KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:44 2014 Check: 00 .. Name: ENSTTRP00000013515/1-1197 Len: 1314 Check: 1537 Weight: 1.00 Name: ENSBTAP00000012349/1-1225 Len: 1314 Check: 948 Weight: 1.00 Name: ENSP00000376410/1-1249 Len: 1314 Check: 5490 Weight: 1.00 Name: bmy_20783T0/1-887 Len: 1314 Check: 4049 Weight: 1.00 Name: BACU006322/1-1139 Len: 1314 Check: 1175 Weight: 1.00 // 1 50 ENSTTRP00000013515/1-1197 MSVKEGAQRK WAALKEKLGP QDSDPTEANL ESAEPELCIR LLQVPSVVNY ENSBTAP00000012349/1-1225 MSVKEGAQRK WAALKEKLGP QDSDPTEANL ESAEPELCIR LLQVPSVVNY ENSP00000376410/1-1249 MSVKEGAQRK WAALKEKLGP QDSDPTEANL ESADPELCIR LLQMPSVVNY bmy_20783T0/1-887 MSVKEGAQRK WAALKEKLGP QDSDPTEANL ESAEPELCIR LLQMPSVVNY BACU006322/1-1139 MSVKEGTQRK WAALKEKLGP QDSDPTEANL ESAEPELCIR LLQMPSVVNY 51 100 ENSTTRP00000013515/1-1197 SGLRKRLESS DGGWMVQFLE QSGLDLLLEA LARLSGRGVA RIADALLQLT ENSBTAP00000012349/1-1225 SGLRKRLEGS DGGWMVQFLE QSGLDLLLEA LARLSGRGVA RIADALLQLT ENSP00000376410/1-1249 SGLRKRLEGS DGGWMVQFLE QSGLDLLLEA LARLSGRGVA RISDALLQLT bmy_20783T0/1-887 SGLRKRLESS DGGWMVQFLE QSGLDLLLEA LARLSGRGVA RIADALLQLT BACU006322/1-1139 SGLRKRLESS DGGWMVQFLE LSGLDLLLEA LARLSGRGVA RIADALLQLT 101 150 ENSTTRP00000013515/1-1197 CISCVRAVMN SQEGIQYILS NQAYVRQL-- ---------- ---------- ENSBTAP00000012349/1-1225 CVSCVRAVMN SQEGIQYILS NQAYVRQLSL A--------- ---------- ENSP00000376410/1-1249 CVSCVRAVMN SRQGIEYILS NQGYVRQLSQ A--------- ---------- bmy_20783T0/1-887 CIT------- ---------- ---------- ---------- ---------- BACU006322/1-1139 CISCVRAVMN SQEGIQYILS NQAYVRQLSQ ALDTSNVMVK KQVLGGRLAH 151 200 ENSTTRP00000013515/1-1197 ---------- --SQVMVKKQ VLELLAALCV YSPEGHALTL DALDHYKTVC ENSBTAP00000012349/1-1225 ---------L DTSNMMVKKQ VFELLAALCI YSPEGHALTL DALDHYKTVC ENSP00000376410/1-1249 ---------L DTSNVMVKKQ VFELLAALCI YSPEGHVLTL DALDHYKTVC bmy_20783T0/1-887 ---------L DTSNVMVKKQ VLELLAALCV YSPEGHALTL DALDHYKTVC BACU006322/1-1139 LRGPLPLAAL DTSNVMVKKQ VLELLAALCV YSPEGHALTL DALDHYKTVC 201 250 ENSTTRP00000013515/1-1197 SQXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000012349/1-1225 GQQYRFSVIM SELSDSDNVP YVATLLSVVN AIILGPEDVR ARAQLRSEFI ENSP00000376410/1-1249 