KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:43 2014 Check: 00 .. Name: ENSP00000260731/1-1056 Len: 1091 Check: 5519 Weight: 1.00 Name: ENSBTAP00000012347/1-1055 Len: 1091 Check: 8483 Weight: 1.00 Name: ENSTTRP00000011721/1-1056 Len: 1091 Check: 4369 Weight: 1.00 Name: bmy_11525T0/1-998 Len: 1091 Check: 1222 Weight: 1.00 Name: BACU012470/1-1014 Len: 1091 Check: 8605 Weight: 1.00 // 1 50 ENSP00000260731/1-1056 MASQPNSSAK KKEEKGKNIQ VVVRCRPFNL AERKASAHSI VECDPVRKEV ENSBTAP00000012347/1-1055 MASQPNSSAK KKDEKGKNIQ VVVRCRPFNL AERKANAHSV VECDHVRKEV ENSTTRP00000011721/1-1056 MASQPNSSAK KKDEKGKNIQ VVVRCRPFNL AERKVNAHSV VECDHIRKEV bmy_11525T0/1-998 MASQPNSSAK KKDEKGKNIQ VVVRCRPFNL AERKANAHSV VECDHIRKEV BACU012470/1-1014 MASQPNSSAK KKDEKGKNIQ VVVRCRPFNL AERKANAHSV VECDHIRKEV 51 100 ENSP00000260731/1-1056 SVRTGGLADK SSRKTYTFDM VFGASTKQID VYRSVVCPIL DEVIMGYNCT ENSBTAP00000012347/1-1055 SVRTGGLADK SSRKTYTFDM VFGANTKQID VYRSVVCPIL DEVIMGYNCT ENSTTRP00000011721/1-1056 SVRTGGLADK SSRKTYTFDM VFGASTKQID VYRSVVCPIL DEVIMGYNCT bmy_11525T0/1-998 SVRTGGLADK SSRKTYTFDM VFGASTKQID VYRSVVCPIL DEVIMGYNCT BACU012470/1-1014 SVRTGGLADK SSRKTYTFDM VFGASTKQID VYRSVVCPIL DEVIMGYNCT 101 150 ENSP00000260731/1-1056 IFAYGQTGTG KTFTMEGERS PNEEYTWEED PLAGIIPRTL HQIFEKLTDN ENSBTAP00000012347/1-1055 IFAYGQTGTG KTFTMEGERS PNEEYTWEED PLAGIIPRTL HQIFEKLTDN ENSTTRP00000011721/1-1056 IFAYGQTGTG KTFTMEGERS PNEEYTWEED PLAGIIPRTL HQIFEKLTDN bmy_11525T0/1-998 IFAYGQTGTG KTFTMEGERS PNEEYTWEED PLAGIIPRTL HQIFEKLTDN BACU012470/1-1014 IFAYGQTGTG KTFTMEGERS PNEEYTWEED PLAGIIPRTL HQIFEKLTDN 151 200 ENSP00000260731/1-1056 GTEFSVKVSL LEIYNEELFD LLNPSSDVSE RLQMFDDPRN KRGVIIKGLE ENSBTAP00000012347/1-1055 GTEFSVKVSL LEIYNEELFD LLNPSSDVSE RLQMFDDPRN KRGVIIKGLE ENSTTRP00000011721/1-1056 GTEFSVKVSL LEIYNEELFD LLNPSSDVSE RLQMFDDPRN KRGVIIKGLE bmy_11525T0/1-998 GTEFSVKVSL LEIYNEELFD LLNPSSDVSE RLQMFDDPRN KRGVIIKGLE BACU012470/1-1014 GTEFSVKVSL LEIYNEELFD LLNPSSDVSE RLQMFDDPRN KRGVIIKGLE 201 250 ENSP00000260731/1-1056 EITVHNKDEV YQILEKGAAK RTTAATLMNA YSSRSHSVFS VTIHMKETTI ENSBTAP00000012347/1-1055 EITVHNKDEV YQILEKGAAK RTTAATLMNA YSSRSHSVFS VTIHMKETTV ENSTTRP00000011721/1-1056 EITVHNKDEV YQILEKGAAK RTTAATLMNA YSXXXXXXXX XXXXXXXXXX bmy_11525T0/1-998 EITVHNKDEV YQILEKGAAK