KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:46 2014 Check: 00 .. Name: ENSTTRP00000002993/1-1463 Len: 1512 Check: 1839 Weight: 1.00 Name: bmy_05388T0/1-1008 Len: 1512 Check: 4499 Weight: 1.00 Name: BACU013293/1-1466 Len: 1512 Check: 2753 Weight: 1.00 Name: ENSP00000262113/1-1465 Len: 1512 Check: 918 Weight: 1.00 Name: ENSBTAP00000012351/1-1467 Len: 1512 Check: 5013 Weight: 1.00 // 1 50 ENSTTRP00000002993/1-1463 MSLVAVPFYQ KRHKHFDQSY RNIQTRYLVD EYAA-KKRAS TQTSSQKSVT bmy_05388T0/1-1008 ---------- -MLVDVEQIY PGREA----- ---------- ---------- BACU013293/1-1466 -----MPFYQ KRHKNFDQSY RNIQTRYLLD EYAA-KKRAS TQTSSQKSVT ENSP00000262113/1-1465 MSLVTVPFYQ KRHRHFDQSY RNIQTRYLLD EYAS-KKRAS TQASSQKSLS ENSBTAP00000012351/1-1467 MSLVAVPFYQ KRHKHFDQSY RNIQTRYLLD EYSAKKKRAS AQSSLQRSVT 51 100 ENSTTRP00000002993/1-1463 QESSSQRESS QTAPGGTTCR LCARRVSSAL EEDEQERKHR YQSLVASYGE bmy_05388T0/1-1008 ---------- ---------- ---------- ---------- -----GCFG- BACU013293/1-1466 QKSSSQRGSS QTAQEGTTCR LCARKVSTAL EEDEQERRHR YQSLVASYAE ENSP00000262113/1-1465 QRSSSQRASS QTSLGGTICR VCAKRVSTQ- EDEEQENRSR YQSLVAAYGE ENSBTAP00000012351/1-1467 RKSSSQRESS RAALGRTTCR LCAKRMSSAL EEEAQERKRR YQSMVAAYGE 101 150 ENSTTRP00000002993/1-1463 AKRQRFLSEL AQLEEDVHLA RTHARDKLDR Y--------A LQHVVDDSLA bmy_05388T0/1-1008 ---SRYI--- ------VSML RGHNERKTTR E--------G LRESTTP--S BACU013293/1-1466 AKRERFLGEL AQLEEEVHLA RTHAQDKLER YALQHADRHG LQHAVDDRLA ENSP00000262113/1-1465 AKRQRFLSEL AHLEEDVHLA RSQARDKLDK Y--------A IQQMMEDKLA ENSBTAP00000012351/1-1467 AKRERYLSEL AQLEEDVHVA RTHARDQLDR L--------A LQHAVDDRLA 151 200 ENSTTRP00000002993/1-1463 WERHLREERL NRAPEILVQL RSHTIWERMS VKLCFTVQGF PTPVVQWYKD bmy_05388T0/1-1008 WKASLLQNAI AGTFSAQIP- --HTVRAAFL VK-CLVSSGY I--------- BACU013293/1-1466 WERHFLEEQL SRAPRILVPL QSHTIWEQMS VGLCFTVQGF PTPVVQWYKD ENSP00000262113/1-1465 WERHTFEERI SRAPEILVRL RSHTVWERMS VKLCFTVQGF PTPVVQWYKD ENSBTAP00000012351/1-1467 WERHSFEERI SRAPEILVRL RSHTVWERMS VKLCFTVQGF PTPVVQWYKD 201 250 ENSTTRP00000002993/1-1463 GSLICQAGEP GKYKIESKYG VHTLEINRVD FDDTATYSAV ATNVHGQAST bmy_05388T0/1-1008 ---------- ---------- ---------- ---------- ---------- BACU013293/1-1466 GSLICQAEEP GKYRIESKYG VHTLEINRAD FDDTATYSAV ATNVHGQAST ENSP00000262113/1-1465 GSLICQAAEP GKYRIESNYG VHTLEINRAD FDDTATYSAV ATNAHGQVST ENSBTAP00000012351/1-1467 GSLICQAGEP GKYRIDSKYG VHTLEINRAD FDDTATYSAV ATNVHGQVST 251 300 ENSTTRP00000002993/1-1463 NAAVVVRRFR GDEEPLHSVG LPIRVPLPSV IPHMHFDVQF LEKFGVTFRR bmy_05388T0/1-1008 ---------- ---------- -PPPLP---- -------IEI LDEF------ BACU013293/1-1466 NAAVVVRRFR GDEEPFYSVG LPISLPLSSV IPYTHFDVQF LEKFGVTFRT ENSP00000262113/1-1465 NAAVVVRRFR GDEEPFRSVG LPIGLPLSSM IPYTHFDVQF LEKFGVTFRR ENSBTAP00000012351/1-1467 NAAVVVRRFR GDEEPFHSVG LPIGLPLSSV IPYTHFDVQF IEKFGVTFRR 301 350 ENSTTRP00000002993/1-1463 EGETLALKCT LLVTPDLKRV QPRAEWYRDD VLLKESKWIK MFFGDGQALL bmy_05388T0/1-1008 ---------- ---------- ---------- -------WIR FLS------- BACU013293/1-1466 EGETLALKCT LLVTPELKRV QPQAQWYRDD VLLKESQWTK MFFGGGQASL ENSP00000262113/1-1465 EGETVTLKCT MLVTPDLKRV QPRAEWYRDD VLLKESKWTK MFFGEGQASL ENSBTAP00000012351/1-1467 EGETLTLKCT LLVTPDLKRV QPRAEWYRDD VLLKESKWTK MFFGEGQASL 351 400 ENSTTRP00000002993/1-1463 SFSHLNKDDE GLYTLRIVSR GGVSDHSAYL FVRDADPLVT GAPGAPMDLQ bmy_05388T0/1-1008 ---------- --YEL----- ---------- ---------- ---------- BACU013293/1-1466 SFSHLNKDDE GLYTLRIVSR GGVHDHSAFL FVRDADPLVT GAPGAPMDLQ ENSP00000262113/1-1465 SFSHLHKDDE GLYTLRIVSR GGVSDHSAFL FVRDADPLVT GAPGAPMDLQ ENSBTAP00000012351/1-1467 SFSHLNKDDE GLYTLRIVSR GGITDHSAFL FVRDADPLVT GAPGAPMDVH 401 450 ENSTTRP00000002993/1-1463 CHDVNRDYVI VTWKPPNTTK ESPVIGYFVD RXXXXXXXXX XXXXXXXXXX bmy_05388T0/1-1008 ---------- ---------- ---------- ---------- ---------- BACU013293/1-1466 CHDVNRDYVI VTWKPPNTTK ESPVIGYFID RCEVGTDSWV QCNDRPVKIC ENSP00000262113/1-1465 CHDANRDYVI VTWKPPNTTT ESPVMGYFVD RCEVGTNNWV QCNDAPVKIC ENSBTAP00000012351/1-1467 CHDVNRDYVI VTWKPPNATK ESPVIGYFID RCEVGTDNWI QCNDAPVKIC 451 500 ENSTTRP00000002993/1-1463 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05388T0/1-1008 ---------- -AYI------ ---------- ---------- ---------- BACU013293/1-1466 KYPVTGLFEG KSYIFRVRAV NSVGISRPSR