KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:50 2014 Check: 00 .. Name: ENSP00000368459/1-495 Len: 496 Check: 1839 Weight: 1.00 Name: ENSBTAP00000012392/1-492 Len: 496 Check: 1516 Weight: 1.00 Name: ENSTTRP00000014138/1-494 Len: 496 Check: 9023 Weight: 1.00 Name: bmy_20949T0/1-250 Len: 496 Check: 8059 Weight: 1.00 Name: BACU012177/1-342 Len: 496 Check: 6179 Weight: 1.00 // 1 50 ENSP00000368459/1-495 MAEPTSDFET PIGWHASPEL TPTLGPLSDT APPRDSWMFW AMLPPPPPPL ENSBTAP00000012392/1-492 MGEPAGGAVP PAAWFPAPEL TPTLGPLRDR ASRPNNWMLW AM---PPPP- ENSTTRP00000014138/1-494 MGEPASGCVT RTGWVSAPEV TPTLEPLSDG ASLPDNWMFW AMLPAPPPP- bmy_20949T0/1-250 ---------- ---------- ---------- ---------- ---------- BACU012177/1-342 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000368459/1-495 TSSLPAAGSK PSSESQPPME AQSLPGAPPP FDAQILPGAQ PPFDAQSPLD ENSBTAP00000012392/1-492 PSSLPAAGSE PALEAQPHEE ARTFPGAPPP FDAHILPGAQ PPFDAQSPLD ENSTTRP00000014138/1-494 PSSLPAGGSE LSSKAQPPAE ARSLPEAPPP FDAQILPGAQ PPFDAQSPLD bmy_20949T0/1-250 ---------- ---------- ---------- ---------- ---------- BACU012177/1-342 MASLPGIS-- ---------- ---------- ---------- ---------- 101 150 ENSP00000368459/1-495 SQPQPSGQP- WNFHASTSWY WRQSSDRFPR HQKSFNPAVK NSYYPRKYDA ENSBTAP00000012392/1-492 SQPQPNGQPS WNFQASASRY WTQSPGGFPW HQQPHSTPVK HTYFPRKHDA ENSTTRP00000014138/1-494 SQRQLNGQPS WNFQASTSWY WTQSPGVLPW HRQPHNTPVK HSYLPRKHDA bmy_20949T0/1-250 ---------- ---------- ---------- ---------- ---------- BACU012177/1-342 ---------- ---------- ------RLQH HGTGHSLLV- ---------- 151 200 ENSP00000368459/1-495 KFTDFSLPPS RKQKKKKRKE PVFHFFCDTC DRGFKNQEKY DKHMSEHTKC ENSBTAP00000012392/1-492 RVNDFSVSPR RKQKKKKRKE PVFHYFCDTC DRGFKNQEKY DTHMSEHTEC ENSTTRP00000014138/1-494 KVNDFNMSPR R-QKKRKRKE PVFHYFCDTC DRGFKNQEKY DKHMSEHMKC bmy_20949T0/1-250 ---------- ---------- ---------- ---------- ---------- BACU012177/1-342 ----FFLGIG SPTTLRKRKE PVFHYFCDTC DRGFKNQEKY DKHMSEHMK- 201 250 ENSP00000368459/1-495 PELDCSFTAH EKIVQFHWRN MHAPGMKKIK LDTPEEIARW REERRKNYPT ENSBTAP00000012392/1-492 PEVDCSFSAH EKIVQFHWRN MHAPGMKKIK LDTPEEIARW REERRKNYPT ENSTTRP00000014138/1-494 PEVDCSFSAH