KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:49 2014 Check: 00 .. Name: ENSTTRP00000009323/1-729 Len: 1496 Check: 9566 Weight: 1.00 Name: bmy_06096T0/1-1407 Len: 1496 Check: 2329 Weight: 1.00 Name: BACU007439/1-215 Len: 1496 Check: 495 Weight: 1.00 Name: ENSP00000265708/1-735 Len: 1496 Check: 5540 Weight: 1.00 Name: ENSBTAP00000012384/1-746 Len: 1496 Check: 9851 Weight: 1.00 // 1 50 ENSTTRP00000009323/1-729 ---------- ---------- ---------- ---------- ---------- bmy_06096T0/1-1407 MSQRKSRRRS RGVKFFSSCS MDEFKHTASQ PEFECLQNQT VSKVVPQGRV BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012384/1-746 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000009323/1-729 ---------- ---------- ---------- ---------- ---------- bmy_06096T0/1-1407 SVCGNGVLEP PEQCDCGGPE IWYNPEMTYY CGEESKAVLE VLPNEIEMNF BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012384/1-746 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000009323/1-729 ---------- ---------- ---------- ---------- ---------- bmy_06096T0/1-1407 HCSHKKCCDA LTCFLIGDAE CGTGPCCDRK TCQIAERGIV CRKSTDMCDF BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012384/1-746 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000009323/1-729 --------MW CL-------- ---------- ---------- ---------- bmy_06096T0/1-1407 PEFCNGIAEF CVPDVKSADL ELCNNKTAFC YQGICQDTDK QCAELFGKCN BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 --------MW RV-------- ---------- ---------- ---------- ENSBTAP00000012384/1-746 --------ML CL-------- ---------- ---------- ---------- 201 250 ENSTTRP00000009323/1-729 ---------- ---------- ---------- ---------- ---------- bmy_06096T0/1-1407 VSKGASALCS QEVNMHTDDF GNCNGRFCNY RDIYCGKLVC LWTRTEVVPF BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012384/1-746 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000009323/1-729 ---------- ---------- ---------- ---------- ---------- bmy_06096T0/1-1407 KNFDTQYTFL GGIVCLSAHL RNSAPITFLD DYTYVKNGTM CGPNQFCNRG BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012384/1-746 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000009323/1-729 ---------- ---------- ---------- ---------- ---------- bmy_06096T0/1-1407 SCTDVTVRSD ATCISKIKCH GHGVCNTRHN CHCDVGYAPP QCEPTPSSPG BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012384/1-746 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000009323/1-729 ---------- ---------- ---------- ---------- ---------- bmy_06096T0/1-1407 GSINDGFWLT SGKSTDMLVK RRGASRKNGL VISFYVVLPF LILIPIIALK BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012384/1-746 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000009323/1-729 -----LFLLL