SQQYRFSIVM NELSGSDNVP YVVTLLSVIN AVILGPEDLR ARTQLRNEFI bmy_20783T0/1-887 SQQYRFSVIM NELSDSDNVP YVATLLSVVN AIILGPEDVR ARAQLRSEFI BACU006322/1-1139 SQQYRFSVIM NELSDSDNVP YVATLLSVVN AIILGPEDVR ARAQLRSEFI 251 300 ENSTTRP00000013515/1-1197 XLQLLDVLMR LRDLEDEDLL IQLEAFREAK AEDEEELLRV FGGVDVSSHQ ENSBTAP00000012349/1-1225 GLQLLDVLTR LRDLEDGDLL IQLEAFREAR AEDEEELLRA FGGIDINSHQ ENSP00000376410/1-1249 GLQLLDVLAR LRDLEDADLL IQLEAFEEAK AEDEEELLRV SGGVDMSSHQ bmy_20783T0/1-887 GLQLLDVLMR LRDLEDEDLL IQLEAFREAK AEDEEELLRV FGGIDINSHQ BACU006322/1-1139 GLQLLDALTR LRDLEDEDLL IQLEAFREAK AEDEEELLRV FGGIDINSHQ 301 350 ENSTTRP00000013515/1-1197 EVFASLFHKV SCSPVSAHLL SVLQGLLHLE PTLRSSQLLW EALESLVNRA ENSBTAP00000012349/1-1225 EVFSALFHKV SCSPASAHLL SVLQGLLHLE PSLRSSQLLW EALESLVNRA ENSP00000376410/1-1249 EVFASLFHKV SCSPVSAQLL SVLQGLLHLE PTLRSSQLLW EALESLVNRA bmy_20783T0/1-887 EVFASLFHKV GRG------- ---------- ---------- ---------- BACU006322/1-1139 EVFASLFHKV SCSPASAHLL SVLQGLLHLE PTVRSSQLLW EALESLVSWA 351 400 ENSTTRP00000013515/1-1197 VLLASDXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000012349/1-1225 VLLATDGQEC TLEEMVERLL SIKGRPHPRS LDKAHKSTQA DFGQSQRGSS ENSP00000376410/1-1249 VLLASDAQEC TLEEVVERLL SVKGRPRPSP LVKAHKSVQA NLDQSQRGSS bmy_20783T0/1-887 ---------- ---------- --RGSPSRDC LGGGAGGLRA RK-------- BACU006322/1-1139 VLLASDTQEC TLEEMVERLL SIKGWPRPRS LDKAHKGVQV NLGQSQRGSS 401 450 ENSTTRP00000013515/1-1197 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000012349/1-1225 PQNSGTPTAD LGGQQPAAAL GSPPVASVQG ER-GPAPQPT APEPLERPSC ENSP00000376410/1-1249 PQNTTTPKPS VEGQQPAAAA ACEPVDHAQS ESILKVSQPR ALEQQASTPP bmy_20783T0/1-887 ---------- ---------- ---------- ---------- ---------- BACU006322/1-1139 PQN------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000013515/1-1197 XXXXXPLPGT ATCPPPPPPP PPP------- -------PPP LPSLGAAFPS ENSBTAP00000012349/1-1225 PSAPCLLPGG CSGHRVKAQR YPVSSRAG-- -----HLPTA VPGMGARAPS ENSP00000376410/1-1249 PPPPPPLLPG SSAEPPPPPP PPPLPSVGAK ALPTAPPPPP LPGLGAMAPP bmy_20783T0/1-887 ---------- ---------- ---------- ---------- ---------- BACU006322/1-1139 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000013515/1-1197 