KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:05 2014 Check: 00 .. Name: BACU005362/1-667 Len: 781 Check: 9742 Weight: 1.00 Name: ENSP00000294168/1-622 Len: 781 Check: 3809 Weight: 1.00 Name: ENSBTAP00000012482/1-665 Len: 781 Check: 2537 Weight: 1.00 Name: bmy_19271T0/1-658 Len: 781 Check: 4139 Weight: 1.00 Name: ENSTTRP00000002323/1-594 Len: 781 Check: 9766 Weight: 1.00 // 1 50 BACU005362/1-667 ---------- ---------- ---------- ---------- ------MSER ENSP00000294168/1-622 ---------- ---------- ---------- ---------- ------MSER ENSBTAP00000012482/1-665 MRFLVQGFWN KSNKIGLEGL QSGSRAQRET GLPFPTSFPT PSSIGAMSER bmy_19271T0/1-658 ---------- ---------- ---------- ---------- ------MSER ENSTTRP00000002323/1-594 ---------- ---------- ---------- ---------- ------MSER 51 100 BACU005362/1-667 EERRFVEIPR ESVRLMAEST GLELSDEVAA LLAEDVCYRL REATQNSSQF ENSP00000294168/1-622 EERRFVEIPR ESVRLMAEST GLELSDEVAA LLAEDVCYRL REATQNSSQF ENSBTAP00000012482/1-665 EERRFVEIPR ESVRLMAEST GLELSDEVAA LLAEDVCYRL REATQNSSQF bmy_19271T0/1-658 EERRFVEIPR ESVRLMAEST GLELSDEVAA LLAEDVCYRL REATQNSSQF ENSTTRP00000002323/1-594 EERRFVEIPR ESVRLMAEST GLELSDEVTA LLAEDVCYRL REATQNSSQF 101 150 BACU005362/1-667 MKHTKRRKLT VEDFNRALRW SSVE------ ---------- ---------- ENSP00000294168/1-622 MKHTKRRKLT VEDFNRALRW SSVE------ ---------- ---------- ENSBTAP00000012482/1-665 MKHTKRRKLT VEDFNRALRW SSVE------ ---------- ---------- bmy_19271T0/1-658 MKHTKRRKLT VEDFNRALRW SSVEVSGVPA AEGSVGTSPP ARPAQGWQCS ENSTTRP00000002323/1-594 MKHTKRRKLT VEDFNRALRW SSVE------ ---------- ---------- 151 200 BACU005362/1-667 ---------- ---------- ---------- ---AVCGYGS QEALPLRPAR ENSP00000294168/1-622 ---------- ---------- ---------- ---AVCGYGS QEALPMRPAR ENSBTAP00000012482/1-665 ---------- ---------- ---------- ---AVCGYGS QEVLPLRPAR bmy_19271T0/1-658 EMTSGLPANI GSVPWSVEHL FPPWIRPNRL FTQAVCGYGS QEALPLRPAR ENSTTRP00000002323/1-594 ---------- ---------- ---------- ---AVCGYGS QEALPLRPAR 201 250 BACU005362/1-667 EGELYFPEDR EVNLVELALA TNIPKGCAET AVRVHVSYLD GKGNLAPQGS ENSP00000294168/1-622 EGELYFPEDR EVNLVELALA TNIPKGCAET AVRVHVSYLD GKGNLAPQGS ENSBTAP00000012482/1-665 EGELYFPEDR EVNLVELALA TNIPKGCAET ALRVHVSYLD GKGNLAPQGS