KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:01 2014 Check: 00 .. Name: ENSP00000219473/1-798 Len: 837 Check: 7374 Weight: 1.00 Name: ENSTTRP00000011380/1-795 Len: 837 Check: 7996 Weight: 1.00 Name: ENSBTAP00000012432/1-800 Len: 837 Check: 6480 Weight: 1.00 Name: bmy_21663T0/1-821 Len: 837 Check: 4647 Weight: 1.00 Name: BACU004334/1-609 Len: 837 Check: 2499 Weight: 1.00 // 1 50 ENSP00000219473/1-798 ---------- ---------- -------MAL HSPQYIFGDF SPDEFNQFFV ENSTTRP00000011380/1-795 ---------- ---------- ---------- ----YIFGDF SPDEFNQFFV ENSBTAP00000012432/1-800 ---------- ---------- -------MAL RSPQYIFGDF SPDEFNQFFV bmy_21663T0/1-821 MGQVPEWRKD SMALPGGGHS TQTVVWLESG RCSKYIFGDF SPDEFNQFFV BACU004334/1-609 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000219473/1-798 TPRSSVELPP YSGTVLCGTQ AVDKLPDGQE YQRIEFGVDE VIEPSDTLPR ENSTTRP00000011380/1-795 TPRSSVELPP YGGAVLCGAQ AAGELSDGQD CQRIEFGVNE VIEPNDTLLR ENSBTAP00000012432/1-800 TPRASVELPP YGGTVLCGAQ AADDLPDGHD YQRIEFGVNE VIEPSDTLPR bmy_21663T0/1-821 TPRSSVELPP YGGAVLCGAQ AAGELPDGQD CQRIEFGVNE VIEPNDTLLR BACU004334/1-609 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000219473/1-798 TPSYSISSTL NPQAPEFILG CTASKITPDG ITKEASYGSI DCQYPGSALA ENSTTRP00000011380/1-795 TPNYSISSTL NPQAPEFILS CTASKKIPND IDKEVNYSSA DCQYPGSALA ENSBTAP00000012432/1-800 TPNYSISSTL NPQAPEFILS CTTSKKLPDD IDKEVNYSSA NCQYPGPALA bmy_21663T0/1-821 TPNYSISSTL NPQAPEFILS CTTSKKIPND IDKEVNYSPA DCQYPGSALA BACU004334/1-609 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000219473/1-798 LDGSSNVEAE VLENDGVSGG LGQRERKKKK KRPPGYYSYL KDGGDDSIST ENSTTRP00000011380/1-795 LDGSSNVEAE VLENDGVSGA LGQRERKKKK KRPPGYYSYL KDGGEGGPST ENSBTAP00000012432/1-800 LDGGSPAEAE ALENDGVSGG LGQRERKKKK KRPPGYYSYL KDGGEGGPSA bmy_21663T0/1-821 LDGSSNAEAE GLENDGVSGG LGQRERKKKK KRPPGYYSYL KDGGEGGPST BACU004334/1-609 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000219473/1-798 EALVNGHANS AVPNSVSAED AEFMGDMPPS VTPRTCNSPQ NSTDSVSDIV ENSTTRP00000011380/1-795 EALVNGHAGP AVPSSVGTED VDSMGDVPPV GTPRTWGSPQ DTTDFVSDAM ENSBTAP00000012432/1-800 EALVNGHAGP AVSNSVGAED TDLMGDVPTA GTPRTWGSPQ DATDFVSDAG bmy_21663T0/1-821 EALVNGHAGP AVPNSVGTED VDSMGDVPPV GTPRTWGSPQ DTTDFVSDAV BACU004334/1-609 ---------- ---------- ---MGDVPPV GTPRTWGSPQ DTTDFVSDAV 251 300 ENSP00000219473/1-798 