KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:51 2014 Check: 00 .. Name: ENSTTRP00000000050/1-608 Len: 703 Check: 4127 Weight: 1.00 Name: ENSP00000251900/1-700 Len: 703 Check: 7178 Weight: 1.00 Name: ENSBTAP00000012397/1-703 Len: 703 Check: 7876 Weight: 1.00 Name: bmy_18141T0/1-462 Len: 703 Check: 7369 Weight: 1.00 Name: BACU019732/1-611 Len: 703 Check: 916 Weight: 1.00 // 1 50 ENSTTRP00000000050/1-608 MGQTVNEESM DAKKENQEKA PQSGTSSVQD DDFNWENYLK ETGSLSAPSE ENSP00000251900/1-700 MGQTVNEDSM DVKKENQEKT PQSSTSSVQR DDFHWEEYLK ETGSISAPSE ENSBTAP00000012397/1-703 MGQTVEEDSM GVKKENQERA PQSGTSSVQN DHFQWEKYLE ETGSLSAPSE bmy_18141T0/1-462 ---------- ---------- ---------- ---------- ---------- BACU019732/1-611 ---------- ---------- ---------- --FHWENYLK ETGSLSAPSE 51 100 ENSTTRP00000000050/1-608 CFRQSQIPPA NDFKVGMKLE AHDPRNMISI CIATVVGITG ARLRLRLDGS ENSP00000251900/1-700 CFRQSQIPPV NDFKVGMKLE ARDPRNATSV CIATVIGITG ARLRLRLDGS ENSBTAP00000012397/1-703 YFRQSKIPPA NDFKVGMKLE AHDPRNTTSV CIATVVGVTG ARLRLRLDGS bmy_18141T0/1-462 ---------- ---------- ---------- ---------- ---------- BACU019732/1-611 CFRQSKIPPA NDFKVGMKLE ARDPRNMTSI CIATVVGITG ARLRLRLDGS 101 150 ENSTTRP00000000050/1-608 DNRNDFWRLV DSPDIQPVGT CEKEGDLLRP PLGYQMNTSS WPMFLLRTLS ENSP00000251900/1-700 DNRNDFWRLV DSPDIQPVGT CEKEGDLLQP PLGYQMNTSS WPMFLLKTLN ENSBTAP00000012397/1-703 DNQNDFWRLV DSPDIQPVGT CEKEGDLLQP PLGYQMNTSS WPMFLLRTLT bmy_18141T0/1-462 ---------- ---------- ---------- ---------- ---------- BACU019732/1-611 DNRNDFWRLV DSPDIQPVGT CEKEGDLLQP PLGYQMNTTS WPMFLLRILS 151 200 ENSTTRP00000000050/1-608 GSEMAPATFF KKEPPKPPLN NFKVGMKLEA IDRKNPYLIC PATIGNVKGD ENSP00000251900/1-700 GSEMASATLF KKEPPKPPLN NFKVGMKLEA IDKKNPYLIC PATIGDVKGD ENSBTAP00000012397/1-703 GSEMAPEAFF KKEPPKPPLN NFKVGMKLEA VDRKNPYLIC PATIGNVKGD bmy_18141T0/1-462 ---------- ---------- ---------- ---------- ---------- BACU019732/1-611 VSEMAPATFF KKEPPKPPVN TFKVGMKLEA IDKKNPYLIC PATIGNVKGD 201 250 ENSTTRP00000000050/1-608 EVYITFDGWS GAFDYWCKYD CRDIFPVGWC RLTGDVLQPP GTYVPVTKNI ENSP00000251900/1-700 EVHITFDGWS GAFDYWCKYD SRDIFPAGWC RLTGDVLQPP GTSVPIVKNI ENSBTAP00000012397/1-703 EVYITFDGWS GAFNYWCKYD CRDIFPVGWC NLTGDILQPL GSNVLITKNT bmy_18141T0/1-462 ---------- ---------- ---------- ---------- -MTVPITKNI BACU019732/1-611 EVYITFDGWS GTFDYWCKYY CRDIFPVGWC RLTGDVLQPP GTHVPITKNI 251 300 ENSTTRP00000000050/1-608 AKTQPSPSKA TQRSMQSLQK TAVILPTQQI RKSGRTKPPA HTSVPKKGSS ENSP00000251900/1-700 AKTESSPSEA SQHSMQSPQK TTLILPTQQV RRSSRIKPPG PTAVPKRSSS ENSBTAP00000012397/1-703 TKTQPPPSKA AQRSMQSPQN SAIILPTHQT KKSGRPKPPG CPSDPKKGSS bmy_18141T0/1-462 AKTQSSPSKA TQRSMQSPQK TAVILPTQQI RKSGRIKPPP PTSVPKKGSS BACU019732/1-611 AKTHS--SKA TQCSMKSPQK TAVILPTQQI RKSSRIKPPA PTSVPKKGST 301 350 ENSTTRP00000000050/1-608 VKNITPRKKG PNSGRKXXXX XXXXXXXXXX XXXXXXXX-- XXXXXXXXXX ENSP00000251900/1-700 VKNITPRKKG PNSGKKEKPL PVICSTSAAS LKSLTRDR-G MLY-KDVASG ENSBTAP00000012397/1-703 VKNTTTKKKG PHSGRKGKRI PVICSTSSTS ENALAREHGN ISYDKDVFPG bmy_18141T0/1-462 VKNITPKKKG