KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:06 2014 Check: 00 .. Name: ENSTTRP00000002326/1-618 Len: 956 Check: 5958 Weight: 1.00 Name: ENSP00000436679/1-619 Len: 956 Check: 7094 Weight: 1.00 Name: bmy_19269T0/1-949 Len: 956 Check: 8939 Weight: 1.00 Name: BACU005360/1-650 Len: 956 Check: 6676 Weight: 1.00 Name: ENSBTAP00000012486/1-620 Len: 956 Check: 4930 Weight: 1.00 // 1 50 ENSTTRP00000002326/1-618 MTDEGKSYNE HDD-RVGFPQ RRKKGRGPFR WKYGEGNRRS GRGGFVVRSS ENSP00000436679/1-619 MADEGKSYSE HDDERVNFPQ RKKKGRGPFR WKYGEGNRRS GRGGSGIRSS bmy_19269T0/1-949 MADEGKSYNE HDD-RVSFPQ RRKKGRGPFR WKYGEGNRRS GRGGPVVRCS BACU005360/1-650 MADEGKSYNE HDD-RVSFPQ RRKKGRGPFR WKYGEGSRRS GRGGPVVRCS ENSBTAP00000012486/1-620 MADEGKSYNE HDD-RVSFPQ RRKKGRGPFR WKSGEGNRRS GRGGSSVRSS 51 100 ENSTTRP00000002326/1-618 RLEEENRDVA MSDAQDVSRV RYNPYAARPN RRGDNWHERS RIHVTVPLRR ENSP00000436679/1-619 RLEEDDGDVA MSDAQDGPRV RYNPYTTRPN RRGDTWHDRD RIHVTV--RR bmy_19269T0/1-949 RLEEDDRDVA MSDAQDVPRV RYNPYAARPN RRGESWHERS RIHVTVPLRR BACU005360/1-650 RLEEDDRDVA MSDAQDVPRV RYNPYAARPN RRGESWHERS RIHVTVPLRR ENSBTAP00000012486/1-620 RLEDDDRDVA MSDVQDAPRV RYTPYAARPN RRGDNWNERT RIHVTLPLRR 101 150 ENSTTRP00000002326/1-618 DRAPPERGGA GTSQDGTSKN WFKITIPYGR KYDKSWLLSM IQSKCSIPFT ENSP00000436679/1-619 DRAPPERGGA GTSQDGTSKN WFKITIPYGR KYDKAWLLSM IQSKCSVPFT bmy_19269T0/1-949 DRAPPERGGA GTSQDGTSKN WFKITIPYGR KYDKSWLLSV IQSKCSVPFT BACU005360/1-650 DRAAPERGGA GTSQDGTSKN WFKITIPYGR KYDKSWLLSM IQSKCSVPFT ENSBTAP00000012486/1-620 DRSAAERGGA GTSQDGTSKN WFKITIPYGR KYDKSWLLNV IQSKCSVPFT 151 200 ENSTTRP00000002326/1-618 PIEFHYENTR ALFFVEDAST ASALKAVNYK ILDRENRR-- ---------- ENSP00000436679/1-619 PIEFHYENTR AQFFVEDAST ASALKAVNYK ILDRENRR-- ---------- bmy_19269T0/1-949 PIEFHYENTR AQFFVEDAST ASALKAVNYK ILDRENRRVC VKGLAWLGVG BACU005360/1-650 PIEFHYENTR AQFFVEDAST ASALKAVNYK ILDRENRR-- ---------- ENSBTAP00000012486/1-620 PIEFHYENTR AQFFVEDAST ASALKAVNYK ILDRENRR-- ---------- 201 250 ENSTTRP00000002326/1-618 ---------- ---------- ---------I SIIINSSLPP HTVQNELKPE ENSP00000436679/1-619 ---------- ---------- ---------I SIIINSSAPP HTILNELKPE bmy_19269T0/1-949 IGAQGMDWVL VLGLRPPWSS PCPCVSPLQI SIIINSSPPP HTVQNELKPE BACU005360/1-650 ---------- ---------- ---------I SIIINSSPPP HTVQNELKPE ENSBTAP00000012486/1-620 ---------- ---------- ---------I SIIINSSSPP HSVQNELKPE 251 300 ENSTTRP00000002326/1-618 QAEQLKLVMS KRYDGSQQAL DLKGLRSDPD LVAQNIDVVL NRRSCMAATL ENSP00000436679/1-619 QVEQLKLIMS KRYDGSQQAL DLKGLRSDPD LVAQNIDVVL NRRSCMAATL bmy_19269T0/1-949 QVEQLKLIMS KRYDGSQQAL DLKGLRSDPD LVAQNIDVVL NRRSCMAATL BACU005360/1-650 QVEQLKLIMS KRYDGSQQAL DLKGLRSDPD