PDSPFPGALG SDTRTAGQPE GGPGADFGQS CFPAEAGRDT LSRTAGAQPC ENSTTRP00000011380/1-795 PAGSFPGALD SGARTAGQPE GCPGANLEPS RLPAEASRDT LLRTAVAQPA ENSBTAP00000012432/1-800 PAGAFPGALD GGARTAGQLE GCPGADSEAS CLPAEAGRDT LLRTAVAQPS bmy_21663T0/1-821 PAGSFPGALD SGARTAGQPE GCPGANLEPS RLPAEASRDT LLRTAVAQPA BACU004334/1-609 PAGSSPGALD GGARTAGQPE GCPGATVEPP RLPAEASRDT LLRTAVAQPA 301 350 ENSP00000219473/1-798 VGTDTTENLG VANGQILESS GEGTATNGVE LHTTESIDLD PTKPESASPP ENSTTRP00000011380/1-795 VGTDTTENLG VTNGQILESL GEGTAANGVE LHTVESSDSE PARAESGAPP ENSBTAP00000012432/1-800 VGTDTTENLG VTNGQILESL GEGTAANGVE LHTVESSDSD PAKAESAPPP bmy_21663T0/1-821 VGTDTTENLG VTNGQILESL VEGTAANGVE LHTVESSDSD PAKAESGPPP BACU004334/1-609 VGSDTTENLG VANGQILESL VAGTAANGVE LHTVESSDSD PAMAESGPPP 351 400 ENSP00000219473/1-798 ADGTGSASGT LPV--SQP-K SWASLFHDSK P----SSSSP ----VAYVET ENSTTRP00000011380/1-795 ADAAASAAGT LPV--SQPTK SWASLFHGSK PP---SSSPP PRLCXXXXGA ENSBTAP00000012432/1-800 ADAPASAAGT VPA--SQPAK SWASLFHDSK PS---SSSLP ----VVSVET bmy_21663T0/1-821 ADAPASAAAT APAGQSQPAK SWASLFHDSK PSSSCSSSSP ----VVSMET BACU004334/1-609 ADAPASAAAA APAGQSQPAK SWASLFHDSK PSSSCSSSLP ----VVSMEA 401 450 ENSP00000219473/1-798 KYSPPAISPL VSEKQVEVKE GLVPVSEDPV AIKIAELLEN VTLIHKPVSL ENSTTRP00000011380/1-795 KYSPPATSSL VSEKQAEVKE GLVPVSEDPV AIKIAELLEN VTLIHKPVSL ENSBTAP00000012432/1-800 KYSPPATSPL VSEKQAEVKE GLVPVSEDPV AIKIAELLEN VTLIHKPVSL bmy_21663T0/1-821 KYSPPASSSL VSEKQAEAKE GLVPVSEDPV AIKIAELLEN VTLIHKPVSL BACU004334/1-609 KYSPPATSSL VSEKQAEVKE GLVPVSEDPV AIKIAELLEN VTLIHKPVSL 451 500 ENSP00000219473/1-798 QPRGLINKGN WCYINATLQA LVACPPMYHL MKFIPLYSKV QRPCTSTPMI ENSTTRP00000011380/1-795 QPRGLINKGN WCYINATLQA LVACPPMYHL MKFIPLYSKV QRPCTSTPMI ENSBTAP00000012432/1-800 QPRGLINKGN WCYINATLQA LVACPPMYHL MKLIPLYSKV QRPCTSTPMI bmy_21663T0/1-821 QPRGLINKGN WCYINATLQA LVACPPMYHL MKFIPLYSKV QRPCTSTPMI BACU004334/1-609 QPRGLINKGN WCYINATLQA LVACPPMYHL MKFIPLYSKV QRPCTSTPMI 501 550 ENSP00000219473/1-798 DSFVRLMNEF TNMPVPPKPR QALGDKIVRD IRPGAAFEPT YIYRLLTVNK ENSTTRP00000011380/1-795 DSFVRLMNEF TNMPVPPKPR QAPGDKAVRD VRPGAAFEPT YIYRLLTVIK ENSBTAP00000012432/1-800 DSFVRLMNEF TNMPVPPKPR QALGDKIVRD IRPGAAFEPT YIYRLLTVIK bmy_21663T0/1-821 DSFVRLMNEF TNMPVPPKPR QALGDKIVRD IRPGAAFEPT YIYRLLTVIK BACU004334/1-609 DSFVRLMNEF TNMPVPPKPR QALGDKIVRD