EKIVQFHWRN THAPGMKKIK LDTPEEIARW REERRKNYPT bmy_20949T0/1-250 ---------- ---------- ---------- ---------- ------NYPT BACU012177/1-342 ---------- ---------- THAPGMKKIK LDTPEEIARW REERRKNYPT 251 300 ENSP00000368459/1-495 LANIERKKKL KLEKEKRGAV LTTTQYGKMK GMSRHSQMAK IRSPGKNHKW ENSBTAP00000012392/1-492 LANIERKKKL KLEKEKRGAV LTTTQYGKMK GMTRHSQMAK IQSPGKHHKW ENSTTRP00000014138/1-494 LANIERKKKL KIEKEKRGAV LTTTQYGKMK GMARHSQVAK IRSPGKRHKW bmy_20949T0/1-250 LANIERKKKL KIEKEKRGAV LTTTQYGKMK GMARHSQMAK IRSPGKRHKW BACU012177/1-342 LVNIERKKKL KIEKEKRGAV LTTTQYGKMK GMARHSQMAK IRSPGKRHKW 301 350 ENSP00000368459/1-495 KNDNSRQRAV TGSGSHLCDL KLEGPPEANA DPLGVLINSD SESDKEEKPQ ENSBTAP00000012392/1-492 KNGHAEQRTA AGSGHHLGDL KPESPLEANS DPLGVLVNTD SESDKEEKPQ ENSTTRP00000014138/1-494 KNGRAGQRAA MGSGNPLCGS KPESTPEANS DPLGVLVNTD SESDKEEKPQ bmy_20949T0/1-250 KNGHAGQRAA IGSGNPLCDS KPESTPEANS DPLGVLVNTD SESDKEEKPQ BACU012177/1-342 KNGRAEQRAA IGSGNPLCDS KPESTPEANS DPLGVLVNTD SESDKEEKPQ 351 400 ENSP00000368459/1-495 HSVIPKEVTP ALCSLMSSYG SLSGSESEPE ETPIKTEADV LAENQVLDSS ENSBTAP00000012392/1-492 SAVIPKEVTP ALCSLMSSYG GLSGSESEPE EAPIRTEADI LAEDQVLHSN ENSTTRP00000014138/1-494 NAVIPKEVTP ALCSLMSSYG SLSGSESEPE EVPIKTEADI LAEDQVLHSS bmy_20949T0/1-250 SAVIPKEVTP ALCSLMSSYG SLSGSDSEPE EAPIKTEADI LAEDQVLHSS BACU012177/1-342 SAVIPKEVTP ALCSLMSSYG SLSGSESEPE EAPIKTEADI LAEDQVLHSS 401 450 ENSP00000368459/1-495 APKSPSQDVK ATVRNFSEAK SENRKKSFEK TNPKRKKDYH NYQTLFEPRT ENSBTAP00000012392/1-492 TPKKPSQDVK ATVKNSSEAK CESQKRSFKN TNPKRKKNDL NYRTLFEPRT ENSTTRP00000014138/1-494 TPKKPSQDVK ATVRNFSEAK YESQKKSFKN TNPKRKKNYR NYQTLFEPRT bmy_20949T0/1-250 TPKKPSQDVK ATVRNFSEAK YESQKKSFKN TNPKRKKNYR NCQTLFEPRT BACU012177/1-342 TPKKPSQDVK ATVRNFSEAK YESQKKSFKN TNPKRKKNYR NCQTLFEPRT 451 500 ENSP00000368459/1-495 HHPYLLEMLL APDIRHERNV ILQCVRYIIK KDFFGLDTNS AKSKDV ENSBTAP00000012392/1-492 HHPYLLEMLL APDIRHERNV ILQCVRYIIK KDFFGLNTTT VNTKDE ENSTTRP00000014138/1-494 HHPYLLEMLL APDIRHERNV ILQCVRYIIK KDFFGLNTAS AKTKDE bmy_20949T0/1-250 HHPYLLEMLL APDIRRERNV ILQCVRYIIK KDFFGLNTTS AKTKDE BACU012177/1-342 HHPYLLEMLL APDIRRERNV ILQCVRYIIK KDFFGLNTTS AKTKDE