KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:55 2014 Check: 00 .. Name: ENSTTRP00000001319/1-1014 Len: 1366 Check: 2366 Weight: 1.00 Name: ENSP00000355261/1-1016 Len: 1366 Check: 9527 Weight: 1.00 Name: ENSBTAP00000012415/1-1016 Len: 1366 Check: 9504 Weight: 1.00 Name: bmy_03410T0/1-984 Len: 1366 Check: 136 Weight: 1.00 Name: BACU003943/1-1286 Len: 1366 Check: 5756 Weight: 1.00 // 1 50 ENSTTRP00000001319/1-1014 MSQGPPTGES S-----EPEA KVLHTKRL-- ---------- ---------- ENSP00000355261/1-1016 MSQGPPTGES S-----EPEA KVLHTKRL-- ---------- ---------- ENSBTAP00000012415/1-1016 MSQGPPTGES S-----EPEA KVLHTKRL-- ---------- ---------- bmy_03410T0/1-984 MAAEQ--GRR RWRLRLRPES AVVAVALFLC DQCSSIIGGP YTWLRGSLPM BACU003943/1-1286 MSQGPPTGES S-----EPEA KVLHTKRL-- ---------- ---------- 51 100 ENSTTRP00000001319/1-1014 --YRXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXLRE LCVKLMFLHP ENSP00000355261/1-1016 --YRAVVEAV HRLDLILCNK TAYQEVFKPE NISLRNKLRE LCVKLMFLHP ENSBTAP00000012415/1-1016 --YRAVVEAV HRLDLILCNK TAYQEVFKPE NISLRNKLRE LCVKLMFLHP bmy_03410T0/1-984 FPCRAVVEAV HRLDLILCNK TAYQEVFKPE NISLRNKLRE LCVKLMFLHP BACU003943/1-1286 --YRAVVEAV HRLDLILCNK TAYQEVFKPE NISLRNKLRE LCVKLMFLHP 101 150 ENSTTRP00000001319/1-1014 MDYGRKAEEL LWRKVYYEVI QLIKTNKKHI HSRSTLECAY RTHLVAGIGF ENSP00000355261/1-1016 VDYGRKAEEL LWRKVYYEVI QLIKTNKKHI HSRSTLECAY RTHLVAGIGF ENSBTAP00000012415/1-1016 VDYGRKAEEL LWRKVYYEVI QLIKTNKKHI HSRSTLECAY RTHLVAGIGF bmy_03410T0/1-984 VDYGRKAEEL LWRKVYYEVI QLIKTNKKHI HSRSTLECAY RTHLVAGIGF BACU003943/1-1286 VDYGRKAEEL LWRKVYYEVI QLIKTNKKHI HSRSTLECAY RTHLVAGIGF 151 200 ENSTTRP00000001319/1-1014 YQHLLLYIQS HYQLELQCCI DWTHVTDPLI GCKKPVSASG KEMDWAQMAC ENSP00000355261/1-1016 YQHLLLYIQS HYQLELQCCI DWTHVTDPLI GCKKPVSASG KEMDWAQMAC ENSBTAP00000012415/1-1016 YQHLLLYIQS HYQLELQCCI DWTHVTDPLI GCKKPVSASG KEMDWAQMAC bmy_03410T0/1-984 YQHLLLYIQS HYQLELQCCI DWTHVTDPLI GCKKPVSASG KEMDWAQMAC BACU003943/1-1286 YQHLLLYIQS HYQLELQCCI DWTHVTDPLI ---------- ---------- 201 250 ENSTTRP00000001319/1-1014 HRCLVYLGDL ---------- ---------- -SRYQNELAG VDTELLAERF ENSP00000355261/1-1016 HRCLVYLGDL ---------- ---------- -SRYQNELAG VDTELLAERF ENSBTAP00000012415/1-1016 HRCLVYLGDL ---------- ---------- -SRYQNELAG VDTELLAERF bmy_03410T0/1-984 