GLIGLQTDDX ---------- ---------- ---------- bmy_06096T0/1-1407 WNKMKMFWST VSGGLTLGKN QTLEYMIPEW HIESKVDIDL YQKTAVGTVT BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 -----LFLLS GLGGLRMDSN ---------- ---------- ---------- ENSBTAP00000012384/1-746 -----LFLLL GLTGLQTDDN ---------- ---------- ---------- 451 500 ENSTTRP00000009323/1-729 ---------- ---------- ---------X XXXXXXXXXX XXXXXXXXXX bmy_06096T0/1-1407 ATCLTVKVPQ YKEVFSCQQY FMVILRSCLK NWTHSFDKLP HQKLERCVVP BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 ---------- ---------- ---------- -----FDSLP VQ----ITVP ENSBTAP00000012384/1-746 ---------- ---------- ---------- -----SERLR VQ----FTVP 501 550 ENSTTRP00000009323/1-729 XXX------- ---------- ---------- ---------- ---------- bmy_06096T0/1-1407 EEISQICPND TRLQKVLFLQ PCLSEMILRF LSRKAESQGV EASSCIDLRA BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 EKI------- ---------- ---------- --RSIIKEGI ES-------- ENSBTAP00000012384/1-746 EKI------- ---------- ---------- --RSTSSGGV ET-------- 551 600 ENSTTRP00000009323/1-729 ---------- ---------- ---------- ---------- ---------- bmy_06096T0/1-1407 KVAHVERCTA GSLSTLRCSP SRLPPAKEVG IEIQKGYVCK LQFQRKYGQR BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012384/1-746 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000009323/1-729 ---------- XVSYNIVIEG KTYTVNLMQK VFLPHNFRVY GYNGTGSMKP bmy_06096T0/1-1407 QVEELKHTKK EVSYKIVIEG KTYTVNLMQK AFLPHNFRIY GYNGTGSMKP BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 ---------- QASYKIVIEG KPYTVNLMQK NFLPHNFRVY SYSGTGIMKP ENSBTAP00000012384/1-746 ---------- HVSYIILIEG KTYTVNLMQK AFLPHNFRVY GYSGTGSMKP 651 700 ENSTTRP00000009323/1-729 LEQQFQDLCY YQGYIEGYPN SMVIVSTCTG LRGLLQFENV SYGIEPLEPS bmy_06096T0/1-1407 LEQQFQNLCY YQG------- ---------- --GLLQFENV SYGIEPLDPS BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 LDQDFQNFCH YQGYIEGYPK SVVMVSTCTG LRGVLQFENV SYGIEPLESS ENSBTAP00000012384/1-746 LEHEFQNFCY YQGYIEGYPN SMAIISTCTG LRGLLQFENV SYGIEPLEPS 701 750 ENSTTRP00000009323/1-729 IGFEHVIYQV KHRNTGAPLY AEKDIESREK PYKIQSVEPP ADFSQYIEMH bmy_06096T0/1-1407 IGFEHVIYQV KHRNTGASLY AEKDIESREK PYKIQSVEPL AEFSQYIEMH BACU007439/1-215 ---------- ---------- ---------- ---------M EDFAHFL--- ENSP00000265708/1-735 VGFEHVIYQV KHKKADVSLY NEKDIESRDL SFKLQSVEPQ QDFAKYIEMH ENSBTAP00000012384/1-746 IGFEHMVYQI KPRDSSSSVY TEREIELREK PYKIQNVEPL PDFSQYIEMH 751 800 ENSTTRP00000009323/1-729 VVVEKNLYNH MGSDTTVVTQ KIFQLIGLTN AIFDSFNITI ILSSLELWID bmy_06096T0/1-1407 VVVEKNLYNR MGSDTTVVTQ KIFQLIGLTN AIFDSFNITI ILSSLELWID BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 VIVEKQLYNH MGSDTTVVAQ KVFQLIGLTN AIFVSFNITI