VSEAVVALDP LDLKPLQAVH ENSP00000262113/1-1465 KYPVTGLFEG RSYIFRVRAV NSAGISRPSR VSDAVAALDP LDLRRLQAVH ENSBTAP00000012351/1-1467 KYPVTGLFEG RSYIFRVRAV NSAGISRPSR VSEAVAALDP VDLRRLQAVH 501 550 ENSTTRP00000002993/1-1463 XXXXXXXXXX XXXXXXDVQV PGPPTNVHAS EISRTYVVLS WDPPAPRGKE bmy_05388T0/1-1008 --GNK----- -----SEVQV PGPPTNVHAS EISRTYVVLS WDPPAPRGKE BACU013293/1-1466 WEGDKEILIY KEDLEGEVQL PGPPTNVHAS EISRAYVVLS WDPPAPRGKE ENSP00000262113/1-1465 LEGEKEIAIY QDDLEGDAQV PGPPTGVHAS EISRNYVVLS WEPPTPRGKD ENSBTAP00000012351/1-1467 LEGEKDIVVY QEELEGEVQI PGPPTNVHAS ETSRTYVVLS WDPPEPRGKE 551 600 ENSTTRP00000002993/1-1463 PLMYFIEKSV VGSGSWQRVN AQTAVRSPRY AVFDLAEGKP YVFRVLSANK bmy_05388T0/1-1008 PLMYFIEKSV VGSGSWQRVN AQMAVRSPRY AVFDLAEGKP YVFRVLSANK BACU013293/1-1466 PLMYFIEKSV VGSGSWQRVN AQMAVRSPRY AVFDLAEGKP YVFRVLSANK ENSP00000262113/1-1465 PLMYFIEKSV VGSGSWQRVN AQTAVRSPRY AVFDLMEGKS YVFRVLSANR ENSBTAP00000012351/1-1467 PLMYFIEKSM VGSGSWQRVN AQTAVRSPRY AVFDLAEGKP YVFRVLSANK 601 650 ENSTTRP00000002993/1-1463 HGLSDPSEIT APIQAQDTIV VPSAPGRVVT SRNTRTSVVV QWDQPKHEED bmy_05388T0/1-1008 HGLSDPSEIT APVQAQDTIV VPSAPGRVIA SRNTRTSVVV QWDPPKHKED BACU013293/1-1466 HGLSDPSEIT APVQAQDTIV VPSAPGRVVA SRNTRTSVVV QWDPPKHKED ENSP00000262113/1-1465 HGLSEPSEIT SPIQAQDVTV VPSAPGRVLA SRNTKTSVVV QWDRPKHEED ENSBTAP00000012351/1-1467 HGLSDPSEIT APIQAQDTIV VPSAPGRVLA SRNTRTSVVV QWDRPKHEED 651 700 ENSTTRP00000002993/1-1463 LLGYYVDCCV AGSTVWEPCN HKPVGYNRFV VHGLTTGEQY IFRVKAVNAV bmy_05388T0/1-1008 LLGYYVDCCV AGSTVWEPCN HKPIGYNRFV VHGLTTGKQY IFRVKAVNAV BACU013293/1-1466 LLGYYVDCCV AGSTVWEPCN HKPIGYNRFV VHGLTTGKQY IFRVKAVNAV ENSP00000262113/1-1465 LLGYYVDCCV AGTNLWEPCN HKPIGYNRFV VHGLTTGEQY IFRVKAVNAV ENSBTAP00000012351/1-1467 LLGYYVDCSV AGSNVWEPCN HKPIGYNRFV VHGLTTGEQY IFRVKAVNAV 701 750 ENSTTRP00000002993/1-1463 GTSENSQESD VIKVQAALTV PSHPYGITLL NCDGHSMTLG WKVPKFSGGS bmy_05388T0/1-1008 GTSENSQESD VIEVQATLTV PSHPYGINLL NCDGHSMTLG WKMPKFRGDS BACU013293/1-1466 GTSENSQESD VIEVQATLTV PSHPYGINLL NCDGHSMTLG WKMPKFRGDS ENSP00000262113/1-1465 GMSENSQESD VIKVQAALTV PSHPYGITLL NCDGHSMTLG WKVPKFSGGS