RTTAATLMNA YSSRSHSVFS VTIHMKETTI BACU012470/1-1014 EITVHNKDEV YQILEKGAAK RTTAATLMNA YSSRSHSVFS VTIHMKETTI 251 300 ENSP00000260731/1-1056 DGEELVKIGK LNLVDLAGSE NIGRSGAVDK RAREAGNINQ SLLTLGRVIT ENSBTAP00000012347/1-1055 DGEELVKIGK LNLVDLAGSE NIGRSGAVDK RAREAGNINQ SLLTLGRVIT ENSTTRP00000011721/1-1056 XXXXXXXXXX XXXVDLAGSE NIGRSGAVDK RAREAGNINQ SLLTLGRVIT bmy_11525T0/1-998 DGEE------ --LVDLAGSE NIGRSGAVDK RAREAGNINQ SLLTLGRVIT BACU012470/1-1014 DGEELVKIGK LNLVDLAGSE NIGRSGAVDK RAREAGNINQ SLLTLGRVIT 301 350 ENSP00000260731/1-1056 ALVERTPHVP YRESKLTRIL QDSLGGRTRT SIIATISPAS LNLEETLSTL ENSBTAP00000012347/1-1055 ALVERTPHVP YRESKLTRIL QDSLGGRTRT SIIATVSPAS LNLEETLSTL ENSTTRP00000011721/1-1056 ALVERTPHVP YRESKLTRIL QDSLGGRTKT SIIATVSPAS LNLEETLSTL bmy_11525T0/1-998 ALVERTPHVP YRESKLTRIL QDSLGGRTRT SIIATISPAS LNLE------ BACU012470/1-1014 ALVERTPHVP YRESKLTRIL QDSLGGRTRT SIIATISPAS LNLEETLSTL 351 400 ENSP00000260731/1-1056 EYAHRAKNIL NKPEVNQKLT KKALIKEYTE EIERLKRDLA AAREKNGVYI ENSBTAP00000012347/1-1055 EYAHRAKNIL NKPEVNQKLT KKALIKEYTE EIERLKRDLA AAREKNGVYI ENSTTRP00000011721/1-1056 EYAHRAKNIL NKPEVNQKLT KKALIKEYTE EIERLKRDLA AAREKNGVYI bmy_11525T0/1-998 ---------- ---------- ------EYTE EIERLKRDLA AAREKNGVYI BACU012470/1-1014 EYAHRAKNIL NKPEVNQKLT KKALIKEYTE EIERLKRDLA AAREKNGVYI 401 450 ENSP00000260731/1-1056 SEENFRVMSG KLTVQEEQIV ELIEKIGAVE EELNRVTELF MDNKNELDQC ENSBTAP00000012347/1-1055 SEENFRAMSG KLTVQEEQIV ELVEKIAAVE EELNRVTELF MDSKNELNQC ENSTTRP00000011721/1-1056 SEENFRAMSG KLTVQEEQIV ELLEKIAAVE EELSRVTELF TDNKNELDQC bmy_11525T0/1-998 SEENFRAMSG KLTVQEEQIV ELLEKIAAVE EELSRVTELF MDNKNELDQC BACU012470/1-1014 SEENFRAMSG KLTVQEEQIV ELLEKIAAVE EELSRVTELF MDNKNELDQC 451 500 ENSP00000260731/1-1056 KSDLQNKTQE LETTQKHLQE TKLQLVKEEY ITSALESTEE KLHDAASKLL ENSBTAP00000012347/1-1055 KSDLQSKTQE LETTQRQLQE TKLQLVEEEY ITSALESTEE RLHNAANRLL ENSTTRP00000011721/1-1056 KSDLQNKTQE LETTQRHLQE TKLQLVEEEY FTSALESTEE KLHDTASRLL bmy_11525T0/1-998 KSDLQNKTQE LETTQRHLQE TKLQLVEEEY FTSALESTEE KLHDTASRLL BACU012470/1-1014 KSDLQNKTQE LETTQRHLQE TKLQLVEEEY FTSALESTEE KLHDTASRLL 501 550 ENSP00000260731/1-1056 NTVEETTKDV SGLHSKLDRK KAVDQHNAEA QDIFGKNLNS LFNNMEELIK ENSBTAP00000012347/1-1055 NTVEETTKDV FGLHSKLDRK KAVDQHNAEA QD-FGQNLNS LFNNMEELIK