HRCLVYLGDL CKNPNLSFFS VLGYETGSDC SSRYQNELAG VDTELLAERF BACU003943/1-1286 ---------- ---------- ---------- -ARYQNELAG VDTELLAERF 251 300 ENSTTRP00000001319/1-1014 YYQALSVAPQ IGMPFNQLGT LAGSKYYNVE AMYCYLRCIQ SEVSFEGAYG ENSP00000355261/1-1016 YYQALSVAPQ IGMPFNQLGT LAGSKYYNVE AMYCYLRCIQ SEVSFEGAYG ENSBTAP00000012415/1-1016 YYQALSVAPQ IGMPFNQLGT LAGSKYYNVE AMYCYLRCIQ SEVSFEGAYG bmy_03410T0/1-984 YYQALSVAPQ IGMPFNQLGT LAGSKYYNVE AMYCYLRCIQ SEVSFEGAYG BACU003943/1-1286 YYQALSVAPQ IGMPFNQLGT LAGSKYYNVE AMYCYLRCIQ SEVSFEGAYG 301 350 ENSTTRP00000001319/1-1014 NLKRLYDKAA KMYHQLKKCE TRKLSPSKKR CKDIKRLLVN FMYLQSLLQP ENSP00000355261/1-1016 NLKRLYDKAA KMYHQLKKCE TRKLSPGKKR CKDIKRLLVN FMYLQSLLQP ENSBTAP00000012415/1-1016 NLKRLYDKAA KMYHQLKKCE TRKLSPSKKR CKDIKRLLVN FMYLQSLLQP bmy_03410T0/1-984 NLKRLYDKAA KMYHQLKKCE TRKLSPIKKR CKDIKRLLVN FMYLQSLLQP BACU003943/1-1286 NLKRLYDKAA KMYHQLKKCE TRKLSPSKKR CKDIKRLLVN FMYLQSLLQP 351 400 ENSTTRP00000001319/1-1014 KSSSVDSELT SLCQSVLEDF NLCLFYLPSS PNLSLASEDE EEYESGYAFL ENSP00000355261/1-1016 KSSSVDSELT SLCQSVLEDF NLCLFYLPSS PNLSLASEDE EEYESGYAFL ENSBTAP00000012415/1-1016 KSSSVDSELT SLCQSVLEDF NLCLFYLPSS PNLSLASEDE EEYESGYAFL bmy_03410T0/1-984 KSSSVDSELT SLCQSVLEDF NLCLFYLPSS PNLSLASEDE EEYESGYAFL BACU003943/1-1286 KSSSVDSELT SLCQSVLEDF NLCLFYLPSS PNLSLASEDE EEYESGYAFL 401 450 ENSTTRP00000001319/1-1014 PDLLIFQMVI ICLMGVHSLK RAGSKQYSAA IAFTLALFSH LVNHVNIRLQ ENSP00000355261/1-1016 PDLLIFQMVI ICLMCVHSLE RAGSKQYSAA IAFTLALFSH LVNHVNIRLQ ENSBTAP00000012415/1-1016 PDLLIFQMVI ICLMGVHSLK RAGSKQYSAA IAFTLALFSH LVNHVNIRLQ bmy_03410T0/1-984 PDLLIFQMVI ICLMGVHSLK RAGSKQYSAA IAFTLALFSH LVNHVNIRLQ BACU003943/1-1286 PDLLIFQMVI ICLMGVHSLK RAGSKQYSAA IAFTLALFSH LVNHVNIRLQ 451 500 ENSTTRP00000001319/1-1014 AELEEGENPV PAFQSDGTDE AESKEPLEKV EEPGPEPPPA ASQDGEVRKS ENSP00000355261/1-1016 AELEEGENPV PAFQSDGTDE PESKEPVEKE EEPDPEPPPV TPQVGEGRKS ENSBTAP00000012415/1-1016 AELEEGENPV PAFQSDGTDE PESREPLEKE EEPGPEPPPV VPPEGEVRKS bmy_03410T0/1-984 AELEEGENPV PAFQSDGTDE PESKEPLEKE EEPGPEPPPA ASQDGEVRKS BACU003943/1-1286 AELEEGENPV PAFQSDGTDE PESKEPLEKE EEPGPEPPPA ASQDGEVRKS 501 550 ENSTTRP00000001319/1-1014 RKFSRLSCLR RRRHPPKAGD DSDLSEGFDS DSSHDSARAS EGSDSGSDKS ENSP00000355261/1-1016 RKFSRLSCLR RRRHPPKVGD DSDLSEGFES