ENSBTAP00000012351/1-1467 GTSENSQESD VIKVQAALTV PSHPYGITLL NCDGHSMILG WKVPKFSGGS 751 800 ENSTTRP00000002993/1-1463 PILGYYIDKR EAHHKNWHEV NASPLQE-IL TXXX------ ---------- bmy_05388T0/1-1008 PILGYYVDKR EAHHKNWHEV NVSPVQERIL T--------- ---------- BACU013293/1-1466 PILGYYVDKR EAHHKNWHEV NVSPVQERIL TGAGAAWIWR KKEQNQAARQ ENSP00000262113/1-1465 PILGYYLDKR EVHHKNWHEV NSSPSKPTIL TVDG------ ---------- ENSBTAP00000012351/1-1467 PILGYYVDKR EAHHKNWHEV NSSPLKERIL TVEG------ ---------- 801 850 ENSTTRP00000002993/1-1463 ---------- ---------- -XXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05388T0/1-1008 ---------- ---------- ---------- ---------- --PSDPSELF BACU013293/1-1466 TLGSPRAAAL TSLSPREPPH RASQGSLYEF RITATNLVGI GPPSDPSKLF ENSP00000262113/1-1465 ---------- ---------- -LTEGSLYEF KIAAVNLAGI GEPSDPSEHF ENSBTAP00000012351/1-1467 ---------- ---------- -LTEGSLYEF KIAAANMAGI GQPSDPSELF 851 900 ENSTTRP00000002993/1-1463 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05388T0/1-1008 KCEAWTAPEP GPAYDLTFCE VRDTSLVLLW KAPVYSGSSP VSGYFIDYKE BACU013293/1-1466 KCEAWTAPEP GPAYDLMFCE VRDTSLVLLW KAPVYSGSSP VSGYFVDYEE ENSP00000262113/1-1465 KCEAWTMPEP GPAYDLTFCE VRDTSLVMLW KAPVYSGSSP VSGYFVDFRE ENSBTAP00000012351/1-1467 KCEAWTMPEP GPAYDLTFCE VRDTSLVLLW KPPVYSGSSP VSGYFVDYKE 901 950 ENSTTRP00000002993/1-1463 XXXXXXXXXX XXXXXXXXXX VCDLHQGKTY IFRVRAVNAS GVGKPSDTSE bmy_05388T0/1-1008 EDSGEWITFN EAPTAHRYLK VCNLHRGKTY IFRVRAVNES GVGKPSDTSE BACU013293/1-1466 EDSGEWITFN EAPRAHRYLK VCNLHQGKTY IFRVRAVNES GVGKPSDTSE ENSP00000262113/1-1465 EDAGEWITVN QTTTANRYLK VSDLQQGKTY VFRVRAVNAN GVGKPSDTSE ENSBTAP00000012351/1-1467 EDSGEWLTVH ETATPHRYLK VCDLHQGKTY VFRVRAVNAS GVGRPSDTSE 951 1000 ENSTTRP00000002993/1-1463 PVLVEARPGT KEISAGVDEK GDIYLSFDCQ EMTDASHFTW CKSYEDIAGD bmy_05388T0/1-1008 MVLLEARPGT KEISVGVDEE GDIYLSFDCQ EMADTSHFTW CKFYEDIAGD BACU013293/1-1466 MVLVEARPGT KEISVGVDEK GDIYLSFDCQ EMADTSRFTW CKSYEDIAGD ENSP00000262113/1-1465 PVLVEARPGT KEISAGVDEQ GNIYLGFDCQ EMTDASQFTW CKSYEEISDD ENSBTAP00000012351/1-1467 PVLVEARPGT KEVSAGVDEE GNVYLSFDCP EVTDASHFTW CKSYEDIADD 1001 1050 