PPP--PPLPG PSGTIPPPPP P-PGLGCPPP PPP------- ---------L ENSBTAP00000012349/1-1225 LPPWAPSWPG ------PRPA PWVWPWERRR AARCWRSRAP PPRCRGCSTL ENSP00000376410/1-1249 APPLPPPLPG SCEFLPPPPP PLPGLGCPPP PPPLLPGMGW GPPPPPPPLL bmy_20783T0/1-887 ---------- ---------- ---------- ---------- ---------- BACU006322/1-1139 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000013515/1-1197 PGTSGPPAAG GMEEITVAH- --SLGSAWVP SHRRVQPPTL --------RM ENSBTAP00000012349/1-1225 PTWSCPLWVR GLQS--GSHL TPKSRGSWCR PRGLAGVPCL GPGPGQAYSR ENSP00000376410/1-1249 PCTCSPPVAG GMEEVIVAQV DHGLGSAWVP SHRRVNPPTL --------RM bmy_20783T0/1-887 -----PPAAG GAEEIIVAHV GHSLGSAWVP SHRRVHPPTL --------RM BACU006322/1-1139 -------AAG GAEEIIVAHV GHSLGSAWVP SHRRVQPPTL --------RM 601 650 ENSTTRP00000013515/1-1197 KKLNWQKLPS SVARERSSMW A-SLSSPDTE MVEPDFSTI- -----ERLFS ENSBTAP00000012349/1-1225 HLINAQRSPP ADAMSTPSPW AHAVQGPSSR DLPPSRGRVG AQGPEGRPLT ENSP00000376410/1-1249 KKLNWQKLPS NVAREHNSMW A-SLSSPDAE AVEPDFSSI- -----ERLFS bmy_20783T0/1-887 KKLNWQKLPS TVARERSSMW A-SLSSPDAE VVEPDFSSI- -----ERLFS BACU006322/1-1139 KKLNWQKLPS TVVRERSSMW A-SLSSPDAE VVEPDFSSL- -----ERLFS 651 700 ENSTTRP00000013515/1-1197 FPVAKPKEQA -VAP-ARKEP KEITFLDSKK SLNLNIFLKQ FRCSNEEVTA ENSBTAP00000012349/1-1225 CPRPLLQEES ---RGGRASP RAT--LDGNF C-QFSFFMRR VGGFTRRWRG ENSP00000376410/1-1249 FPAAKPKEPT MVAPRARKEP KEITFLDAKK SLNLNIFLKQ FKCSNEEVAA bmy_20783T0/1-887 FPVAKPKEQA -VAP-ARKEP KEITFLDSKK SLNLNIFLKH ---SNEELTX BACU006322/1-1139 FPVAKPKEQA -VAP-ARKEP KEITFLDSKK SLSLNIFLKQ FKCSNEELTA 701 750 ENSTTRP00000013515/1-1197 MIRAGDTTKF DVEVLKQLRK LLPEKHEDEH LRSFTEDRAR LASADQLYLL ENSBTAP00000012349/1-1225 TQAEPRPPST WATMISSTLP AGPCGSQAGG WGPLEPE--- ---------L ENSP00000376410/1-1249 MIRAGDTTKF DVEVLKQLLK LLPEKHEIEN LRAFTEERAK LASADHFYLL bmy_20783T0/1-887 MIRAGDTSKF DVEVLKQLLK LLPEKHE--- ---------- ---------- BACU006322/1-1139 MIRAGDTSKF DVEVLRQLLK LLPEKHEIEN LRSFTEDRAR LASADQFYLL 751 800 ENSTTRP00000013515/1-1197 LLDIPCYQLR VECMLLCEGT AVVLDMVRPK AQLLLAACE- ---------- ENSBTAP00000012349/1-1225 LLCRPSYQLR IECMLLCEGT AVVLDMVRPK AQLLLAACE- ---------- ENSP00000376410/1-1249 LLAIPCYQLR IECMLLCEGA AAVLDMVRPK