KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:10 2014 Check: 00 .. Name: ENSTTRP00000007320/1-869 Len: 904 Check: 8964 Weight: 1.00 Name: bmy_04535T0/1-693 Len: 904 Check: 4395 Weight: 1.00 Name: ENSBTAP00000012501/1-873 Len: 904 Check: 2092 Weight: 1.00 Name: ENSP00000383042/1-876 Len: 904 Check: 265 Weight: 1.00 Name: BACU005762/1-776 Len: 904 Check: 217 Weight: 1.00 // 1 50 ENSTTRP00000007320/1-869 MLSWKASVAA ---AAVTVAA GSEAGSGAAG XF-----VPA PPAGLSGPAE bmy_04535T0/1-693 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012501/1-873 MLSGKKAAAA AAAAAAAAAA GSEAGAGVAG GAENGSEVAA PPAGLSGPGE ENSP00000383042/1-876 MLSGKKAAAA -AAAAAAAAT GTEAGPGTAG GSENGSEVAA QPAGLSGPAE BACU005762/1-776 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000007320/1-869 AGPGAAGERT PRKKEPPRSS PPGGLAEPPG SAGPQAGPTV VPGSATPMET bmy_04535T0/1-693 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012501/1-873 AGPGAAGERT PRKKEPPRAS PPGGLAEPPG SAGPQAGPTA VPGSATPMET ENSP00000383042/1-876 VGPGAVGERT PRKKEPPRAS PPGGLAEPPG SAGPQAGPTV VPGSATPMET BACU005762/1-776 ---------- ---------- ---------- ---------- -------MET 101 150 ENSTTRP00000007320/1-869 GIAETPEGRR TSRCKRAKVE YREMDESLAN LSEDEYYSEE ERNAKAEKEK bmy_04535T0/1-693 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012501/1-873 GIAETPEGRR TSRRKRAKVE YREMDESLAN LSEDEYYSEE ERNAKAEKEK ENSP00000383042/1-876 GIAETPEGRR TSRRKRAKVE YREMDESLAN LSEDEYYSEE ERNAKAEKEK BACU005762/1-776 GIAETPEGRR TSRRKRAKVE YREMDESLAN LSEDEYYSEE ERNAKAEKEK 151 200 ENSTTRP00000007320/1-869 KLPPPPPQAP PEEENESEPE EPSGQAGGLQ DDSSGGYGDG QASGVEGAAF bmy_04535T0/1-693 ---------- ---------- --TGQAGGLQ DDSSGGYGDG QASGVEGAAF ENSBTAP00000012501/1-873 KLPPPPPQAP PEEENESEPE EPSGQAGGLQ DDSSGGYGDG QASGVEGAAF ENSP00000383042/1-876 KLPPPPPQAP PEEENESEPE EPSGQAGGLQ DDSSGGYGDG QASGVEGAAF BACU005762/1-776 KLPPPPPQAP PEEENESEPE EPSGQAGGLQ DDSSGGYGDG QASGVEGAAF 201 250 ENSTTRP00000007320/1-869 QSRLPHDRMT SQEAACFPDI ISGPQQTQKV FLFIRNRTLQ LWLDNPKIQL bmy_04535T0/1-693 QSRLPHDRMT SQEAACFPDI ISGPQQTQKV FLFIRNRTLQ LWLDNPKIQL ENSBTAP00000012501/1-873 QSRLPHDRMT SQEAACFPDI ISGPQQTQKV FLFIRNRTLQ LWLDNPKIQL ENSP00000383042/1-876 QSRLPHDRMT SQEAACFPDI ISGPQQTQKV FLFIRNRTLQ LWLDNPKIQL BACU005762/1-776 QSRLPHDRMT SQEAACFPDI ISGPQQTQKV FLFIRNRTLQ LWLDNPKIQL 251 300 ENSTTRP00000007320/1-869 TFEATLQQLE APYNSDTVLV HRVHSYLERH GLINFGIYKR IKPLPTKKTG bmy_04535T0/1-693 TFEATLQQLE APYNSDTVLV HRVHSYLERH GLINFGIYKR IKPLPTKKTG ENSBTAP00000012501/1-873 TFEATLQQLE APYNSDTVLV HRVHSYLERH GLINFGIYKR