KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:46:54 2014 Check: 00 .. Name: ENSTTRP00000001317/1-356 Len: 480 Check: 897 Weight: 1.00 Name: ENSP00000338330/1-351 Len: 480 Check: 1042 Weight: 1.00 Name: bmy_03409T0/1-233 Len: 480 Check: 2755 Weight: 1.00 Name: ENSBTAP00000012414/1-344 Len: 480 Check: 7770 Weight: 1.00 // 1 50 ENSTTRP00000001317/1-356 TLFSLPLARL ARARDSTR-- -------GAR GLPTHRLRSA HQTLGVLGRW ENSP00000338330/1-351 ---------- ---------- ---------- ---------- ---------- bmy_03409T0/1-233 -MLSLKLPQL LRVHQVPRVF WEDGIMSGYR RPTSSALDCV LSSFQMTNET ENSBTAP00000012414/1-344 -MLSLKLPQL LRVHQVPRVF WEDGIMSGYR RPTSSALDCV LSSFQMTNET 51 100 ENSTTRP00000001317/1-356 YHVW--LPPP HQLGLGLCPQ LLPDDQRDRQ HLDSLPAHLV GGSVPGLGLE ENSP00000338330/1-351 ---------- ---------- ---------- ---------- ---------- bmy_03409T0/1-233 VNIWTHFLPT W--------- ---------- ---------- ---------- ENSBTAP00000012414/1-344 VNIWTHFLPT WYFLWRLLAL AAGLGFRSEP YHWPLLVFLL PACLYPFASC 101 150 ENSTTRP00000001317/1-356 LGGTADRDRP GPRAALGVAG GGGLSTCLPQ VLPAPPDAGG PGLPVGALLA ENSP00000338330/1-351 -------MSP RMRHICYFLD YGALS----- ---------- -------LYS bmy_03409T0/1-233 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012414/1-344 CAHTFSSMSP RVRHICYFLD YGALS----- ---------- -------LYS 151 200 ENSTTRP00000001317/1-356 ARPAARLXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000338330/1-351 LGCAFPYAAY SMPASWLHGH LHQFFVPAAA LNSFLCTGLS CYSRFLELES bmy_03409T0/1-233 ---------- ---------- ---------- ---------- ----FPELES ENSBTAP00000012414/1-344 LGCAFPYAAY SMPASWLHSR LHQLFVPAAA LNSFLCTGLS WYSRFPELES 201 250 ENSTTRP00000001317/1-356 XXXXXXXXXX XXXXXXXXXX XXXXXXLGLC WGRGHSCGQE ALSTSHGYHL ENSP00000338330/1-351 PGLSKVLRTG AFAYPFLFDN LPLFYRLGLC WGRGHGCGQE ALSTSHGYHL bmy_03409T0/1-233 PVLSKILRTA AFTYPFLFDN LPLFYRLGLC WGRGHSCGQE ELSTSHGYHL ENSBTAP00000012414/1-344 PGLSKILRSA AFIYPFLFDN LPLFYRLGLC WGRGRSCGQE ALSTSHGYHL 251 300 ENSTTRP00000001317/1-356 FCALLTGFLF ASHLPERLAP GRFDYIGHS- ---------- -----HQL-- ENSP00000338330/1-351 FCALLTGFLF ASHLPERLAP GRFDYIGEGT PGPAREEAGA DAFPEHRMNW bmy_03409T0/1-233 FCALLTGFLF ASHLPERLAP GRFDYIGHS- ---------- -----HQL-- ENSBTAP00000012414/1-344 FCALLTGFLF ASHLPERLAP GRFDYIGHS- ---------- -----HQL-- 301 350 ENSTTRP00000001317/1-356 ---------- --------FH ICAVLGTH-- ---------F QLEAVLA--- ENSP00000338330/1-351 ATATSYSTSV QCWAPTSSWR QCWLIWDHAE PGWPHRNLPW AWQAQWPHWS bmy_03409T0/1-233 ---------- --------FH ICAVMGTH-- ---------F QLEAVLA--- ENSBTAP00000012414/1-344 ---------- --------FH ICAVLGTH-- ---------F QLEAVLT--- 351 400 ENSTTRP00000001317/1-356 --DMGSRRAW LAMQEPPLG- ----LAGTVA T--------- ---------- ENSP00000338330/1-351 WLQLGTYSLL LLSQPPCFGP PVHALCCRVA HWRGVPRPNN SEAPSLTLSW bmy_03409T0/1-233 --DMGSRRAW LAMQEPPLG- ----LAGTVA T--------- ---------- ENSBTAP00000012414/1-344 --DMGSRRAW LATQEPPLG- ----LAGTVA T--------- ---------- 401 450 ENSTTRP00000001317/1-356 ---------- ----LGLAVA GNLLIIAAFT A--------- ----SLFQAP ENSP00000338330/1-351 RGQRPGPSAD EEPRFGPNQV GTHLSLEPTG AEERGHRREG REEEGCLGGL bmy_03409T0/1-233 ---------- ----LGLAVA GNLLIITAFT A--------- ----SLFRAP ENSBTAP00000012414/1-344 ---------- ----LGLAVA GNLLIIAAFT A--------- ----SLFRAP 451 500 ENSTTRP00000001317/1-356 STCPLLQGGP LER------N TKAKLQ---- ENSP00000338330/1-351 AECERDREGA LDGSGRSAEG LRGEMHACPG bmy_03409T0/1-233 SACPLLQGGP LEG------N TKAKLQ---- ENSBTAP00000012414/1-344 STCTLLQGGS LER------G TKAKLQ----