ENSTTRP00000011721/1-1056 NTVEETTKDV SGLHSKLDRK KAVDQHNAEA QDIFGKNLNS LFDSMEELIK bmy_11525T0/1-998 NTVEETTKDV SGLHSKLDRK KAVDQHNAEA QDIFGKNLNS LFNSMEELIK BACU012470/1-1014 NTVEETTKDV SGLHSKLDRK KAVDQHNAEA QDIFGKNLNS LFNSMEELIK 551 600 ENSP00000260731/1-1056 DGSSKQKAML EVHKTLFGNL LSSSVSALDT ITTVALGSLT SIPENVSTHV ENSBTAP00000012347/1-1055 DGSMKQKAML EVHKTLFGNL LTSSVSALDS ITTTALGSLS SIPENVSTLV ENSTTRP00000011721/1-1056 DGSTKQKAML EVHKTLFGNL LSSSVSALDT ITTTALGSLT SIPENVSTLV bmy_11525T0/1-998 DGSTKQKAML EVHKTLFGNL LSSSVSALDT ITTTALGSLT SIPENVSTLV BACU012470/1-1014 DGSTKQKAML EVHKTLFGNL LSSSVSALDT ITTTALGSLT SIPENVSTLV 601 650 ENSP00000260731/1-1056 SQIFNMILKE QSLAAESKTV LQELINVLKT DLLSSLEMIL SPTVVSILKI ENSBTAP00000012347/1-1055 SQISNMILKE QSLAAESKTV LQGLINVLKT ELLSSLGTVL SPTVASILEI ENSTTRP00000011721/1-1056 SQISIMILKE QSLAAESKTV LQKLINVLKS DLLSSLETVL SPTVISILEI bmy_11525T0/1-998 CQISNMILKE QSLAAESKTV LQKLI----- ---------- ---------- BACU012470/1-1014 SQISNMILKE QSLAAESKTV LQKLI----- ---------- ---------- 651 700 ENSP00000260731/1-1056 NSQLKHIFKT SLTVADKIED QKKELDGFLS ILCNNL---- ---HELQENT ENSBTAP00000012347/1-1055 NSQLENIFKT LSIVANKIED QKKEMDGFLS TLCNNL---- ---HELKENT ENSTTRP00000011721/1-1056 NSQLKHIFKT SLILANKIED QKKEMDGFLS TLCNNL---- ---HELKEDT bmy_11525T0/1-998 ------VSKS LIF------- -EGQIYGSEN ILFKELFVYF QNQNVLKSDL BACU012470/1-1014 ---------- -------IED QKKEMDGFLS TLCNNL---- ---HELKEDT 701 750 ENSP00000260731/1-1056 ICSL------ ---------- ---------- -VESQKQCGN LTEDLKTIKQ ENSBTAP00000012347/1-1055 VSSL------ ---------- ---------- -AESQKLCEN LTEDMKKTKK ENSTTRP00000011721/1-1056 ISSL------ ---------- ---------- -ADTQKLCEN LTDDLKTIKK bmy_11525T0/1-998 LSSLETVLSP TVVSILEINS QLKHIFKTSL ILANKKLCEN LTEDLKTIKK BACU012470/1-1014 ISSL------ ---------- ---------- -AETQKLCEN LTEDLKTIKK 751 800 ENSP00000260731/1-1056 THSQELCKLM NLWTERFCAL EEKCENIQKP LSSVQENIQQ KSKDIVNKMT ENSBTAP00000012347/1-1055 IQSQELYQLI NLWEERYCDL EEKCKNIQKP LSSVQENTEQ KSKDIISKTI ENSTTRP00000011721/1-1056 IHSQELCQLI NLWKERFCAL EEKCENMWKP LSSVQENTEQ KSKDIISKTT bmy_11525T0/1-998 IHSQELCQLI SLWKERFCAL EEKCENMWKP LSSVQENTEH ---------- BACU012470/1-1014 IHSQELCQLI NLWKERFCAL EEKCENMWKP LSSVQENTEQ KSKDIISKTT 801 850 ENSP00000260731/1-1056 FHSQKFCADS DGFSQELRNF NQEGTKLVEE