AQLVLAACE- ---------- bmy_20783T0/1-887 ---------- ---------- ---------- ---------- ---------- BACU006322/1-1139 LLGIPCYQLR VECMLLCEGT AVVLDMVRPK AQLLLAACET GRRGQAVKGR 801 850 ENSTTRP00000013515/1-1197 ---GLLASHR LPVFCLLILK IGNFLNYGSH TGDADGFKMS ALLKLTETKA ENSBTAP00000012349/1-1225 ---SLLTSHR LPVFCQLILK IGNFLNYGSH TGDADGFKIS TLLKLTETKS ENSP00000376410/1-1249 ---SLLTSRQ LPIFCQLILR IGNFLNYGSH TGDADGFKIS TLLKLTETKS bmy_20783T0/1-887 ---------- ---------- -------GSH TGDADGFKMS TLLKLTETKA BACU006322/1-1139 HPAGLLASHR LPVFCLLILK IGNFLNYGGH TGDADGFRMS TLPKLAETKA 851 900 ENSTTRP00000013515/1-1197 QQGRVTLLHH VLEEVEESHP DLLQLPQDLE PPSRAAGINL EIIQSECSSN ENSBTAP00000012349/1-1225 QQSRVTLLHH VLEEVEESHP DLLQLPQDLE LPARAAGINL DAIHSESSTN ENSP00000376410/1-1249 QQNRVTLLHH VLEEAEKSHP DLLQLPRDLE QPSQAAGINL EIIRSEASSN bmy_20783T0/1-887 QQSRVTLLHH VLEEVEESHP DLLQLPQDLE PPSRAAGINL EIIHSECSTN BACU006322/1-1139 QQSRVTLLHH VLQEVEESHP DLLQLPQDLE LPSRAAGINL EIIHSECSAN 901 950 ENSTTRP00000013515/1-1197 LKKLLEMERK VSSSIPEVQE QYSQRLQ--- --XXXXXXXX XXXXXXXXXX ENSBTAP00000012349/1-1225 LKKLLEMERK VSSSVPEVQE QYSHRLQ--- --ASITDSQA LEEVFQAFEQ ENSP00000376410/1-1249 LKKLLETERK VSASVAEVQE QYTERLQ--- --ASISAFRA LDELFEAIEQ bmy_20783T0/1-887 LKKLLEMERK VSSSIPE--- ---------- --ASITASQE VEEVFQAIKQ BACU006322/1-1139 LKKLLEMERK VSSSIPEVQE QYSQRLQASA GRASITASQE VEEVFQAIKQ 951 1000 ENSTTRP00000013515/1-1197 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000012349/1-1225 KQLELASYLC EDTQQLSLED TLSTMKTFRD LFLRALKENK DRKEQAAKAE ENSP00000376410/1-1249 KQRELADYLC EDAQQLSLED TFSTMKAFRD LFLRALKENK DRKEQAAKAE bmy_20783T0/1-887 KQLELAAYLC EDAQQLSLQD TLSTMKAFRD LFIRALQENK DRKEQAARAE BACU006322/1-1139 KQLELAAWLC EDAQQLSLED TLSTMKAFRD LFIRTLKENK DRKEQAARAE 1001 1050 ENSTTRP00000013515/1-1197 XXXXXXX-XX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000012349/1-1225 RRKQQLA-EE EARRPRGEGG KAARRGGGKQ EEVCVIDALL ADIRKGFQLR ENSP00000376410/1-1249 RRKQQLA-EE EARRPRGEDG KPVRKGPGKQ EEVCVIDALL ADIRKGFQLR bmy_20783T0/1-887 RRRQQLAQEE EARRLRGEAG KPVRKGGGKQ EEVCVIDALL ADIRKGFQLR BACU006322/1-1139 RRRQQLAQEE EARRLRGEDG KPVRQGGGKQ EEVCVIDALL ADIRKGFQLR 1051 1100 ENSTTRP00000013515/1-1197 