IKPLPTKKTG ENSP00000383042/1-876 TFEATLQQLE APYNSDTVLV HRVHSYLERH GLINFGIYKR IKPLPTKKTG BACU005762/1-776 TFEATLQQLE APYNSDTVLV HRVHSYLERH GLINFGIYKR IKPLPTKKTG 301 350 ENSTTRP00000007320/1-869 KVIIIGSGVS GLAAARQLQS FGMDVTLLEA RDRVGGRVAT FRKGNYVADL bmy_04535T0/1-693 KVIIIGSGVS GLAAARQLQS FGMDVTLLEA R--------F F--------- ENSBTAP00000012501/1-873 KVIIIGSGVS GLAAARQLQS FGMDVTLLEA RDRVGGRVAT FRKGNYVADL ENSP00000383042/1-876 KVIIIGSGVS GLAAARQLQS FGMDVTLLEA RDRVGGRVAT FRKGNYVADL BACU005762/1-776 KVIIIGSGVS GLAAARQLQS FGMDVTLLEA RDRVGGRVAT FRKGNYVADL 351 400 ENSTTRP00000007320/1-869 GAMVVTGLGG NPMAVVSKQV NMELAKIKQK CPLYEANGQA DTVKVPKEKD bmy_04535T0/1-693 -------LGG NPMAVVSKQV NMELAKIKQK CPLYEANGQA ----VPKEKD ENSBTAP00000012501/1-873 GAMVVTGLGG NPMAVVSKQV NMELAKIKQK CPLYEANGQA ----VPKEKD ENSP00000383042/1-876 GAMVVTGLGG NPMAVVSKQV NMELAKIKQK CPLYEANGQA DTVKVPKEKD BACU005762/1-776 GAMVVTGLGG NPMAVVSKQV NMELAKIKQK CPLYEANGQA ----VPKEKD 401 450 ENSTTRP00000007320/1-869 EMVEQEFNRL LEATSYLSHQ LDFNVLNNKP VSLGQALEVV IQLQEKHVKD bmy_04535T0/1-693 EMVEQEFNRL LEATSYLSHQ LDFNVLNNKP VSLGQALEVV IQLQEKHVKD ENSBTAP00000012501/1-873 EMVEQEFNRL LEATSYLSHQ LDFNVLNNKP VSLGQALEVV IQLQEKHVKD ENSP00000383042/1-876 EMVEQEFNRL LEATSYLSHQ LDFNVLNNKP VSLGQALEVV IQLQEKHVKD BACU005762/1-776 EMVEQEFNRL LEATSYLSHQ LDFNVLNNKP VSLGQALEVV IQLQEKHVKD 451 500 ENSTTRP00000007320/1-869 EQIEHWKKIV KTQEELKELL NKXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04535T0/1-693 EQIEHWKKIV KTQEELKELL NKMVNLKEKI KELHQQYKEA SEVKPPRDIT ENSBTAP00000012501/1-873 EQIEHWKKIV KTQEELKELL NKMVNLKEKI KELHQQYKEA SEVKPPRDIT ENSP00000383042/1-876 EQIEHWKKIV KTQEELKELL NKMVNLKEKI KELHQQYKEA SEVKPPRDIT BACU005762/1-776 EQIEHWKKIV KTQEELKELL NKMVNLKEKI KELHQQYKEA SEVKPPRDIT 501 550 ENSTTRP00000007320/1-869 XXXXXXXXXX XXXXXCKEYD ELAETQGKLE EKLQELEANP PSDVYLSSRD bmy_04535T0/1-693 AEFLVKSKHR DLTALCKEYD ELAETQGKLE EKLQELEANP PSDVYLSSRD ENSBTAP00000012501/1-873 AEFLVKSKHR DLTALCKEYD ELAETQGKLE EKLQELEANP PSDVYLSSRD ENSP00000383042/1-876 AEFLVKSKHR DLTALCKEYD ELAETQGKLE EKLQELEANP PSDVYLSSRD BACU005762/1-776 AEFLVKSKHR DLTALCKEYD ELAETQGKLE EKLQELEANP PSDVYLSSRD 551 600 ENSTTRP00000007320/1-869 RQILDWHFAN LEFANATPLS TLSLKHWDQD DDFEFTGSHL TVRNGYSCVP bmy_04535T0/1-693 RQILDWHFAN LEFANATPLS TLSLKHWDQD DDFEFTGSHL TVRNGYSCVP ENSBTAP00000012501/1-873 RQILDWHFAN LEFANATPLS TLSLKHWDQD DDFEFTGSHL TVRNGYSCVP ENSP00000383042/1-876 RQILDWHFAN LEFANATPLS TLSLKHWDQD DDFEFTGSHL TVRNGYSCVP BACU005762/1-776 RQILDWHFAN LEFANATPLS TLSLKHWDQD