ILSSLELWID ENSBTAP00000012384/1-746 IVVEKDLYNH MGADTTVVIQ KIFQLTGLTN AIFTSLNITV ILSSLELWID 801 850 ENSTTRP00000009323/1-729 ENKIQVTGDA NELLRRFLKW KQSYLVLRPH DVAFLLVXXX XXXXXXXXXX bmy_06096T0/1-1407 ENKIPVTGDA SELLHRFLKW KRSYLVLRPH DVAFLLVYRE KPNYVGATVQ BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 ENKIATTGEA NELLHTFLRW KTSYLVLRPH DVAFLLVYRE KSNYVGATFQ ENSBTAP00000012384/1-746 ENKIPVTGDA NELLHRFVKW KRSYLVLRPH DMAFLLVYRE KSNYIGATFQ 851 900 ENSTTRP00000009323/1-729 XXXXXXXXXX XXXXHPRTIS LESLAVIMAQ LLSLSMGITY DDINKCHCPG bmy_06096T0/1-1407 GRLCDKYHGG GVALHPRTIS LESLAVIIAQ LVSLSMGITY DDINKCHCPG BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 GKMCDANYAG GVVLHPRTIS LESLAVILAQ LLSLSMGITY DDINKCQCSG ENSBTAP00000012384/1-746 GRMCDKHYGG GVALHSSTIS LESLAVIIAQ LLSLSMGIPY DDINKCHCPG 901 950 ENSTTRP00000009323/1-729 AVCVMNPEAI HSSGVKIFSN CSMEDFAHFI SKSQSQCLQN QPRLGSTYK- bmy_06096T0/1-1407 AVC------- ---------- ---------- ---------- ---------- BACU007439/1-215 ---------- ---------- ---------- -KSNSQCLQN QPRLEPTYK- ENSP00000265708/1-735 AVCIMNPEAI HFSGVKIFSN CSFEDFAHFI SKQKSQCLHN QPRLDPFFKQ ENSBTAP00000012384/1-746 DVCIMNPAAV HSSGVKLFSN CSVEDFLRFI SKPKSQCLQN QPRLDPTYK- 951 1000 ENSTTRP00000009323/1-729 VAVCGNGEVE EGEQCDCGAG -GCAALPDPC CNQATCRLNV GSACATGPCC bmy_06096T0/1-1407 ---------- ---------- -ACAALPDSC CNQDTCRLNV GSACATGPCC BACU007439/1-215 VAVCGNGEVE EGEQCDCGNQ ---------- ---------- ---------- ENSP00000265708/1-735 QAVCGNAKLE AGEECDCGTE QDCALIGETC CDIATCRFKA GSNCAEGPCC ENSBTAP00000012384/1-746 SAVCGNGKVE EGEQCDCGNK KACDALPDTC CVADTCRFQP GSACDTGLCC 1001 1050 ENSTTRP00000009323/1-729 NACAFIAKGQ VCRASTDECD LSEYCNGTSA ACQEDLYVQD GHPCAENQWI bmy_06096T0/1-1407 DACAFIAKGQ VCRVSTDECD LSEYCNGTSA ACQEDLYVQD GHPCAENQWV BACU007439/1-215 ---EFIAKGQ VCRVSTDECD LSEYCNGTSA ACQEDLYVQD GHPCAENQWV ENSP00000265708/1-735 ENCLFMSKER MCRPSFEECD LPEYCNGSSA SCPENHYVQT GHPCGLNQWI ENSBTAP00000012384/1-746 ESCAFIPKGH ICRGSTDECD LHEYCNGSSA ACQEDVYVQD GHPCGQNQWL 1051 1100 ENSTTRP00000009323/1-729 CVNGKCMNGI KQCLEIFGEG SGFGTQECFD QLNSKTDPSG NCGSNASGYT bmy_06096T0/1-1407 CVNGKCMNGI KQCSEIFGEG SGFGTQECFD QLNSKTDPSG NCGSTASGYT BACU007439/1-215 CVNGRCMNGI KQCSEIFGEG SGFGTQECFD QLNSKTDPSG NCGSTASGYT ENSP00000265708/1-735 CIDGVCMSGD KQCTDTFGKE VEFGPSECYS HLNSKTDVSG NCGISDSGYT ENSBTAP00000012384/1-746 CISGICVDGI KQCFDIFGEG TSYAPAECFQ RLNSMNDLSG NCGVTPTGFT 1101 1150 ENSTTRP00000009323/1-729 QCNPKDVRCG KLLCTYAKEL L--IPNATVL YSNIDGNICV GLEYAYDDKD bmy_06096T0/1-1407 QCNPKDVRCG KLLCTYDKGI IINIPNATVL YSNIDGHICV GLEYAYDDKD BACU007439/1-215 QCNPKDVRCG KLLCTYDKGI IINIPNATVL YSNIDGHICV GLEYAYDDKD ENSP00000265708/1-735 QCEADNLQCG KLICKYVGKF