DSSHDSARAS EGSDSGSDKS ENSBTAP00000012415/1-1016 RKFSRLSCLR RRRHPPKAGD DSDLSEGFDS DSSHDSARAS EGSDSGSDKS bmy_03410T0/1-984 RKFSRLSCLR RRRHPPKAGD DSDLSEGFDS DSSHDSARAS EGSDSGSDKS BACU003943/1-1286 RKFSRLSCLR RRRHPPKAGD DSDLSEGFDS DSSHDSARAS EGSDSGSDKS 551 600 ENSTTRP00000001319/1-1014 LEGGGTAFDA ETDSEMNSQE SRSDLEDMED EEGTRSPALE PPRARSEAPE ENSP00000355261/1-1016 LEGGGTAFDA ETDSEMNSQE SRSDLEDMEE EEGTRSPTLE PPRGRSEAPD ENSBTAP00000012415/1-1016 LEGGGTAFDA ETDSEMNSQE SRSDLEDMED EDGTRSPALE PSRARSEAPE bmy_03410T0/1-984 LEGGGTAFDA ETDSEMNSQE SRSDLEDMED EEGTRSPALE PPRARSEAPE BACU003943/1-1286 LEGGGTAFDA ETDSEMKSQE SRSDLEDMED EEGTRSPALE PPRAGSEAPE 601 650 ENSTTRP00000001319/1-1014 SLNGPLGPSE ASIASNLQAM STQMFQTKRC FRLAPTFSNL LLQPTTEAPT ENSP00000355261/1-1016 SLNGPLGPSE ASIASNLQAM STQMFQTKRC FRLAPTFSNL LLQPTTNPHT ENSBTAP00000012415/1-1016 SLNGPLGPSE ASIASNLQAM STQMFQTKRC FRLAPTFSNL LLQPTTEAPV bmy_03410T0/1-984 SLNGPLGTSE ASIASNLQAM STQMFQTKRC FRLAPTFSNL LLQPTTEAPT BACU003943/1-1286 SLNGPLGTSE ASIASNLQAM STQMFQTKRC FRLAPTFSNL LLQPTTEAPT 651 700 ENSTTRP00000001319/1-1014 LASRRPCVNG DVDKPSEPAS EEGSESEGSE SSGRSCRNER SIQEKLQVLM ENSP00000355261/1-1016 SASHRPCVNG DVDKPSEPAS EEGSESEGSE SSGRSCRNER SIQEKLQVLM ENSBTAP00000012415/1-1016 SATLRRCVNG DVDKPSEPAS EEGSESEGSE SSGRSFRNER SIQEKLQVLM bmy_03410T0/1-984 LASRRPCVNG DVDKPSEPAS EEGSESEGSE SSGRSCRNER SIQEKLQVLM BACU003943/1-1286 LASRRPCVNG DVDKPSEPAS EEGSESEGSE SSGRSCRNER SIQEKLQVLM 701 750 ENSTTRP00000001319/1-1014 AEGLLPAVKV FLDWLRTNPD LIIVCAQSSQ SLWNRLSVLL NLLPAAGELQ ENSP00000355261/1-1016 AEGLLPAVKV FLDWLRTNPD LIIVCAQSSQ SLWNRLSVLL NLLPAAGELQ ENSBTAP00000012415/1-1016 AEGLLPAVKV FLDWLRTNPD LIVVCAQSSQ SLWNRLSVLL NLLPAAGELQ bmy_03410T0/1-984 AEGLLPAVKV FLDWLRTNPD LIIVCAQSSQ SLWNRLSVLL NLLPAAGELQ BACU003943/1-1286 AEGLLPAVKV FLDWLRTNPD LIIVCAQSSQ SLWNRLSVLL NLLPAAGELQ 751 800 ENSTTRP00000001319/1-1014 ESGLVLCPEV QDLLEGCELP DLPSSLLLPE DMALRNLPPL RAAHRRFNFD ENSP00000355261/1-1016 ESGLALCPEV QDLLEGCELP DLPSSLLLPE DMALRNLPPL RAAHRRFNFD ENSBTAP00000012415/1-1016 ESGLALCAEV QELLEGCELP DLPSSLLLPE DTALRNLPPL RAAHRRFSFD bmy_03410T0/1-984 ESGLVLCPEV QDLLEGCELP DLPSSLLLPE DMALRNLPPL RAAHRRFNFE BACU003943/1-1286 ESGLVLCPEV QDLLEGCELP DLPSSLLLPE DMALRNLPPL RAAHRRFNFE 801 850 ENSTTRP00000001319/1-1014 