KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:42 2014 Check: 00 .. Name: ENSBTAP00000012345/1-532 Len: 552 Check: 5440 Weight: 1.00 Name: ENSP00000046794/1-533 Len: 552 Check: 3136 Weight: 1.00 Name: BACU003686/1-441 Len: 552 Check: 8742 Weight: 1.00 Name: bmy_06219T0/1-516 Len: 552 Check: 3416 Weight: 1.00 Name: ENSTTRP00000002044/1-525 Len: 552 Check: 5690 Weight: 1.00 // 1 50 ENSBTAP00000012345/1-532 MAFKNVPFRS EVLSWDPNTL ADYFKKLNYK DCEKVVRKYD IDGPRFLNLA ENSP00000046794/1-533 MALRNVPFRS EVLGWDPDSL ADYFKKLNYK DCEKAVKKYH IDGARFLNLT BACU003686/1-441 MAFRNVPFRS EVLAWDPDTL ADYFKKLNYK DCEKAVKKYH IDGPRFLNLA bmy_06219T0/1-516 MAFRNVPFRS EVLAWDPDTL ADYFKKLNYK DCEKAVKKYH IDGPRFLNLA ENSTTRP00000002044/1-525 MALRNVPFRS EVLAWDPDTL ADYFKKLNYR DCEKAVKKYH IDGLRFLNLA 51 100 ENSBTAP00000012345/1-532 ENDIQKFPKL RVPILSKLSQ EINKNEERRS IFTRKPQVQR FPEETESHEE ENSP00000046794/1-533 ENDIQKFPKL RVPILSKLSQ EINKNEERRS IFTRKPQVPR FPEETESHEE BACU003686/1-441 ENDIQKFPKL RVPILSKLSQ EINRNEERRS IFTRKPQVQR FPEETESHEE bmy_06219T0/1-516 ENDIQKFPKL RVPILSKLSQ EINKNEERRS IFTRKPQVQR FPEET----- ENSTTRP00000002044/1-525 ENDIQKFPKL RVPILSKLSQ EINKNEERRS IFTRKPQVQR FPEETXXXEE 101 150 ENSBTAP00000012345/1-532 DNGGWSSFEE DDYESPNDDA DAEDDGDYES PNEEEEAPLE DDADYEPPPS ENSP00000046794/1-533 DNGGWSSFEE DDYESPNDDQ DGEDDGDYES PNEEEEAPVE DDADYEPPPS BACU003686/1-441 DNGGWSSFE- DDYESPDDDQ DGEDDGDYES PNEEEEAPVE DDADYEPPPS bmy_06219T0/1-516 ---------- DDYESPDDDQ DGEDDGDYES PNEEEEAPME DDADYEPPPS ENSTTRP00000002044/1-525 DNGGWSSFDE DDYESPDDDQ YGEDDGDYES PNEEEEALVE DDADYEPPPS 151 200 ENSBTAP00000012345/1-532 NDEEALQNSI LPAKPLSNPN SMYIDRPATG KV-QQPPVPP QRPMPSLPPL ENSP00000046794/1-533 NDEEALQNSI LPAKPFPNSN SMYIDRPPSG KTPQQPPVPP QRPMAALPPP BACU003686/1-441 NDEEALQNSI LPAKPFSNPS STYIDRPHSG KV-QQPPVPP QRPMAAILPL bmy_06219T0/1-516 NDEEALQNSI LPAKPFSNPS STYIDRPHSG KV-QQPPVPP QRPMAAILPL ENSTTRP00000002044/1-525 NNEEALQNSI LPAKPFSNPG SIYIDRPHSG KV-QQPPVPP QRPMAAICPL 201 250 ENSBTAP00000012345/1-532 PTAGRIHQPL PPPQPNHEEP SRSRNHKTAK LPAPSIDRST KPALDRSLVP ENSP00000046794/1-533 PAG-RNHSPL PPPQTNHEEP SRSRNHKTAK LPAPSIDRST KPPLDRSLAP BACU003686/1-441 PAGGRAHSPL PPPQPNHEEP NRSRNQKTAK LPAPSIDRST KPPLDRSLAP bmy_06219T0/1-516 PAGGRAHSV- ---------- --GSILSVMP LCVHSMISSA ERKNYRHL-- ENSTTRP00000002044/1-525 PSGSRAHSPP PPPQPNHEEP SRSRNHKTAK LPAPSIDRST KPPLDRSLAP 251 300 ENSBTAP00000012345/1-532 FDREPFTL-- GWKPMISDKS SVLGGRPPGE