LLQIPRATII YANISGHLCI AVEFASDHAD ENSBTAP00000012384/1-746 PCTSENVRCG KLLCTYDKRE VISVENASVM YSNINGKICI GLHYEYGNED 1151 1200 ENSTTRP00000009323/1-729 SGNMWVKDGT VCGLNKVCKN KKCVDSSFLN YDCTPEKCHN QGLCNNKRHC bmy_06096T0/1-1407 SGNMWVKDGT VCGLNKVCKN KECVDSSVLN YDCTPEKCHH QGLCNNKRHC BACU007439/1-215 SGNMWVKDGT VCGLNK---- ---------- ---------- ---------- ENSP00000265708/1-735 SQKMWIKDGT SCGSNKVCRN QRCVSSSYLG YDCTTDKCND RGVCNNKKHC ENSBTAP00000012384/1-746 EGMMWVKDGT VCGESKITRH KHILHNNFCH ITCRFRQNIY LVKFNTLKHC 1201 1250 ENSTTRP00000009323/1-729 -HCNPTYLPP NCLASLESWE GGSIDSGNFP PSVPGLPXXX XXXXXXXXXX bmy_06096T0/1-1407 -HCNPTYLPP NCQVSLDSWE GGSIDSGNFP PSVPGLPDRL PG-NWKVRVR BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 -HCSASYLPP DCSVQSDLWP GGSIDSGNFP PV-------- ---AIPARLP ENSBTAP00000012384/1-746 LNCNFKLLPV LTGKRIGGSE GGKLPLSMLP PSHPGAEFPK FGEVIKNPLK 1251 1300 ENSTTRP00000009323/1-729 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ---------- bmy_06096T0/1-1407 PKTSLENKES MVSQIIIFDG EEKWKRKHFF HPLITYSDFL FISLLGSVTD BACU007439/1-215 ---------- ---------- ---------- ------GVFL MS-------- ENSP00000265708/1-735 ERRYIEN--- -----IYHSK PMRWPFFLFI PFFIIFCVLI AI-------- ENSBTAP00000012384/1-746 ESRYIEN--- -----VYRSK PTRWPFFLFI PFFIILCVLI AT-------- 1301 1350 ENSTTRP00000009323/1-729 ---------- ---------- ---------- ---------- ---------- bmy_06096T0/1-1407 SHEAHGQYDY LDRGFRGSNM YITKSTGLYL YKFGQEECTS LILKFTEDEN BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012384/1-746 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSTTRP00000009323/1-729 ---------- ---------- ---------- ---------- ---------- bmy_06096T0/1-1407 RKKNQTKILS ITSNMPLIII YFLASQNSPD TKLMISGRIA ALNIDMFLIY BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 ---------- ------MVKV NFQRKK---- ---------- ---------- ENSBTAP00000012384/1-746 ---------- ------LVKV YFQRKK---- ---------- ---------- 1401 1450 ENSTTRP00000009323/1-729 ---------- ---------- ---------- ---------- ---------- bmy_06096T0/1-1407 FYSCQDYQSA YDHSSLDVYN SGNKCFVTQS CMIRKVVPEA SLVCPDFTVM BACU007439/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000265708/1-735 -WRTEDYSSD ---------- ---------- ---------- ---------- ENSBTAP00000012384/1-746 -WRTEDYTSD ---------- ---------- ---------- ---------- 1451 1500 ENSTTRP00000009323/1-729 ---------- ---------- ---------- ----XQVESE SETKD- bmy_06096T0/1-1407 LAPYCRNHIL HPIPTLHCHT SSSVCKLAHQ EGFYEDIQGQ NVQQNI BACU007439/1-215 ---------- ---------- ---------- ---------- ------ ENSP00000265708/1-735 ---------- ---------- ---------- ----EQPESE SEPKG- ENSBTAP00000012384/1-746 ---------- ---------- ---------- ----EQLESE SEPKD-