DDFEFTGSHL TVRNGYSCVP 601 650 ENSTTRP00000007320/1-869 VALAEGLDIK LNTAVRQVRY TA-------- ---------- ---------S bmy_04535T0/1-693 VALAEGLDIK LNTAVRQVRY TASGTSLLGS SGTHPLYFTI CILVFGFSYS ENSBTAP00000012501/1-873 VALAEGLDIK LNTAVRQVRY TA-------- ---------- ---------S ENSP00000383042/1-876 VALAEGLDIK LNTAVRQVRY TA-------- ---------- ---------S BACU005762/1-776 VALAEGLDIK LNTAVRQVRY TA-------- ---------- ---------S 651 700 ENSTTRP00000007320/1-869 GCEVIAVNTR STSQTFIYKC DAVLCTLPLG VLKQQPPAVQ FVPPLPEWKT bmy_04535T0/1-693 GCEVIAVNTR STSQTFIYKC DAVLCTLPLG VLKQQPPAVQ FVPPLPEWKT ENSBTAP00000012501/1-873 GCEVIAVNTR STSQTFIYKC DAVLCTLPLG VLKQQPPAVQ FVPPLPEWKT ENSP00000383042/1-876 GCEVIAVNTR STSQTFIYKC DAVLCTLPLG VLKQQPPAVQ FVPPLPEWKT BACU005762/1-776 GCEVIAVNTR STSQTFIYKC DAVLCTLPLG VLKQQPPAVQ FVPPLPEWKT 701 750 ENSTTRP00000007320/1-869 SAVQRMGFGN LNKVVLCFDR VFWDPSVNLF GHVGSTTASR GELFLFWNLY bmy_04535T0/1-693 SAVQRMGFGN LNKVVLCFDR VFWDPSVNLF GHVGSTTASR ---------- ENSBTAP00000012501/1-873 SAVQRMGFGN LNKVVLCFDR VFWDPSVNLF GHVGSTTASR GELFLFWNLY ENSP00000383042/1-876 SAVQRMGFGN LNKVVLCFDR VFWDPSVNLF GHVGSTTASR GELFLFWNLY BACU005762/1-776 SAVQRMGFGN LNKVVLCFDR VFWDPSVNLF GHVGSTTASR GELFLFWNLY 751 800 ENSTTRP00000007320/1-869 KAPILLALVA GEAAGIMENI SDDVIVGRCL AILKGIFGSS AVPQPKETVV bmy_04535T0/1-693 -APILLALVA GEAAGIMENI SDDVIVGRCL AILKGIFGSS AVPQPKETVV ENSBTAP00000012501/1-873 KAPILLALVA GEAAGIMENI SDDVIVGRCL AILKGIFGSS AVPQPKETVV ENSP00000383042/1-876 KAPILLALVA GEAAGIMENI SDDVIVGRCL AILKGIFGSS AVPQPKETVV BACU005762/1-776 KAPILLALVA GEAAGIMENI SDDVIVGRCL AILKGIFGSS AVPQPKETVV 801 850 ENSTTRP00000007320/1-869 SRWRADPWAR GSYSYVAAGS SGNDYDLMAQ PITPGPSIPG APQPIPRLFF bmy_04535T0/1-693 SRWRADPWAR GSYSYVAAGS SGNDYDLMAQ PITPGPSIPG APQPIPRLFF ENSBTAP00000012501/1-873 SRWRADPWAR GSYSYVAAGS SGNDYDLMAQ PITPGPSIPG APQPIPRLFF ENSP00000383042/1-876 SRWRADPWAR GSYSYVAAGS SGNDYDLMAQ PITPGPSIPG APQPIPRLFF BACU005762/1-776 SRWRADPWAR GSYSYVAAGS SGNDYDLMAQ PITPGPSIPG APQPIPRLFF 851 900 ENSTTRP00000007320/1-869 AGEHTIRNYP ATVHGALLSG LREAGRIADQ FLGAMYTLPR QATPGVPAQQ bmy_04535T0/1-693 AGEHTIRNYP ATVHGALLSG LREAGRIADQ FLGAMYTLPR QATPGVPAQQ ENSBTAP00000012501/1-873 AGEHTIRNYP ATVHGALLSG LREAGRIADQ FLGAMYTLPR QATPGVPAQQ ENSP00000383042/1-876 AGEHTIRNYP ATVHGALLSG LREAGRIADQ FLGAMYTLPR QATPGVPAQQ BACU005762/1-776 AGEHTIRNYP ATVHGALLSG LREAGRIADQ FLGAMYTLPR QATPGVPAQQ 901 950 ENSTTRP00000007320/1-869 SPSM bmy_04535T0/1-693 SPSM ENSBTAP00000012501/1-873 SPSM ENSP00000383042/1-876 SPSM BACU005762/1-776 SPSM