IRPGAAFEPT YIYRLLTVIK 551 600 ENSP00000219473/1-798 SSLSEKGRQE DAEEYLGFIL NGLHEEMLNL KKLLSPSNEK LTISNGPKNH ENSTTRP00000011380/1-795 SSLSEKGRQE DAEEYLGFIL NGLHEEMLNL KKLLSPNNEK LTVSNGPRSH ENSBTAP00000012432/1-800 SSLSEKGRQE DAEEYLGFIL NGLHEEMLNL KKLLSPNNDK LTISNGPKSH bmy_21663T0/1-821 SSLSEKGRQE DAEEYLGFIL NGLHEEMLNL KKLLSPNNEK LTVSNGPRSH BACU004334/1-609 SSLSEKGRQE DAEEYLGFIL NGLHEEMLNL KKLLSPNNEK LTVSNGPRSH 601 650 ENSP00000219473/1-798 SVNEEEQEEQ GEGSEDEW-E QVGPRNKTSV TRQADFVQTP ITGIFGGHIR ENSTTRP00000011380/1-795 SVDE---EEP GEGSEDEWGA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000012432/1-800 SVNEDEQEEP GEGSEDEW-E QVGPRNKTSV TRQADFVQTP ITGIFGGHIR bmy_21663T0/1-821 SVNEDEQEEP GEGSEDEW-E QVGPRNKTSV TRQADFVQTP ITGIFGGHIR BACU004334/1-609 SVNEDEQEEP GEGSEDEW-E QVGPRNKTSV TRQADFVQTP ITGIFGGHIR 651 700 ENSP00000219473/1-798 SVVYQQSSKE SATLQPFFTL QLDIQSDKIR TVQDALESLV ARESVQGYTT ENSTTRP00000011380/1-795 SVVYQQSSKE SATLQPFFTL QLDIQSDKVR TVQDALESLV ARESVQGYTT ENSBTAP00000012432/1-800 SVVYQQSSKE SATLQPFFTL QLDIQSDKIR TVQDALESLV ARESVQGYTT bmy_21663T0/1-821 SVVYQQSSKE SATLQPFFTL QLDIQSDKIR TVQDALESLV ARES------ BACU004334/1-609 SVVYQQSSKE SATLQPFFTL QLDIQSDKIR TVQDALESLV ARESVQGYTT 701 750 ENSP00000219473/1-798 KTKQEVEISR RVTLEKLPPV LVLHLKRFVY EKTGGCQKLI KNIEYPVDLE ENSTTRP00000011380/1-795 KTKQEXXXXX XXMTLELPPV LVLHLKRFVY EKTGGCQKLI KNIEYPVDLE ENSBTAP00000012432/1-800 KTRQEVEISR RVTLEKLPPV LVLHLKRFVY EKTGGCQKLI KNIEYPVDLE bmy_21663T0/1-821 -----VEISR RVTLEKLPPV LVLHLKRFVY EKTGGCQKLI KNIEYPVDLE BACU004334/1-609 KTKQEVEISR RVTLEKLPPV LVLHLKRFVY EKTGGCQKLI KNIDYPVDLE 751 800 ENSP00000219473/1-798 ISKELLSPGV KNKNFKCHRT YRLFAVVYHH GNSATGGHYT TDVFQIGLNG ENSTTRP00000011380/1-795 ISKELLSPGV KNKNFKCHRT YRLFAVVYHH GSSATGGHYT TDVFQIGLNG ENSBTAP00000012432/1-800 ISKELLSPGV KNKNFKCHRT YRLFAVVYHH GSSATGGHYT TDVFQIGLNG bmy_21663T0/1-821 ISKELLSPGV KNKNFKCHRT YRLFAVVYHH GSSATGGHYT TDVFQIGLNG BACU004334/1-609 ISKELLSPGV KNKNFKCHRT YRLFAVVYHH GSSATGGHYT TDVFQIGLNG 801 850 ENSP00000219473/1-798 WLRIDDQTVK VINQYQVVKP TAERTAYLLY YRRVDLL ENSTTRP00000011380/1-795 WLRIDDQTVK VINQYQVVKP AAERTAYLLY YRRVDLL ENSBTAP00000012432/1-800 WLRIDDQTVK VVSQQQVVRP AAERTAYLLY YRRVDLL bmy_21663T0/1-821 WLRIDDQTVK VINQYQVVKP AAERTAYLLY YRRVDLL BACU004334/1-609 WLRIDDQTVK VINQYQVVKP AAERTAYLLY YRRVDLL