PNSGRKEKCI PVVCSTSSAP LSMLTRERRG VSYDKDAVAG BACU019732/1-611 VKNITPKKKG PNSGRKEKCI PVVCSTSSAP LSTLTRERRG ASYDKDAVAG 351 400 ENSTTRP00000000050/1-608 XXXXXXXXXC VYVNKYGSSG PYLDQNKIQQ LPDHFGPGPV NVVLRRTVQA ENSP00000251900/1-700 PCKIVMSTVC VYVNKHGNFG PHLDPKRIQQ LPDHFGPGPV NVVLRRIVQA ENSBTAP00000012397/1-703 SSKIVMSTVC VYINKHGNCG PHLDQNKIQQ LPDHFGPGPV NVVLRQTVQA bmy_18141T0/1-462 SSKIVMSTVC VYVNKHGNCG PHLDQKKIQQ LPDHFGPGPV NVVLRRTVQA BACU019732/1-611 SSKIVMSTVC VYVNKHGNCG PHLDQTKIQQ LPDHFGPGPV NVVLRRTVQA 401 450 ENSTTRP00000000050/1-608 CVDCAIQSKT VFGFLKPDDR GGEVITXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000251900/1-700 CVDCALETKT VFGYLKPDNR GGEVITASFD GETHSIQLPP VNSASFALRF ENSBTAP00000012397/1-703 CVDCAIQSKT VFEFLKPDDR GGEVITAAFD GEIHSIQLPP VNSASFVLRF bmy_18141T0/1-462 CVDCAIQSKT VFGFLKPDHR GGEVITASFD GETHSIQLPP VNSASFALRF BACU019732/1-611 CVDCAIQSKT VFGFLKPDHR GGEVITASFD GETHSIQLPP VNSASFALRF 451 500 ENSTTRP00000000050/1-608 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000251900/1-700 LENFCHSLQC DNLLSSQPFS SSRGHTHSSA EHDKNQSAKE DVTERQSTKR ENSBTAP00000012397/1-703 LENLCHSLQC DNLLSSQPFS SYRGNTHSPE ENDQNKPVEE DIMEKKITKR bmy_18141T0/1-462 LETLCHSLQC DNLLSSQPFS SYRGNGHSPA EHDQNKSVKE DTTEKKSTKR BACU019732/1-611 LETLCHSLQC DNLLSSQPFS SYR------- ---------- ---------- 501 550 ENSTTRP00000000050/1-608 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXSEESKNSP ENSP00000251900/1-700 SPQQTVPYVV PLSPKLPKTK EYASEGEPLF AGGSAIPKEE NLSEDSKSSS ENSBTAP00000012397/1-703 PSEQPLPYVA PLSPKQPKII VHPSEEEVLP SEEDGMAKKE KLSEESKKSP bmy_18141T0/1-462 PSQQPLPYVA PLSPKLPKTK VHASEEEVLS SEGNGMAKGE MLSEESKNSP BACU019732/1-611 ---------- ---------- -----EEVLS SEGNGMPKGE MLSEESKNSP 551 600 ENSTTRP00000000050/1-608 LNPASSLNPA STNPISTHTP VSSSVSQSVP CTSSSTLVGT ESPPKSSHHE ENSP00000251900/1-700 LNSGNYLNPA CRNPMYIHTS VSQDFSRSVP GTTSSPLVGD ISP-KSSPHE ENSBTAP00000012397/1-703 LSSANSLSPA RKNPISTHTP VSMNGSQSMP CTSSLKVVET KSPIKSSQLE bmy_18141T0/1-462 LNPASSLNPA SKSPVSTHTP VSRSVSQSVP CTSSSTLVGT KSPPKSSHHE BACU019732/1-611 LNPASSLNPA SRSPVSTHTP VSGSVFQSVP CTSSSTLVGT KSSSESGHHE 601 650 ENSTTRP00000000050/1-608 VTFQMQRKSE ---------- ---------- ---------- ---------- ENSP00000251900/1-700 VKFQMQRKSE APSYIAVPDP SVLKQGFSKD PSTWSVDEVI QFMKHTDPQI ENSBTAP00000012397/1-703 VELEVQRESE APSYIAVPDP SVLKQGFSKD PETWSVDEVI QFMKHKDPQK bmy_18141T0/1-462 VTFQMQRKSE APSYIAVPDP SVLKQGFSKD PSTWSVDEVI QFMKHKDPQI BACU019732/1-611 VTFQKQRKSE VGS-----DR SVLRQSLLDD PSTWSVDEVI LFLKHIDPQT 651 700 ENSTTRP00000000050/1-608 ---------- ---------- ---------- ---------- ---------- ENSP00000251900/1-700 SGPLADLFRQ HEIDGKALFL LKSDVMMKYM GLKLGPALKL CYYIEKLKEG ENSBTAP00000012397/1-703 SGPLADLFRQ HEIDGKALLL LKSDVIMKYM GLKLGPALKL CYYIEKLKEG bmy_18141T0/1-462 SGPLADLFMQ HEIDGKALLL LKSDVMMKYM GLKLGPALKL CYYIEKLKEG BACU019732/1-611 SGTLTNLFRQ HEIDGKALLL LKSDVMMKYM GLKLGPALKL CYYIEKLKEG 701 750 ENSTTRP00000000050/1-608 --- ENSP00000251900/1-700 KYS ENSBTAP00000012397/1-703 KYN bmy_18141T0/1-462 KYN BACU019732/1-611 KY-