCPE ENSTTRP00000016453/1-582 ---------- MLSIPSGSGA TKSSNWNNNQ TDYSGLSDSQ FLFGSQFCPE bmy_06002T0/1-526 LQTSVEKSEE HLS------S RSQSIWDSLE TV-------- ----AKTC-E BACU002402/1-423 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000391788/1-594 NSETLSAPLD FGAHLRHSKQ SQQNYLEGEP SIFTKYQTKP QLFGGDIKDG ENSBTAP00000012334/1-597 GSQTLSTPVD SEVHLRHPKQ SQQNSLDSEP SIFTKYQTKP QLLGGDPKDG ENSTTRP00000016453/1-582 SSETPSTPLD FGVHLRHPKQ SQQNSLDSEP SIFIKYQTKP QLFGRDTKDG bmy_06002T0/1-526 CLEFESQPSQ SATQLSSATG TSQHHF---- ---------- ---------- BACU002402/1-423 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000391788/1-594 GLFPPPLSVG KSKGLLEQFE EKKKRAKDKC DSETLYNFVS NVRESILRLQ ENSBTAP00000012334/1-597 GLFPLPLSLG KPKGLLEQFE EKKKSAKDKC DSETLYNFIS HIKESIHKLQ ENSTTRP00000016453/1-582 GLFPLPLSVG KSKGLLEQFE EKKKTAKDKC DSETLYNFIS HIKESINRLQ bmy_06002T0/1-526 -LSLTPYYRS TVSSRIRQNY STKVEATVNC -LVNMHLQAS YTYLSLDAME BACU002402/1-423 ---------- ---------- ---------- ---------- --------ME 151 200 ENSP00000391788/1-594 TSVEKSEDHL SSRSQSILDS LETVAKTLQE TIQAQNDLVF EAVQDKGNME ENSBTAP00000012334/1-597 TSVEESEEHL SSRSQSILDS LETVAKTWQE TAKAQSGLML EIVQDKGNVD ENSTTRP00000016453/1-582 TSVEKFEEHL -NRSQXXXXX XXXXXXXXQE TMKAQSDLVL ETVRDKCNME bmy_06002T0/1-526 AAVLR-EKNL -NQVLVDLYA LGS------- ---ARTDPHL WDFRESCFLE BACU002402/1-423 AAVLR-EKNL -NQVLVDLHA LGS------- ---ARTDPHL CDFRESCFLE 201 250 ENSP00000391788/1-594 QAILEMKKRF EARQGEFIEM KSNLKHLEVL VAQQSQEFQQ LCEQLGQLNV ENSBTAP00000012334/1-597 QAILELQKRL EARQAEFTEM KSDLKHLEVL VIQQSKDFQQ LCEHLGQLNM ENSTTRP00000016453/1-582 QAILELQKRF EGRQAEFIEM KSNLKHFEVL VAQQSKDFQQ LYEQLGQLNM bmy_06002T0/1-526 ---------- EQRQAELIEM KSNLKHLEVL VAQQSKDFQQ LCEQLGQLNM BACU002402/1-423 ---------- EQRQAEFIEM KSNLKHLEVL VAQQSKDLQQ LCEQLGQLNM 251 300 ENSP00000391788/1-594 PSVLAELKRL ISVP----PV KDSASQTSPP LAQSLNLTRQ EKYTSEKPVL ENSBTAP00000012334/1-597 PSVLAELKRL TSIALTPKHV KDSASQTSPP LAQSLSFPRQ DKYTSEKPVT ENSTTRP00000016453/1-582 PSVLAELNQL ISVSRIPRHV KDSASQTSPP LAQSLSFTRQ EKYASEEPVM bmy_06002T0/1-526 PSVLAELNQL ISVPRIPRHV KDSASQTSPP LAQSLSFTMQ EKYASEEPVM BACU002402/1-423 PSVLAELNQL ISVPRIPRHV KDSASQTSPP LAQSLSFTMQ EKYASEEPVM 301 350 ENSP00000391788/1-594 WQAQALPAAW NPGMGSLQPG EFDVWGEGAK NDDLQEEAAL PAFGSHERNR ENSBTAP00000012334/1-597 WQAQALPAAC SLSVGSPRPR EFAVWGEGSK RDALQEEAVQ PAVGTGKRNR