HLPKIQKPPL PPATERHDRG ENSP00000046794/1-533 FDREPFTL-- GKKPPFSDKP SIPAGRSLGE HLPKIQKPPL PPTTERHERS BACU003686/1-441 FDREPFAL-- ---------- ---------- ---------- ---------- bmy_06219T0/1-516 -----YAILA RKKPAISDKL SAPAGRPLGE HLPKIQKPPL PPAMERHDRS ENSTTRP00000002044/1-525 FDREPFAI-- GKKPAISDKL SAPAGRPLGE HLPKIQKPPL PPAMERHDRS 301 350 ENSBTAP00000012345/1-532 SPLPGKKPPV PRHMRGPERR EN-------- --------DE DDVHQRLPPQ ENSP00000046794/1-533 SPLPGKKPPV PKHGWGPDRR EN-------- --------DE DDVHQRPLPQ BACU003686/1-441 ---------- ---------- ---------- ---------- --VHQRSLPQ bmy_06219T0/1-516 SPLPGKKPPV PKHAWGSDRR ENVSTKCHVV NAWHRETGDE DDVHQRSLPQ ENSTTRP00000002044/1-525 SPLPGKKPPV PKHGWGSDRR EN-------- --------VS TQLHQRSLPQ 351 400 ENSBTAP00000012345/1-532 PSPLPMTSNT FPSRSTKPSP KNSLPLTHSS GAFSESNSNF SQSASLPPYF ENSP00000046794/1-533 PALLPMSSNT FPSRSTKPSP MNPLPSSHMP GAFSESNSSF PQSASLPPYF BACU003686/1-441 PALLPMSSNT FPSRSTKPLP KHSLPSAHLP GAFSER---F VLTS-----F bmy_06219T0/1-516 PALFPMSSNT FPSRSTKPSP KHSLPSAHLP GAFSESNSSF SQSASLPPYF ENSTTRP00000002044/1-525 PALLPMSSNT FPSRSTKPSP KHSVPSAHLP GAFSESNSGF SQSASLPPYF 401 450 ENSBTAP00000012345/1-532 SQGPGNRPLP RMEGRNF-SP VPSKPRSQSP GEEENSLNED WYVSYVTRTE ENSP00000046794/1-533 SQGPSNRPPI RAEGRNFPLP LPNKPRPPSP AEEENSLNEE WYVSYITRPE BACU003686/1-441 SSNPALRLGP LI-----LSA CP-------- ----NSLNED WYVSYVTRTE bmy_06219T0/1-516 SQGPSNRPPP RVEGRSFPSP APNKPQLPSP SEEENSLNED WYVSYITRIE ENSTTRP00000002044/1-525 SQGPSNRPPP RGEGRSFPSP APTKPQ---- ----NSLNED WYVSYITRIE 451 500 ENSBTAP00000012345/1-532 AEAALRKINQ DGTFLVRDSS KKTISNPYVL MVLYKDKVYN IQIRYQEESQ ENSP00000046794/1-533 AEAALRKINQ DGTFLVRDSS KKTTTNPYVL MVLYKDKVYN IQIRYQKESQ BACU003686/1-441 AEAALRKINQ DGTFLVRDSS RKTITNPYVL MVLYKDKVYN IQIRYQEESQ bmy_06219T0/1-516 AEAALRKINQ DGTFLVRDSS RKTITNPYVL MVLYKDKVYN IQIRYQEESQ ENSTTRP00000002044/1-525 AEAALRKINQ DGTFLVRDSS RKTITNPYVL MVLYKEKVYN IQIRYQEESQ 501 550 ENSBTAP00000012345/1-532 VYLLGTGLRG KEDFLSVSDI IDYFRKMPLL LIDGKNRGSR YQCTLTYSAG ENSP00000046794/1-533 VYLLGTGLRG KEDFLSVSDI IDYFRKMPLL LIDGKNRGSR YQCTLTHAAG BACU003686/1-441 VYLLGTGLRG KEDFLSVSDI IDYFRKMPLL LIDGKNRGSR YQCTLTYSAG bmy_06219T0/1-516 VYLLGTGLRG KEDFLSVSDI IDYFRKMPLL LIDGKNRGSR YQCTLTYSAG ENSTTRP00000002044/1-525 VYLLGTGLRG KEDFLSVSDI IDYFRKMPLL LIDGKNRGSR YQCTLTYSAG 551 600 ENSBTAP00000012345/1-532 YP ENSP00000046794/1-533 YP BACU003686/1-441 YP bmy_06219T0/1-516 YP ENSTTRP00000002044/1-525 YP