TDRLLLSTSE ETVVRICCIR SFGHFVARLQ GSILQFNPEV GIFVSIAQSE ENSP00000355261/1-1016 TDRPLLSTLE ESVVRICCIR SFGHFIARLQ GSILQFNPEV GIFVSIAQSE ENSBTAP00000012415/1-1016 TARLLLSTLE ETVVRICCIR SFGHFVARLQ GSILQFNAEV GIFVSIAQSE bmy_03410T0/1-984 TDRLLLSTSE ETVVRICCIR SFGHFVARLQ GSILQFNPEV GIFVSITQSE BACU003943/1-1286 TDRLLLSTSE ETVVRICCIR SFGHFVARLQ GSILQFNPEV GIFVSITQSE 851 900 ENSTTRP00000001319/1-1014 QESLLQQAQA QFRMAQEEAR RNRLMRDMAQ LRLQLEVSQL E-SLQQPKAQ ENSP00000355261/1-1016 QESLLQQAQA QFRMAQEEAR RNRLMRDMAQ LRLQLEVSQL EGSLQQPKAQ ENSBTAP00000012415/1-1016 QESLLQQAQA QFRMAQEEAR RNRLMRDMAQ LRLQLEVSQL EGSLQQPKAQ bmy_03410T0/1-984 QESLLQQAQA QFRMAQEEAR RNRLMRDMAQ LRLQ------ ---------- BACU003943/1-1286 QESLLQQAQA QFRMAQEEAR RNRLMRDMAQ LRLQLEVSQL EGSLQQPKAQ 901 950 ENSTTRP00000001319/1-1014 SAMSPYLVPD TQA-CHHLPV XXXXXXXXXX XXXXXXXXID GLDLLKKEHP ENSP00000355261/1-1016 SAMSPYLVPD TQALCHHLPV IRQLATSGRF IVIIPRTVID GLDLLKKEHP ENSBTAP00000012415/1-1016 SAMSPYLVPD TQALCHHLPV IRQLATSGRF IVIIPRTVID GLDLLKKEHP bmy_03410T0/1-984 ---------- ---------- ---------- ------CVLE ---------- BACU003943/1-1286 SAMSPYLVPD TQALCHHLPV IRQLATSGRF IVIIPRTVID GLDLLKKEHP 951 1000 ENSTTRP00000001319/1-1014 GARDGIRYLE AEFKKGNRYI RCQKEVGKSF ERHKLKRQDA DAWTLYKILD ENSP00000355261/1-1016 GARDGIRYLE AEFKKGNRYI RCQKEVGKSF ERHKLKRQDA DAWTLYKILD ENSBTAP00000012415/1-1016 GARDGIRYLE AEFKKGNRYI RCQREAGKSF ERHKLKRQDA DAWTLYKILD bmy_03410T0/1-984 ---------- --------YI RCQKEVGKSF ERHKLKRQDA DAWTLYKILD BACU003943/1-1286 GARDGIRYLE AEFKKGNRYI RCQKEVGKSF ERHKLKRQDA DAWTLYKILD 1001 1050 ENSTTRP00000001319/1-1014 SCKQLTLAQG AGEEDPSGMV TIITGLPLDN PSTLSGPMQ- ---------- ENSP00000355261/1-1016 SCKQLTLAQG AGEEDPSGMV TIITGLPLDN PSVLSGPMQ- ---------- ENSBTAP00000012415/1-1016 SCKQLTLAQG AGEEDPSGMV TIITGLPLDN PSTLSGPMQ- ---------- bmy_03410T0/1-984 SCKQLTLAQG AGEEDPSGMV TIITGLPLDN PSTLSGPMQ- ---------- BACU003943/1-1286 SCKQLTLAQG AGEEDPSGMV TIITGLPLDN PSTLSGPMQV FWEDGIMSGY 1051 1100 ENSTTRP00000001319/1-1014 -----AALQA A------AHA SVDI------ ---------- ---------- ENSP00000355261/1-1016 -----AALQA A------AHA SVDI------ ---------- ---------- ENSBTAP00000012415/1-1016 -----AALQA A------AHA SVDI------ ---------- ---------- bmy_03410T0/1-984 -----AALQA A------AHA SVDI------ ---------- ---------- BACU003943/1-1286 RRPTSSALDC VLSSFQMTNE TVNIWTHFLP TWYFLWRLLA LAGGQGFRSE 1101 1150 ENSTTRP00000001319/1-1014 ---------- ---------- ---------- ---------- ---------- ENSP00000355261/1-1016 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012415/1-1016 ---------- ---------- ---------- ---------- ---------- bmy_03410T0/1-984 ---------- ---------- ---------- ---------- ---------- BACU003943/1-1286 PYHWPLLVFL LPACLYPFAS CCAHTFSSMS PRARHICYFL DYGALSLYSL 1151 1200 ENSTTRP00000001319/1-1014 ---------- ---------- ---------- ---------- ---------- ENSP00000355261/1-1016 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012415/1-1016 ---------- ---------- ---------- ---------- ---------- bmy_03410T0/1-984 ---------- ---------- ---------- ---------- ---------- BACU003943/1-1286 GCAFPYAAYS IPASWLHSRL HQLFVPAAAL NSFLCTGLSC YSRFPELESP 1201 1250 ENSTTRP00000001319/1-1014 ---------- -------KNV LDFYK----- ---------- ---------- ENSP00000355261/1-1016 ---------- -------KNV LDFYK----- ---------- ---------- ENSBTAP00000012415/1-1016 ---------- -------KNV LDFYK----- ---------- ---------- bmy_03410T0/1-984 ---------- -------KNV LDFYK----- ---------- ---------- BACU003943/1-1286 ALSKILRTAA FTYPFLFDNL PLFYRLGLCW GRGHSCGQEA LSTSHGYHLF 1251 1300 ENSTTRP00000001319/1-1014 ---------- ---------- QWKEIG---- ---------- ---------- ENSP00000355261/1-1016 ---------- ---------- QWKEIG---- ---------- ---------- ENSBTAP00000012415/1-1016 ---------- ---------- QWKEIG---- ---------- ---------- bmy_03410T0/1-984 ---------- ---------- QWKEIG---- ---------- ---------- BACU003943/1-1286 CALLTGFLFA SHLPERLAPG RFDYIGHSHQ LFHICAVMGT HFQLEAVLAD 1301 1350 ENSTTRP00000001319/1-1014 ---------- ---------- ---------- ---------- ---------- ENSP00000355261/1-1016 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012415/1-1016 ---------- ---------- ---------- ---------- ---------- bmy_03410T0/1-984 ---------- ---------- ---------- ---------- ---------- BACU003943/1-1286 MGSRRAWLAM QEPPLGLAGT VATLGLAVAG NLLIIAAFTA SLFRAPSACP 1351 1400 ENSTTRP00000001319/1-1014 ---------- ------ ENSP00000355261/1-1016 ---------- ------ ENSBTAP00000012415/1-1016 ---------- ------ bmy_03410T0/1-984 ---------- ------ BACU003943/1-1286 LLQGGPLEGN AKAKLQ