KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:48 2014 Check: 00 .. Name: ENSP00000264668/1-725 Len: 756 Check: 525 Weight: 1.00 Name: ENSBTAP00000012372/1-695 Len: 756 Check: 1781 Weight: 1.00 Name: ENSTTRP00000004080/1-721 Len: 756 Check: 5996 Weight: 1.00 Name: bmy_19523T0/1-565 Len: 756 Check: 238 Weight: 1.00 Name: BACU014706/1-564 Len: 756 Check: 1923 Weight: 1.00 // 1 50 ENSP00000264668/1-725 MGAASVRAGA RLVEVALCSF TVTCLEVMRR FLLLYATQQG QAKAIAEEIC ENSBTAP00000012372/1-695 ---------- ---------- ------M-RR FLLLYATQRG QAKAIAEEIS ENSTTRP00000004080/1-721 ---VCAGAGA GVVVPALCSV TVTCFEV-MR FLLLYATQRG QAKAIAEEIS bmy_19523T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU014706/1-564 ---------- ---------- ------M-KR FLLLYASQRG QAQAIAEDIS 51 100 ENSP00000264668/1-725 EQAVVHGFSA DLHCISESDK YDLKTETAPL VVVVSTTGTG DPPDTARKFV ENSBTAP00000012372/1-695 EKAVTYGFSA DLHCISESDK YDLKTETAPL VMVVSTTGNG DPPDTARKFV ENSTTRP00000004080/1-721 EKAVAYGFSA DLHCISESHK YDLKTETAPL VVVVSTTGDG DLPDTARKFV bmy_19523T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU014706/1-564 EKAVAYGFSA DLHCISESHK YDLKTERAPL VVVVSTTGNG DPPDTARKFV 101 150 ENSP00000264668/1-725 KEIQNQTLPV DFFAHLRYGL LGLGDSEYTY FCNGGKIIDK RLQELGARHF ENSBTAP00000012372/1-695 KAIKDKTLPP DFLAHLRYGL LGLGDSEYTY FCNGGKVIDK RLQELGAQRF ENSTTRP00000004080/1-721 KAIQGQTLPG DFFAHLWYGL LSLGDSEYTY FCNGGKIIDK RFQELGAQRF bmy_19523T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU014706/1-564 KAIQDKTLPS DFLAHLWYGL LGLGDSEYTY FCNGGKIIDK RFQELGAQRF 151 200 ENSP00000264668/1-725 YDTGHADDCV GLELVVEPWI AGLWPALRKH FRSSRGQEEI SGALPVASPA ENSBTAP00000012372/1-695 YDTGHADDCV GLELVVEPWI NGLWAALEKH FLSNRGREDT SETLTMASHA ENSTTRP00000004080/1-721 YDTGHADDCV GLELVVEPWI NGLWAALAKH FLLSKGKEGM NGTLTMASNA bmy_19523T0/1-565 ---------- ---------- ---------- ---------M NGTLTMASNA BACU014706/1-564 YDTGHADDCV GLELVVEPWI NGLWAALAKH FLLSRGKEEM NGTLTMASNA 201 250 ENSP00000264668/1-725 SSRTDLVKSE LLHIESQVEL LRFDDSGRKD SEVLKQNAVN SNQSNVVIED ENSBTAP00000012372/1-695 SR--DAVTPE LLHVESQVGL LKLDDSGGKA AKVLEQNAVN SNQSSTLIVD ENSTTRP00000004080/1-721 SRTTDPVTPE LLHIESQVGL LRLDDSRRKD AEVLEQNAVD RGQSNTLVLD bmy_19523T0/1-565 SRRTDPVTPE LLHIESQVGL LRLDDSRRKD AEVLEQNAVN RGQSNTLIAD BACU014706/1-564 SRRTDPVTPE LLHIESQVGL LRLDGSRRKD AEVLEQNAVN RGQSNTLIAD 251 300 ENSP00000264668/1-725 FESSLTRSVP PLSQASLNIP GLPPEYLQVH LQESLGQEES QVSVTSADPV ENSBTAP00000012372/1-695 FEASLTHSVP PLSQASLNIP SLPPEYLEVH LEEALGQEES HASVSLVDPV ENSTTRP00000004080/1-721 FEPSLARSIP PLSQASLNIP ALPPEYLQVH LEESFGQEES QAPVTSVDPI bmy_19523T0/1-565 FEPSLTRSIP PLSQASLNIP ALPPEYLQVH LEESFGQEES QAPVTSVDPI BACU014706/1-564 FEPSLIRSIP PLSQASLNIP ALPPEYLQVH LEESFGQEES QAPVTSVDPV 301 350 ENSP00000264668/1-725 FQVPISKAVQ LTTNDAIKTT LLVELDISNT DFSYQPGDAF SVICPNSDSE ENSBTAP00000012372/1-695 FHVPVSKAVQ LTTNDAIKTT LLIELDISKT DFSYQPGDAF NVICPNSDSE ENSTTRP00000004080/1-721 FHVPISKAVQ LTTNDAIKTT LLIELDISXX XXXXXXXXXX XXXXXXXXXX bmy_19523T0/1-565 FHVPISKAVQ LTMNDAIKTT LLXELDISKT DFSYQPGDAF NVICPNSDSE BACU014706/1-564 FHVPISKAVQ LTMNDAIKTT LLIELDIS-- ---------- ---------- 351 400 ENSP00000264668/1-725 VQSLLQRLQL EDKREHCVLL KIKADTKKKG ATLPQHIPAG CSL------- ENSBTAP00000012372/1-695 