LVAQNIDVVL NRRSCMAATL ENSBTAP00000012486/1-620 QVEQLKLIMS KRYDGSQQAL DLKGLRSDPD LVAQNIDVVL NRRSCMAATL 301 350 ENSTTRP00000002326/1-618 RIIEENIPEL LSLNLSNNKL YRLDDLSSIV XXXXXXXXXX XXXXXXXXXX ENSP00000436679/1-619 RIIEENIPEL LSLNLSNNRL YRLDDMSSIV QKAPNLKILN LSGNELKSER bmy_19269T0/1-949 RIIEENIPEL LSLNLSNNKL YRLDDLSSIV QKAPNLKILN LSGNELKSER BACU005360/1-650 RIIEENIPEL LSLNLSNNKL YRLDDLSSIV QKAPNLKILN LSGNELKSER ENSBTAP00000012486/1-620 RIIEENIPEL LSLNLSNNKL YRLDDLSSIV QKAPNLKILN LSGNELKSER 351 400 ENSTTRP00000002326/1-618 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXAVRERFPK LLRLDGHELP ENSP00000436679/1-619 ELDKIKGLKL EELWLDGNSL CDTFRDQSTY ISAIRERFPK LLRLDGHELP bmy_19269T0/1-949 ELDKIKGLKL EELWLEGNTL CDTFRDQSTY ISAVRERFPK LLRLDSHELP BACU005360/1-650 ELDKIKGLKL EELWLEENTL CDTFRDQSTY ISAVRERFPK LLRLDGHELP ENSBTAP00000012486/1-620 ELDKIKGLKL EELWLDGNTL CDTFRDQSTY ISAVRERFPK LLRLDGHELP 401 450 ENSTTRP00000002326/1-618 PPIAFDIEAP TVLPPCKGSY FGTETLKNLV LHFLQQYYAI YDSGDRQQLL ENSP00000436679/1-619 PPIAFDVEAP TTLPPCKGSY FGTENLKSLV LHFLQQYYAI YDSGDRQGLL bmy_19269T0/1-949 PPIAFDVEAP TVLPPCKGSY FGTETLKNLV LHFLQQYYAI YDSGDRQRLL BACU005360/1-650 PPIAFDVEAP TVLPPCKGSY FGTETLKNLV LHFLQQYYAI YDSGDRQRLL ENSBTAP00000012486/1-620 PPIAFDVEAP TTLPPCKGSY FGTETLKNLV LHFLQQYYAV YDSGDRQRLL 451 500 ENSTTRP00000002326/1-618 DAYHDGACCS LSIPFTPQNP ARSNLAEYFK DSRNVKKLKD PTLR-SLLKH ENSP00000436679/1-619 DAYHDGACCS LSIPFIPQNP ARSSLAEYFK DSRNVKKLKD PTLRFRLLKH bmy_19269T0/1-949 DAYHDGACCS LSIPFTPQNP ARSNLAEYFK DSRNVKKLKD PTLRFRLLKH BACU005360/1-650 DAYHDGACCS LSIPFTPQNP A--------- --RNVKKLKD PTLRFRLLKH ENSBTAP00000012486/1-620 DAYHDGACCS LSIPFTPQNP ARSNLAEYFK DSRNVKKLKD PTLRFRLLKH 501 550 ENSTTRP00000002326/1-618 TRLN-VAVLN ELPKTQHDVS SFVVDISAQT ---------- ---------- ENSP00000436679/1-619 TRLNVVAFLN ELPKTQHDVN SFVVDISAQT ---------- ---------- bmy_19269T0/1-949 TRLNVVAFLN ELPKTQHDVN SFVVDISAQT ---KCGIGEG AVKRQGGLRL BACU005360/1-650 TRLNVVAFLN ELPKTQHDVT SFVVDISAQT VSTCVFLGRS VELGRGQRRG ENSBTAP00000012486/1-620 TRLNVVAFLN ELPKTQHDIN SFVVDISAQT ---------- ---------- 551 600 ENSTTRP00000002326/1-618 ---------- ---------- -STLLC-FSV NGVFKE---- --------VD ENSP00000436679/1-619 ---------- ---------- -STLLC-FSV NGVFKE---- --------VD bmy_19269T0/1-949 RLGADGVPDA AASLSEHV-- -AVFFCQWSL QRRWGSLESR VVTIGIIAVD BACU005360/1-650 REDAGSGWEP TGYLMLLLLF QSTLLC-FSV NGVFKE---- --------VD ENSBTAP00000012486/1-620 ---------- ---------- -STLLC-FSV NGVFKE---- --------VD 601 650 ENSTTRP00000002326/1-618 GKSRDSLRAF TRTFVAVPAS NSGLCIVNDE LFVRNASPDE IQRAFAMPAP ENSP00000436679/1-619 GKSRDSLRAF TRTFIAVPAS NSGLCIVNDE LFVRNASSEE