ENSTTRP00000016453/1-582 WQAQALPAAC NLSVGSLRPG ESGVWGEGAK SSALQEEAVP LAVGTGKRNR bmy_06002T0/1-526 WQAQALPAAC NLSVGSLRPG ESGVWGEGAK SSALQEEAVP LAVGTGKRNR BACU002402/1-423 WQAQALPTAC NLSVGSLRPG ESGVWGEGAK SSALQEEAVP LAVGTGKRNR 351 400 ENSP00000391788/1-594 HVKDKVVQTN CKNWAVTKTG AKNHGSSVPG HKIPSDRDLV SQGASQLTSL ENSBTAP00000012334/1-597 QIKGRAVKTN CQN-SVTKTG SENCGSAILG HKVPKDRDPV FQGDSQLISR ENSTTRP00000016453/1-582 QIKDKAVQTN CQNCAITKTG SENDGSGILG HKMPEDRDLV SQGASRLISL bmy_06002T0/1-526 QIKDKAVQTN CQNCAITKTG SENHGSGVLG HKIPEDRDLV SQGASRLISL BACU002402/1-423 QIKDKAVQTN CQNCAITKTG SENHGSGVLG HKIPEDRDLV SQGASRLISL 401 450 ENSP00000391788/1-594 ---EI-NFST SIKNACQKYQ AQSMFLCDPR EH-LVIKQKD GTVEMRGKDK ENSBTAP00000012334/1-597 GYKDLNNSAT SIKNTSQKWQ AKGAFSCHPC EQRLVTEQKG VTVERGKKD- ENSTTRP00000016453/1-582 ---DLNNFAT SIKNTCQKCQ AKGMFSCNPC EQRLVTEQKG RTVERGGKGK bmy_06002T0/1-526 ---DLNNFAN SIKNNCQKCQ AKGMFSCNPC EQRLVTEQKG RTVERGGKGK BACU002402/1-423 ---DLNNFAT SIKNNCQKCQ AKGMFSCNPC EQRLVTKQKG RTVERGGKDK 451 500 ENSP00000391788/1-594 KQQPRKAHRA HRGRLIASKQ KQIPIQTCKF NSKYQSPQPA ISVPQSPFLG ENSBTAP00000012334/1-597 KQQPRKAPRR ---RSLRRKQ EQMPSKTCVS NSKY--PRPP VSSPQSSPWG ENSTTRP00000016453/1-582 KQPPRKAPRS ---RLLARKQ EQTPSKTCAS NSKY--PHPP VSIPQRPPQG bmy_06002T0/1-526 KQHPRKAPRS ---RLLARKQ EQTPSKTCAS NSKY--PHPS VSIPQRPPLG BACU002402/1-423 KQHPRKAPRR ---RLLARKQ EQTPSKTCAS NSKY--PHPP VSIPQRPPLG 501 550 ENSP00000391788/1-594 QQEPRAQPLH LQCPRSPRKP VCPILGGTVM PNKTVRAVQG RLLQLSRCSS ENSBTAP00000012334/1-597 QQETLAQPLQ LWGPRSPTNL VCSAQGGTVM PSKTTRAEQG NLVQCSGHSS ENSTTRP00000016453/1-582 WQEPVAQPLH LQGPRSPTNP VCSALRGTVM PSKTARAVQG NLLQYRGHAS bmy_06002T0/1-526 RQEPLAQPLH FQGPRSPTKP VCSALRGTVM PSKTARAVQG NLLQYSGHAS BACU002402/1-423 RQEPLAQPLH LQGPRSPTKP VCSALRGTVM PSKTARAVQG NLLQYSGHAS 551 600 ENSP00000391788/1-594 QDNWLLSSSS QGDHQMSWFS ---DLNLGCS ETPLCKEAGK NLLYDLGFDS ENSBTAP00000012334/1-597 QDNSLLFPSF QGDHKMSWFS DLNDLNPR-A ESLQSQESGK NILYDLGFDS ENSTTRP00000016453/1-582 QDNSMLSHSS QGDQQMSWFS ---DLSIR-K EPPQCKEPRK NMLYDLGFDS bmy_06002T0/1-526 QDNSLLSHSS QGDQQMSWFS ---DLNVG-K EPPQCKEPGK NMLYDLGFDS BACU002402/1-423 QDNSLLSHSS QADQQMSWFS ---DLNVG-K EPPQCKEPGK NMLYDLGFDS 601 650 ENSP00000391788/1-594 SDDDGF ENSBTAP00000012334/1-597 S-DDGF ENSTTRP00000016453/1-582 S-DDGF bmy_06002T0/1-526 S-DDGF BACU002402/1-423 S-DDGF