VQFLLQRLQL ADRREHHVAV TIKADTRKKG AALPQHVPER CSL------- ENSTTRP00000004080/1-721 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX AALPQHIPEK CSL------- bmy_19523T0/1-565 VQHLLQRLQL TDRREHCVIL NIKADTKKKG TALISYFP-G CHWARGLEEQ BACU014706/1-564 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000264668/1-725 ---------- ---------- ---QFIFTWC LEIRAIPK-K AFLRALVDYT ENSBTAP00000012372/1-695 ---------- ---------- ---QFLLTWC LEIRAVPK-K AFLRALADHT ENSTTRP00000004080/1-721 ---------- ---------- ---QFLLTWC LEIRAVPK-K XXXXXXXXXX bmy_19523T0/1-565 PCPSMYPRSV LSSSFLPGAL KYERFLRRAR GDLSRLPRPQ AFLRALVDHA BACU014706/1-564 ---------- ---------- ---------- ---------- AFLRALVDHT 451 500 ENSP00000264668/1-725 SDSAEKRRLQ ELCSKQGAAD YSRFVRDACA CLLDLLLAFP SCQPPLSLLL ENSBTAP00000012372/1-695 GDSAERRRLQ ELCSRQGAAD YTRFVREAGA CLSDLLRAFP SCQPPLGLLL ENSTTRP00000004080/1-721 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXL bmy_19523T0/1-565 GDGAEKRRLQ ELCSRQGAAD YNRFVRDSRA CLLDLLLAFP SCQPPLGLLL BACU014706/1-564 GDGAEKRRLQ ELCSRQGAAD YNRFVRDSRA CLLDLLLAFP SCQPPLGLLL 501 550 ENSP00000264668/1-725 EHLPKLQPRP YSCASSSLFH PGKLHFVFNI VEFLSTATTE VLRKGVCTGW ENSBTAP00000012372/1-695 EHLPKLQPRP YSCASSSLFH PGKLHFIFNI VEFLSNTTEV ILRRGVCTGW ENSTTRP00000004080/1-721 DHLHKIQPRP YSCASSSLFH PGKLHFIFNI VEFGSDTTAV TLRKGVCTGW bmy_19523T0/1-565 EHLPKLQPRP YSCASSSLFH PGKLHFIFNI VEFWSDTTAV ALRKGVCTGW BACU014706/1-564 EHLPKLQPRP YSCASSSLFH PGKLHFIFNI VEFWSDTTAV ALRKGVCTGW 551 600 ENSP00000264668/1-725 LALLVASVLQ PNIHASHEDS GKALAPKISI SPRTTNSFHL PDDPSIPIIM ENSBTAP00000012372/1-695 LATLVESILQ PYMCANHVDG KKALAPKISI SPRTTNSFHL PNDPSVPIIM ENSTTRP00000004080/1-721 LATLVESVLQ PNTGASRADG EKALAPEISI SPRATNFFHL PNDPSVPIIM bmy_19523T0/1-565 LAALVESVLQ PNTHASRADG EKALAPEISI SPRATNFFHL PNDLSVPIIM BACU014706/1-564 LAALVESVLQ PNTHASRADG EKALAPEISI SPRATNFFHL PNDPSVPIIM 601 650 ENSP00000264668/1-725 VGPGTGIAPF IGFLQHREKL QEQHPDGNFG AMWLFFGCRH KDRDYLFRKE ENSBTAP00000012372/1-695 VGPGAGVAPF IGFLQHREKL QEQHPGGHFG ATWLFFGCRH KERDYLFRDE ENSTTRP00000004080/1-721 VGPGTGIAPF IGFLQHREKL QEHHPDGHFG AMWLFFGCRH KDRDYLFREE bmy_19523T0/1-565 VGPGTGIAPF IGFLQHREKL REHHPDGHFG AMWLFFGCRH KDRDYLFREE BACU014706/1-564 VGPGTGIAPF IGFLQH---- ---------- ---------- ---------- 651 700 ENSP00000264668/1-725 LRHFLKHGIL THLKVSFSRD APVGEEEAPA KYVQDNIQLH GQQVARILLQ ENSBTAP00000012372/1-695 LRHFLKCGVL THLEVSFSRD VAVGEEEGPA KYVQDSLQRH SKQVAGVLLQ ENSTTRP00000004080/1-721 LRHFLKCGIL THLKVSFSRD APVGEEEAPA KYVQDSIQRH SKQVARVLLQ bmy_19523T0/1-565 LRHFLKCGIL THLKVSFSRD APVGEEEAPA KYVQDSIQRH SKQVARVLLQ BACU014706/1-564 ---------- --------RD APVGEEEAPA KYVQDSIQRH SEQVARVLLQ 701 750 ENSP00000264668/1-725 ENGHIYVCGD AKNMAKDVHD ALVQIISKEV GVEKLEAMKT LATLKEEKRY ENSBTAP00000012372/1-695 DSGYVYVCGD AKNMAKDVHD ALVEIISRET GVEKLEAMKT LATLKEEKRY ENSTTRP00000004080/1-721 ENGHVYVCGD AKNMAKDVND VLVEIISKEV GVEKLEAMKT LATLKEEKRY bmy_19523T0/1-565 ENGHVYVCGD AKNMAKDVND VLVEIISKEV GVEKLEAMKT LATLKEEKRY BACU014706/1-564 EDGHVYVCGD AKNMAKDVND VLVEIISKEV GVEKLEAMKT LATLKEEKRY 751 800 ENSP00000264668/1-725 LQDIWS ENSBTAP00000012372/1-695 LQDIW- ENSTTRP00000004080/1-721 LQDIWK bmy_19523T0/1-565 LQDIW- BACU014706/1-564 LQDIW-