KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:47 2014 Check: 00 .. Name: ENSTTRP00000013679/1-456 Len: 456 Check: 2313 Weight: 1.00 Name: ENSP00000273371/1-456 Len: 456 Check: 8047 Weight: 1.00 Name: bmy_11745T0/1-422 Len: 456 Check: 6919 Weight: 1.00 Name: ENSBTAP00000012361/1-456 Len: 456 Check: 8489 Weight: 1.00 Name: BACU009300/1-453 Len: 456 Check: 8369 Weight: 1.00 // 1 50 ENSTTRP00000013679/1-456 MAPDPWEGCF WSWGLLLWLS VGSTXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000273371/1-456 MPPGPWESCF WVGGLILWLS VGSSGDAPPT PQPKCADFQS ANLFEGTDLK bmy_11745T0/1-422 MPPDPWEGCF WSWGLLLWLS VGSTGDVPPT PQTKCTDFQN ANLLRGTNLK ENSBTAP00000012361/1-456 MPPDFWERCF WLWGLLLWLS VGSTGDAPPT PQTNCTDFQN ANLLRGTNLK BACU009300/1-453 MPPDPWEGCF WSWGLLLWLS VGSTGDVPPT PQTKCTDFQN ANLLRGTNLK 51 100 ENSTTRP00000013679/1-456 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXALGTKPSW ENSP00000273371/1-456 VQFLLFVPSN PSCGQLVEGS SDLQNSGFNA TLGTKLIIHG FRVLGTKPSW bmy_11745T0/1-422 VQFLLFTPSD PRCGQLVEES SDIQNSGFNA TLGTKLVIHG FRALGTKPSW ENSBTAP00000012361/1-456 VQFLLFTPLD PSCGQLVEES SDIQNSGFNA TLGTKLVIHG FRALGTKPSW BACU009300/1-453 VQFLLFTPSD PRCGQLVEES SDIWNSGFNA TLGTKLVIHG FRALGTKPSW 101 150 ENSTTRP00000013679/1-456 IDKFISALLQ AADANVIAVD WVYGSTGVYF SAVENVVKLG LEISRFLRKL ENSP00000273371/1-456 IDTFIRTLLR ATNANVIAVD WIYGSTGVYF SAVKNVIKLS LEISLFLNKL bmy_11745T0/1-422 IDKFIGALLQ AADVNVIAVD WVYGSTGVYF SAVENVVKLG LEISRFLSKL ENSBTAP00000012361/1-456 IDRFIDALLR AADANVIAVD WVYGSTAAYF SAVENVIKLG LEISRFLRKL BACU009300/1-453 IDKFIGALLQ AADVNVIAVD WVYGSTGVYF SAVENVVKLG LEISRFLSKL 151 200 ENSTTRP00000013679/1-456 LVLGVSESSI HIIGVSLGAH VGGMVGHFYK GQLGQITGLD PAGPEYTRAS ENSP00000273371/1-456 LVLGVSESSI HIIGVSLGAH VGGMVGQLFG GQLGQITGLD PAGPEYTRAS bmy_11745T0/1-422 LVLGVSESSI HIIGVSLGAH VGGMVGHFYK GQLGRITGLD PAGPEYTRAS ENSBTAP00000012361/1-456 LALGVSESSI HIIGISLGAH VGGMVGHFYN GQLGQITGLD PAGPEYTRAS BACU009300/1-453 LALGVSESSI HIIGVSLGAH VGGMVGHFYK GQLGRITGLD PAGPEYTRAS 201 250 ENSTTRP00000013679/1-456 LEERLDPGDA LFVEAIHTDT DNLGIRIPVG HVDYYVNGGQ DQPGCPTSIS ENSP00000273371/1-456 VEERLDAGDA LFVEAIHTDT DNLGIRIPVG HVDYFVNGGQ DQPGCPTFFY bmy_11745T0/1-422 LEERLDPGDA LFVEAIHTDT DNLGIRIPVG HVDYFVNGGQ DQPGCPTSIS ENSBTAP00000012361/1-456 LEERLDPGDA LFVEAIHTDT DNLGIRIPVG HVDYFINGGQ DQPGCPTSIY BACU009300/1-453 LEERLDPGDA LFVEAIHTDT DNLGIRIPVG HVDYFVNGGQ DQPGCPTSIS 251 300 ENSTTRP00000013679/1-456 AGYSYLICDH MRAVHIYISA LENSCPLMAF PCTSYKVFLA GHCLDCFNPF ENSP00000273371/1-456 AGYSYLICDH MRAVHLYISA LENSCPLMAF PCASYKAFLA GRCLDCFNPF bmy_11745T0/1-422 AGYSYLICDH MRAVHLYISA LENSCPLMAF PCTSYKVFLA GHCLDCFNPF ENSBTAP00000012361/1-456 AGYSYLICDH MRAVHLYISA LENSCPLVAF PCTNYKDFLA GQCLDCFNPF BACU009300/1-453 AGYSYLICDH MRAVHLYISA LENSCPLMAF PCTSYKVFLA GHCLDCFNPF 301 350 ENSTTRP00000013679/1-456 LLSCPRIXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000273371/1-456 LLSCPRIGLV EQGGVKIEPL PKEVKVYLLT TSSAPYCMHH SLVEFHLKEL bmy_11745T0/1-422 LLSCPRIGLV EQGGVKIEPL PKEVRVYLLT TSTAPYCEVS LREDFVRVGG ENSBTAP00000012361/1-456 LLSCPRIGLV EQGGVKIEPL PKEVKVYLLT TSMAPYCVHH SLVEFHLQEP BACU009300/1-453 LLSCPRIGLV EQGGVKIEPL PKEVSVYLLT TSTAPYCVHH SLVEFYLQEP 351 400 ENSTTRP00000013679/1-456 XXXXXXXXXX XXXXXXXXXX XXXXPRQQRH GKGIIAHPSP QCQINQVKLK ENSP00000273371/1-456 RNKDTNIEVT FLSSNITSSS KITIPKQQRY GKGIIAHATP QCQINQVKFK bmy_11745T0/1-422 RAAGTRHPVS TSSSRAASRR LLSV-RTAR- ------EPEE HLEVKG---- ENSBTAP00000012361/1-456 RNKDTCITVT FLSSSVTSSV KITIPRHQRV GKGVLAHPSP QCQINQVKLK BACU009300/1-453 RNKDTCITVT FLSSSVTSLV KITIPRQQRH GKGIIAHPSP QCQINQVKLK 401 450 ENSTTRP00000013679/1-456 FQPSNRVWKK DRTIVIGMFC TAPLPVHDNR RTVCLPEPVN LQASETVSHD ENSP00000273371/1-456 FQSSNRVWKK DRTTIIGKFC TALLPVNDRE KMVCLPEPVN LQASVTVSCD bmy_11745T0/1-422 ---------- ----IFRSLL RTPSPFPQKD GCVCLKTSAG LPPL-----S ENSBTAP00000012361/1-456 LQASHRVWKK DQTTIIGRFC TAPLPVNDNK KMVCLPEPVN LQASETVSHD BACU009300/1-453 FQPSHRVWKK DRTVIIGKFC TAPLPINDKS ASVVVCDCKL GIRLIGIRHN 451 500 ENSTTRP00000013679/1-456 LKITCI ENSP00000273371/1-456 LKIACV bmy_11745T0/1-422 LPL--- ENSBTAP00000012361/1-456 LKITCI BACU009300/1-453 VYP---