KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:46:41 2014 Check: 00 .. Name: ENSTTRP00000011503/1-340 Len: 347 Check: 7893 Weight: 1.00 Name: bmy_21910T0/1-269 Len: 347 Check: 4324 Weight: 1.00 Name: ENSP00000398124/1-346 Len: 347 Check: 116 Weight: 1.00 Name: ENSBTAP00000012342/1-271 Len: 347 Check: 4064 Weight: 1.00 // 1 50 ENSTTRP00000011503/1-340 ------AGSG QPAP-GRGQC QRPQPQQSHV QTPPPPPPTP IWGGGGGSSR bmy_21910T0/1-269 ------MTAL QKDS------ ---------- ---------- ---------- ENSP00000398124/1-346 MAAAEPASSG QQAPAGQGQG QRPPPQPPQA QAPQPPPPPQ LGGAGGGSSR ENSBTAP00000012342/1-271 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000011503/1-340 HEKSLGLLTT KFVSLLQEAK DGVLDLKAAA DTLAVRQKRR IYDITNVLEG bmy_21910T0/1-269 ---------- ----LTLKDK NSTM----AA DTLAVRQKRR IYDITNVLEG ENSP00000398124/1-346 HEKSLGLLTT KFVSLLQEAK DGVLDLKAAA DTLAVRQKRR IYDITNVLEG ENSBTAP00000012342/1-271 ---------- ---------- ------KQAA DTLAVRQKRR IYDITNVLEG 101 150 ENSTTRP00000011503/1-340 IDLIEKKSKN SIQWXXXXXX XXXXXXXXXX XXXXXXXXXX XXKERELDQQ bmy_21910T0/1-269 IDLIEKKSKN SIQWKGVGAG CNTKEVIDRL RYLKAEIEDL ELKERELDQQ ENSP00000398124/1-346 IDLIEKKSKN SIQWKGVGAG CNTKEVIDRL RYLKAEIEDL ELKERELDQQ ENSBTAP00000012342/1-271 IDLIEKKSKN SIQWKGVGAG CNTKEVIDRL KYLKAEIEDL ELKERELDQQ 151 200 ENSTTRP00000011503/1-340 KLWLQQSIKN VMDDSINNST FSYVTHEDIC NCFNGDTLLA IQAPSGTQLE bmy_21910T0/1-269 ---------- --------NT FSYVTHEDIC NCFNGDTLLA IQAPSGTQLE ENSP00000398124/1-346 KLWLQQSIKN VMDDSIN-NR FSYVTHEDIC NCFNGDTLLA IQAPSGTQLE ENSBTAP00000012342/1-271 KLWLQQSIKN VMDDSINNST FSYVTHEDIC NCFNGDTLLA IQAPSGTQLE 201 250 ENSTTRP00000011503/1-340 VPIPEMGQNG QKKYQINLKS HSGPIHVLLI NKESSSSKPV VFPVPPPDDL bmy_21910T0/1-269 VPIPEMGQNG QKKYQINLKS HSGPIHVLLI NKESSSSKPV VFPVPPPDDL ENSP00000398124/1-346 VPIPEMGQNG QKKYQINLKS HSGPIHVLLI NKESSSSKPV VFPVPPPDDL ENSBTAP00000012342/1-271 VPIPEMGQNG QKKYQINLKS HSGPIHVLLI NKESSSSKPV VFPVPPPDDL 251 300 ENSTTRP00000011503/1-340 TQPSSQPSTP VPPQKSNMAT QNLPEQHVSE RSQNLQQTPA TDLSSAGSIS bmy_21910T0/1-269 TQPSSQPSTP VPPQKSNMAT QNLPEQHVSE RSQNLQQTPA TELSSAGSIS ENSP00000398124/1-346 TQPSSQSLTP VTPQKSSMAT QNLPEQHVSE RSQALQQTSA TDISSAGSIS ENSBTAP00000012342/1-271 AQPPSQPPTP VPPHKPSSAV QSLPEPPVSE RSQPLQHTPA TDLSSAGSIS 301 350 ENSTTRP00000011503/1-340 GDIIDELMSS DVFPLLRLSP TPADDYNFNL DDNEGVCDLF DVQILNY bmy_21910T0/1-269 GDIIDELMSS DVFPLLRLSP TPADDYNFNL DDNEGVCDLF DVQILNY ENSP00000398124/1-346 GDIIDELMSS DVFPLLRLSP TPADDYNFNL DDNEGVCDLF DVQILNY ENSBTAP00000012342/1-271 GDIIDELMSS DVFPLLRLSP TPADDYNFNL DDNEGVCDLF DVQILNY