ENSTTRP00000002993/1-1463 ERFKVETVGD HSKLYFKNLD KVDLGTYSVS VSDTDGVSSS FVLDEKEMER bmy_05388T0/1-1008 ERFKIETVGD HSKLYFKNLD KVDLGTYSVS VSDTDGVSSS FVLDEEELKR BACU013293/1-1466 ERFKIETVGD HSKLYFKNLD KVDLGTYSVS VSDTDGVSSS FVLDEEELKR ENSP00000262113/1-1465 ERFKIETVGD HSKLYLKNPD KEDLGTYSVS VSDTDGVSSS FVLDPEELER ENSBTAP00000012351/1-1467 DRFKVETAGD HSKLYFKNLD KEDLGTYSVS VSDTDGVSSS FVLDEEELER 1051 1100 ENSTTRP00000002993/1-1463 LVTLSNEIKH PTIPLKSELA YEIFDKGQVR FWLQAEHLSP DASYRFIIND bmy_05388T0/1-1008 LVALSNEIKN PTIPLKSELA YGISDKGQVR FWLQAEHLSP DASYRFIIND BACU013293/1-1466 LVALSNEIKN PTIPLKSELA YGISDKGQVR FWLQAEHLSP DASYRFIVND ENSP00000262113/1-1465 LMALSNEIKN PTIPLKSELA YEIFDKGRVR FWLQAEHLSP DASYRFIIND ENSBTAP00000012351/1-1467 LKALSNEIKN PTIPLKSELA YEIFDKGQVR FWLQAEHLSP DSSYRFIIND 1101 1150 ENSTTRP00000002993/1-1463 REVSDSETHR IKCDKSTGLI EMVMDQFTIE NEGTYTVQIH DGKAKSQSSL bmy_05388T0/1-1008 GEVTDSETHR IKCDKSTGLI EMVIDEFTIK NEGTYTVQIH DGKAKNQSSL BACU013293/1-1466 GEVTDSETHR IKCDKSTGLI EMVIDEFTIK NEGTYTVQIQ DGKAKNQSSL ENSP00000262113/1-1465 REVSDSEIHR IKCDKATGII EMVMDRFSIE NEGTYTVQIH DGKAKSQSSL ENSBTAP00000012351/1-1467 REVADSETHR IKCDKSTGII EMVMDRFTID NEGTYTVQIQ DGKAKSQSSL 1151 1200 ENSTTRP00000002993/1-1463 VLIGDAFKAV LEEAEFQRKE FLRKQGPHFA EFLHWDVTED CEVRLVCKVA bmy_05388T0/1-1008 VLIGDAFKAV LEEAEFQRKE FLRKQGPHFA EYLHWDVTED CEVRLVCKVA BACU013293/1-1466 VLIGDAFKAV LEEAEFQRKE FLRKQGPHFA EYLRWDVTED CEVRLVC--- ENSP00000262113/1-1465 VLIGDAFKTV LEEAEFQRKE FLRKQGPHFA EYLHWDVTEE CEVRLVCKVA ENSBTAP00000012351/1-1467 VLIGDAFKAV LKEAEFQRKE FLRKQGPHFA EYLHWDVTEE CEVRLVCKVA 1201 1250 ENSTTRP00000002993/1-1463 NTKKETVFKW LKDDALYEPE KLPDLEKGVC ELFLPKLSKK DHGEYKATLK bmy_05388T0/1-1008 NTKKETVFKW LKDDALYEPE KLPDLEKGVC ELLLPKLSKK DRGEYKATLK BACU013293/1-1466 ---------- ---------- ---------- -----KLSKK DRGEYKATLK ENSP00000262113/1-1465 NTKKETVFKW LKDDVLYETE TLPNLERGIC ELLIPKLSKK DHGEYKATLK ENSBTAP00000012351/1-1467 NTKKETVFKW LKDDVLYETE KMPDLEKGVC ELLIPKLSKK DHGEYKATLK 1251 1300 ENSTTRP00000002993/1-1463 DERGQDVSVL EIAGKVYEDM ILAMSRVCGA SASPLKILCT AEEIRLQCFM