SVKHSDKLNG NLEKISQETE ENSBTAP00000012347/1-1055 SHSEKFCADF DDLSEELRHF NQEGTKLVEE SKKHCDKLSS NLEIISKETE ENSTTRP00000011721/1-1056 SHSEKFGADF DDLSAELRHF NQEGTKLVEE SEKHCDKLSS NLEITSQETE bmy_11525T0/1-998 ---EKFGANF DDLSAELRHF NQEGTKLVEE SEKHCDKLSS NLEVIPQETE BACU012470/1-1014 SHNEKFGADF DDLSAELRHF NQEGTKLVEE SEKHCDKLSS NLEVISQGTE 851 900 ENSP00000260731/1-1056 QRCESLNTRT VYFSEQWVSS LNEREQELHN LLEVVSQCCE ASSSDITEKS ENSBTAP00000012347/1-1055 QRCEALNTST LCFSEQWASW LSKRQEELQN LLKVVNQGCE TSSLEITEQL ENSTTRP00000011721/1-1056 QRCEALNTST LYFSEQWVSC LNKREEELQN LLKVVQQGCE ASSSEITEKL bmy_11525T0/1-998 QRCEALNTST LCFSEQWVSC LNKREEELQN LLKVVQQGCE ASSSEITEKL BACU012470/1-1014 QRCEALNTST LCFSEQWVSC LNKREEELQN LLKVVQQGCE ASSSEITEKL 901 950 ENSP00000260731/1-1056 DGRKAAHEKQ HNIFLDQMTI DEDKLIAQNL ELNETIKIGL TKLNCFLEQD ENSBTAP00000012347/1-1055 SGHKAANENQ QNFFLSQITI DEEELMTRSQ ELNKTVKIGL NKLNCFLQQD ENSTTRP00000011721/1-1056 IGHKAANENQ HNILLGQITI DEEELMTQSQ ELNKTVKIGL TKLNCFLQQD bmy_11525T0/1-998 IGHKAANENQ HNILLGQITI DEEELMTQNQ ELNKTVKIGL TKLNCFLQQD BACU012470/1-1014 IGHKAANENQ HNILLGQITV DEEELMTQSQ ELNKTVKIGL TKLNCFLQQD 951 1000 ENSP00000260731/1-1056 LKLDIPTGTT PQRKSYLYPS TLVRTEPREH LLDQLKRKQP ELLMMLNCSE ENSBTAP00000012347/1-1055 LKLDIPTGTT PQRKNYVYPS TLVRTQPREQ LLDQLKMKQP ELLTMLNCSE ENSTTRP00000011721/1-1056 LKLDIPTGMT PQRKNYLYPS ALVRTQPREQ LLDQLKRKQP ELLMMLNCSE bmy_11525T0/1-998 LKLDIPTGTT PQRKNYLYPS TLVRTQPREQ LLDQLKRKQP ELLMTLNCSE BACU012470/1-1014 LKLDIPTGTT PQRKNYLYPS TLVRTQPREQ LLDQLKRKQP ELLMTLNCSE 1001 1050 ENSP00000260731/1-1056 NNKEETIPDV DVEEAVLGQY TEEPLSQEPS VDAGVDCSSI GGVPFFQHKK ENSBTAP00000012347/1-1055 NNK-ETSQDL DEENAVLVLT VEEPLTQEPS VDTSLDCSSS GGVPFFQHKK ENSTTRP00000011721/1-1056 NNKEETSQDL DEEKAVLVHT VEEPLSQEPS VDTSLDCSSS CGVPFFQHKK bmy_11525T0/1-998 NNKEETSQDL DEEKAVLVHT VEEPLSQEPS VDTSLDCSSS GGVPFFQHKK BACU012470/1-1014 NNKEETSQDL DEEKAVLVHT VEEPLSQEPS VDTSLDCSSS GGVPFFQHKK 1051 1100 ENSP00000260731/1-1056 SHGKDKENRG INTLERSKVE ETTEHLVTK- SRLPLRAQIN L ENSBTAP00000012347/1-1055 SHGKDKENRG TNPLEKSKVE EIIEQSVTKS SRLPLRAQNN F ENSTTRP00000011721/1-1056 SHGKDKENRG INPLERSKVE ETIEQSVTK- SRLPLRAQNN F bmy_11525T0/1-998 SHGKDKENRG INPLERSKVE ETTEQSVMK- SRLPLRAQNN F BACU012470/1-1014 SHGKDKENRG INPLERSKVE ETTEQSVMK- SRLPLRAQNN F