bmy_19271T0/1-658 EGELYFPEDR EVNLVELALA TNIPKGCAET AVRVHVSYLD GKGNLAPQGS ENSTTRP00000002323/1-594 EGELYFPEDR EVNLVELALA TNIPKGCAET AVRVHVSYLD GKGNLAPQGS 251 300 BACU005362/1-667 VPSAVSSLTD DLLKYYQQVT RAVLGDDPQL MKVALQDLQT NSKIAALLPY ENSP00000294168/1-622 VPSAVSSLTD DLLKYYHQVT RAVLGDDPQL MKVALQDLQT NSKIGALLPY ENSBTAP00000012482/1-665 VPSAVSSLTD DLLKYYQQVT RAVLGDDPQL MKIALHDLQT NSKIAALLPY bmy_19271T0/1-658 VPSAVSSLTD DLLKYYQQVT RAVLGDDPQL MKVALQDLQT NSKIAALLPY ENSTTRP00000002323/1-594 VPSAVSSLTD DLLKYYQQVT RAVLGDDPQL MKVALQDLQT NSKIAALLPY 301 350 BACU005362/1-667 FVYVVSGVKS VSHDLEQLHR LLQVARSLVR NPHLCLGPYV RSLVGSVLYC ENSP00000294168/1-622 FVYVVSGVKS VSHDLEQLHR LLQVARSLFR NPHLCLGPYV RCLVGSVLYC ENSBTAP00000012482/1-665 FVYVVSGVKS VSHDLEQLHR LLQVARSLVR NPHLCLVPYV RSLVGSVLYC bmy_19271T0/1-658 FVYVVSGVKS VSHDLEQLHR LLQVARSLVR NPHLCLGPYV RSLVGSVLYC ENSTTRP00000002323/1-594 FVYVVSGVKS VSHDLEQLHR LLQVARSLVR NPHLCLGPYV RSLVGSVLYC 351 400 BACU005362/1-667 VLEPLAASIN PLNDHWTLRD GAALLLSHIF WTHGDLVSGL YQQILLSLQK ENSP00000294168/1-622 VLEPLAASIN PLNDHWTLRD GAALLLSHIF WTHGDLVSGL YQHILLSLQK ENSBTAP00000012482/1-665 VLEPLAASIN PLNDHWTLRD GAALLLSHIF WTYGDLVNGL YQQILLSLQK bmy_19271T0/1-658 VLEPLAASIN PLNDHWTLRD GAALLLSHIF WTHGDLVSGL YQQILLSLQK ENSTTRP00000002323/1-594 VLEPLAASIN PLNDHWTLRD GAALLLSHIF WTHGDLVSGL YQQILLSLQK 401 450 BACU005362/1-667 VLADPVRPLC SHYGAVVGLH ALGWKAVERV LYPHLSTYWT NLQAVLDDYS ENSP00000294168/1-622 ILADPVRPLC CHYGAVVGLH ALGWKAVERV LYPHLSTYWT NLQAVLDDYS ENSBTAP00000012482/1-665 VLADPVRPLC SHYGAVVGLH ALGWKAVERV LYPHLSTYWT NLQAVLDDYS bmy_19271T0/1-658 VLADP----- ---------- -----AVERV LYPHLSTYWT NLQAVLDDYS ENSTTRP00000002323/1-594 VLADPVRPLC SHYGAVVGLH ALGWKAVERV LYPHLSTYWT NLQAVLDDYS 451 500 BACU005362/1-667 VSNAQVKADG HKVYGAILVA VERLLKMKAQ AAEPNKGGPG SRGCRRSDDL ENSP00000294168/1-622 VSNAQVKADG HKVYGAILVA VERLLKMKAQ AAEPNRGGPG GRGCRRLDDL ENSBTAP00000012482/1-665 VSNAQVKADG HKVYGAILVA VERLLKMKAQ AAEPNKGGPG SRGCQRSDDL bmy_19271T0/1-658 VSNAQVKADG HKVYGAILVA VERLLKMKAQ AAEPNKGGPG SRGCRRSDEL ENSTTRP00000002323/1-594 VSNAQVKADG HKVYGAILVA VERLLKMKAQ AAEPNKGGPG SRGCRRSDDL 501 550 BACU005362/1-667 PWDSLLLQES PSGGSAEPGF GSGLPLPPGG AGPEAPSASV