bmy_05388T0/1-1008 DERGQDVSIL EIADKVYEDM ILAISRVCG- ---------- ---------- BACU013293/1-1466 DERGQDVSIL EIADKVYEDM ILAISRVCGP SASPLKVVCT AEEIRLQCFM ENSP00000262113/1-1465 DDRGQDVSIL EIAGKVYDDM ILAMSRVCGK SASPLKVLCT PEGIRLQCFM ENSBTAP00000012351/1-1467 DDRGQDVSTL EIAGKVYEDM ILAMSRVCGA SASPLKILCT PEGIRLQCFM 1301 1350 ENSTTRP00000002993/1-1463 KYFTEEMKVN W-HKDAKIAS GEHMRVGGSE EMAWLKICEP TEKDKGKYTF bmy_05388T0/1-1008 ---------- ---NDAKIAS SEHMRVGGSE EMAWLRIWEP IEKDKGKYTF BACU013293/1-1466 KYFSEEMKVN WYRNDAKIAS SEHMRVGGSE EMAWLRIWEP TEKDKGKYTF ENSP00000262113/1-1465 KYFTDEMKVN WCHKDAKISS SEHMRIGGSE EMAWLQICEP TEKDKGKYTF ENSBTAP00000012351/1-1467 KYFTEEMKVN WYHKDAKITS SEHMRIGGNE QMAWLQICEP TEKDKGKYTF 1351 1400 ENSTTRP00000002993/1-1463 EIFDGQDTHQ RSLDLSGQAF DEAFAEFQQL KAAAFAEKNR GKVLGGLPDV bmy_05388T0/1-1008 EIFDGKNNHQ RSLDLS--AF DEAFAEFQRL KAQA-ARRPP GFSFSNSPLS BACU013293/1-1466 EIFDGKNNHQ RSLDLS--AF DEALAEFQRL KSAAFAEKNC GKVLGGLPDV ENSP00000262113/1-1465 EIFDGKDNHQ RSLDLSGQAF DEAFAEFQQF KAAAFAEKNR GRLIGGLPDV ENSBTAP00000012351/1-1467 EILDGKKNHQ RSLDLSGQAF DEAFAEFQQL KAAAFAEKNR GKVIGGLPDV 1401 1450 ENSTTRP00000002993/1-1463 VTIMEGKTL- LTCTVFGNPD PEVMWFKNDR DIELSDHFLV KVEQAKYVSM bmy_05388T0/1-1008 AHPLP-KTLN LACTVFGNPD PDVVWFKNDR VIELSDHFLV KVEQSKYVSV BACU013293/1-1466 VTIMEGKTLN LACTVFGNPD PDVVWFKNDR VIELSDHFVV KVEQSKYVSV ENSP00000262113/1-1465 VTIMEGKTLN LTCTVFGNPD PEVIWFKNDQ DIQLSEHFSV KVEQAKYVSM ENSBTAP00000012351/1-1467 VTIMEGKTLN LTCTVFGNPD PEVVWFKNDK DIELSDHFSV KVEQGKYVSM 1451 1500 ENSTTRP00000002993/1-1463 TIKGVTSEDS GKYSIHVKNK YGGEKIDVTV SVYKHGEKIP DVVLPQQAKP bmy_05388T0/1-1008 TIKGVTSEDS GKYSMHVKNK YGGEKIDVTV SVYKHGEQIP DVVLPQQAKP BACU013293/1-1466 TIKGVTSEDS GKYSMHVKNK YGGEKIDVTV SVYKHGEQIP DVVLPQQAKP ENSP00000262113/1-1465 TIKGVTSEDS GKYSINIKNK YGGEKIDVTV SVYKHGEKIP DMAPPQQAKP ENSBTAP00000012351/1-1467 TIKGVTSEDS GKYSIHVKNK YGGEKIDVTV SVYKHGEEIP DVVLPQQAKP 1501 1550 ENSTTRP00000002993/1-1463 KLLPASASSP TQ bmy_05388T0/1-1008 KLIAASTPST TQ BACU013293/1-1466 KVIAASTPST TQ ENSP00000262113/1-1465 KLIPASASAA GQ ENSBTAP00000012351/1-1467 KLLPAAAPSP AH