IQRAFAMPAP bmy_19269T0/1-949 GKSRDSLRAF TRTFVAVPAS NSGLCIVNDE LFVRNAGPDE TRRAFAMPAP BACU005360/1-650 GKSRDSLRAF TRTFVAVPAS NSGLCIVNDE LFVRNAGPDE TRRAFAMPAP ENSBTAP00000012486/1-620 GKSRDSLRAF TRTFVAVPAS NSGLCIVNDE LFVRNASADE IQRAFAMPAP 651 700 ENSTTRP00000002326/1-618 TPSSSPVPTL SPEQQEMVQA FSTQSGMNLE WSQKCLQDNN WDYTRSAQAF ENSP00000436679/1-619 TPSSSPVPTL SPEQQEMLQA FSTQSGMNLE WSQKCLQDNN WDYTRSAQAF bmy_19269T0/1-949 TPSSSPVPTL SPEQQEMLQA FSTQSGMNLE WSQKCLQDNN WDYTRSAQAF BACU005360/1-650 TPSSSPVPTL SPEQQEMLQA FSTQSGMNLE WSQKCLQDNN WDYTRSAQAF ENSBTAP00000012486/1-620 TPSSSPVPTL SPEQQEMLQA FSTQSGMNLE WSQKCLQDNN WDYTRSAQAF 701 750 ENSTTRP00000002326/1-618 THLKA----- ---------- ---------- ---------- ---------- ENSP00000436679/1-619 THLKA----- ---------- ---------- ---------- ---------- bmy_19269T0/1-949 THLKPCPSQA RAGAGAGPGL GSPRLAWGGQ MDSEGGGAGP AAGSPAPEAA BACU005360/1-650 THLKA----- ---------- ---------- ---------- ---------- ENSBTAP00000012486/1-620 THLKA----- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000002326/1-618 ---------- ---------- ---------- ---------- ---------- ENSP00000436679/1-619 ---------- ---------- ---------- ---------- ---------- bmy_19269T0/1-949 PLRAMAAPGR RWAVRLFSAL QSLPARRALH DAAPPRDVLL FEYERGRFFA BACU005360/1-650 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012486/1-620 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000002326/1-618 ---------- ---------- ---------- ---------- ---------- ENSP00000436679/1-619 ---------- ---------- ---------- ---------- ---------- bmy_19269T0/1-949 VLGLFCAGQG VFWASLAIAA LARPPAPTRP PDAESPGRGR LDLRSALWRY BACU005360/1-650 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012486/1-620 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000002326/1-618 ---------- ---------- ---------- ---------- ---------- ENSP00000436679/1-619 ---------- ---------- ---------- ---------- ---------- bmy_19269T0/1-949 GLAVGCGAIG TLVLGAGLLF SLRSVRSVML QAGGKQVTLT THAPFGWGAH BACU005360/1-650 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012486/1-620 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000002326/1-618 ---------- ---KGEIPEV AFIK------ ---------- ---------- ENSP00000436679/1-619 ---------- ---KGEIPEV AFMK------ ---------- ---------- bmy_19269T0/1-949 FTVPLNQVSC MAHRGEVPAM LPLKVKGRRF YFLLDKAGHF PNTKLFDNTV BACU005360/1-650 ---------- ---KGEIPEV AFIK------ ---------- ---------- ENSBTAP00000012486/1-620 ---------- ---KGEIPEV AFMK------ ---------- ---------- 951 1000 ENSTTRP00000002326/1-618 ------ ENSP00000436679/1-619 ------ bmy_19269T0/1-949 GAYRSL BACU005360/1-650 ------ ENSBTAP00000012486/1-620 ------