TLADIYRELY ENSP00000294168/1-622 PWDSLLFQES SSGGGAEPSF GSGLPLPPGG AGPEDPSLSV TLADIYRELY ENSBTAP00000012482/1-665 PWDSLLLQES PSGGSAEPGF GSGLPMALGG VGPEDPSPSV TLADIYRELY bmy_19271T0/1-658 PWDSLLLQES PSGGSAEPGF GSGLPLPPGG AGPEAPSASL TLADIYRELY ENSTTRP00000002323/1-594 PWDSLLLQES PSGGSAEPGF GSGLPLPPGG AGPEAPSPSV TLADIYRELY 551 600 BACU005362/1-667 AFFGDSLATR FGTGQPAPTA PRPPGDKKEP AAAPDSGSFS GSCPLYGVAA ENSP00000294168/1-622 AFFGDSLATR FGTGQPAPTA PRPPGDKKEP AAAPDSVRKM PQLTASAIVS ENSBTAP00000012482/1-665 AFFGDSLATR FGTGQPAPTA PRPPGDKKEP ATAPDSVRKM PQLTANAMVS bmy_19271T0/1-658 AFFGDSLATR FGTGQPAPTA PRPPGDKKEP AAAPDSVRKM PQLTANAMVS ENSTTRP00000002323/1-594 AFFGDSLATR FGTGQPAPTA PRPPGDKKEP AAAPDSVRKM PQLTANAMVS 601 650 BACU005362/1-667 LNGSSLAL-- SRPSAPSLCY FVAGASGLLA LYCLLLLLFW VYSSCIEDCH ENSP00000294168/1-622 PHGDESPRGS GGGGPASASG PAASESRPLP R--------- VHRARGAPRQ ENSBTAP00000012482/1-665 PQGDESPR-- -GGGPPSASA PAASESRPLP R--------- VHRARGAPRQ bmy_19271T0/1-658 PQGDESPR-- -GGGPPSASA PAASESRPLP R--------- VHRARGAPRQ ENSTTRP00000002323/1-594 PQGDESPR-- -GGGPPSASA PTASES-PLP R--------- VHRARGAPRQ 651 700 BACU005362/1-667 RGP-IGLRIA LAISAIAIFL VLVSACILRF -----GTSSL CKSIISLNIT ENSP00000294168/1-622 QGPGTGTRDV FQKSRFA--- -PRGAPHFRF IIAGRQAGRR CRGRLFQTAF ENSBTAP00000012482/1-665 QGPGTGTRDV FQKSRFA--- -LRGAPYFRF IIAGRQAGRR CRGRLFQTAF bmy_19271T0/1-658 QGPGAGTRDV FQKSRFA--- -PRGAPHFRF IIAGRQAGRR CRGRLFQTAF ENSTTRP00000002323/1-594 QGPGAGTRDV FQKSRFA--- -PRGAPHFRF IIAGRQAGRR CRGRLFQTAF 701 750 BACU005362/1-667 SCSDAQKTPW IPPGTTLQFY SNLHNAETSS WVNLVLWCVV LVLQVVQWK- ENSP00000294168/1-622 PA------PY GP-------- -----SPASR YVQKLPMIGR TSRPARRWAL ENSBTAP00000012482/1-665 PA------PY GP-------- -----SPASR YVQKLPMIGR TSRPARRWAL bmy_19271T0/1-658 PA------PY GP-------- -----SPASR YVQKLPMIGR TGRPARRWAL ENSTTRP00000002323/1-594 PA------PY GP-------- -----SLASR YVQKL----- ---------- 751 800 BACU005362/1-667 SEATPYRPLE RGDPVWSSET DALVGSRLSH S ENSP00000294168/1-622 SDYSLYLPL- ---------- ---------- - ENSBTAP00000012482/1-665 SDYSLYLPL- ---------- ---------- - bmy_19271T0/1-658 SDYSLYLPL- ---------- ---------- - ENSTTRP00000002323/1-594 ---------- ---------- ---------- -