XXXXXXXXXX XXXXXXXXXX XXXXXXXATR ----DPVGGT SLPTSEPGLD ENSBTAP00000012349/1-1225 KTARGRGDAE AASRAAATDP PRNKAPAATR ----DPVGGA SPPTSEPGLD ENSP00000376410/1-1249 KTARGRGDTD GGSKAASMDP PRATEPVATS NPAGDPVGST RCPASEPGLD bmy_20783T0/1-887 KTARGRGDTE AASRAAAADP PRSKAPAATR ----DAVGGT SLPTSEPGPD BACU006322/1-1139 KTARGRGDTE VASRAAAADP PRSKAPAATR ----DPVGGT SLPTSESGPD 1101 1150 ENSTTRP00000013515/1-1197 AAVAKEPRGW GLADAAPSSP QPTGDSSEKG GPGPLERRSS WYMDASDVLA ENSBTAP00000012349/1-1225 AAAAREPQGW DLADAVPTSR QPTGDSSETG GPGALERRSS WYTDASDFLP ENSP00000376410/1-1249 ATTASESRGW DLVDAVTPGP QPTLEQLEEG GPRPLERRSS WYVDASDVLT bmy_20783T0/1-887 AAAAKEPHGW ALADAAPSSA QPIGDSSEKG GPGSLERRSS WYMDASDFLA BACU006322/1-1139 AAAAKEPRGW ALVDAAPSSA QPTGDSSEKG GPGSLERRSS WYVDASDVLA 1151 1200 ENSTTRP00000013515/1-1197 TDDPLGPQPS -----LVLGG TQALKPLNFS SDKLSKATGL SQDTEEPTAP ENSBTAP00000012349/1-1225 TEDPQGPQPP AGAWPVVLGD AQALKPLDF- SDQPPKAMDL SPDAEEPPAT ENSP00000376410/1-1249 TEDPQCPQPL EGAWPVTLGD AQALKPLKFS SNQPPAAGSS RQDAKDPTSL bmy_20783T0/1-887 TEDPLGPQPS AGAWPLVLGD TQALKPLNFS SDKPSTAMGL SQDTEEPTAP BACU006322/1-1139 TEDPLGPQPS AGAWPLVPGD TQALKPLNFS SDKPSTAMGL SQDTEEPTAP 1201 1250 ENSTTRP00000013515/1-1197 PGARQAEADT TGEGAEDAAA HGRGAGLPAA GRGGDGDEDD EHTAPDSALD ENSBTAP00000012349/1-1225 LGARQAEASS ADEGLEDAAA HCHRAGLPAA GP--DEDGDG ELTAPDSALD ENSP00000376410/1-1249 LGVLQAEADS TSEGLEDA-V HSRGARPPAA GPGGDEDEDE EDTAPESALD bmy_20783T0/1-887 PGAHQAEADT TREGAEDAAA HGRGAGLPAA GRGGDGDEDE ERTAPDSALD BACU006322/1-1139 PGTRQAEADT TREGAEDAGA HGRGAGLPAA GRGGDGDEDE ERTAPDSTLD 1251 1300 ENSTTRP00000013515/1-1197 TSLDRSFSEE AVTDSSGSGA LPRAQGRTSK GTGKRRKKRP SRSQEE-VAL ENSBTAP00000012349/1-1225 TSLDRSFSED AVTDSSGSST LPRAQGRTSK GTGKRRKKRS SRNQEAEVAP ENSP00000376410/1-1249 TSLDKSFSED AVTDSSGSGT LPRARGRASK GTGKRRKKRP SRSQEE-VPP bmy_20783T0/1-887 TSLDRSFSED AVTDSSGSGT LPRAQGRTSK GTGKRRKKRP SRSQEG-LRP BACU006322/1-1139 TSLDRSFSED AVTDSSGSGT LPRAQGRTSK GTGKRRKKRP SRSQEAEVDL 1301 1350 ENSTTRP00000013515/1-1197 DPDDNKTKRL CVIQ ENSBTAP00000012349/1-1225 DPDDNKTKRL CVIQ ENSP00000376410/1-1249 DSDDNKTKKL CVIQ bmy_20783T0/1-887 RP---RTK-- ---- BACU006322/1-1139 DPDDNKTKRL CVIQ