KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:11 2014 Check: 00 .. Name: ENSBTAP00000012504/1-1031 Len: 1083 Check: 7136 Weight: 1.00 Name: ENSP00000303758/1-1076 Len: 1083 Check: 3528 Weight: 1.00 Name: bmy_04536T0/1-1064 Len: 1083 Check: 1945 Weight: 1.00 Name: BACU005763/1-1071 Len: 1083 Check: 3712 Weight: 1.00 Name: ENSTTRP00000007323/1-1037 Len: 1083 Check: 3328 Weight: 1.00 // 1 50 ENSBTAP00000012504/1-1031 MAEFTSYKDT ASSRHLRFKL QSLSRRLDEL EEATKNLQKA EDELLDLQDK ENSP00000303758/1-1076 MAEFTSYKET ASSRHLRFKL QSLSRRLDEL EEATKNLQKA EDELLDLQDK bmy_04536T0/1-1064 MAEFTSYKDT ASSRHLRFKL QSLSRRLDEL EEATKNLQKA EDELLDLQDK BACU005763/1-1071 MAEFTSYKDT ASSRHLRFKL QSLSRRLDEL EEATKNLQKA EDELLDLQDK ENSTTRP00000007323/1-1037 MAEFTSYKDT ASSRHLRFKL QSLSRRLDEL EEATKNLQKA EDELLDLQDK 51 100 ENSBTAP00000012504/1-1031 VIQAEGSNSS MLAEVEVLRQ RVLRIEGKDE EIKKAEDLCQ LMKEKLEEEE ENSP00000303758/1-1076 VIQAEGSNSS MLAEIEVLRQ RVLRIEGKDE EIKRAEDLCR LMKEKLEEEE bmy_04536T0/1-1064 VIQAEGSNSS MLAEIEVLRQ RVLRIEGKDE EIKRAEDLCQ QMKEKLEEEE BACU005763/1-1071 VIQAEGSNSS MLAEIEVLRQ RVLRIEGKDE EIKRAEDLCQ QMKEKLEEEE ENSTTRP00000007323/1-1037 VIQAEGSNSS MLAEIEVLRQ RVLRIEGKDE EIKRAEDLCQ QMKEKLEEEE 101 150 ENSBTAP00000012504/1-1031 NLTRELKSEI ERLQKRMAEL EKLEEAFSRS KNDCTQLCLS LNEERNLTKK ENSP00000303758/1-1076 NLTRELKSEI ERLQKRMAEL EKLEEAFSRS KNDCTQLCLS LNEERNLTKK bmy_04536T0/1-1064 NLTRELKSEI ERLQKRMAEL EKLEEAFSRS KNDCTQLCLS LNEERNLTKK BACU005763/1-1071 NLTRELKSEI EQLQKRMAEL EKLEEAFSRS KNDCTQLCLS LNEERNLTKK ENSTTRP00000007323/1-1037 NLTRELKSEI ERLQKRMAEL EKLEEAFSRS KNDCTQLCLS LNEERNLTKK 151 200 ENSBTAP00000012504/1-1031 ISSELEMLRI KVKELESSED RLDKTEQSLV SELEKLKSLT LSFVSERKYL ENSP00000303758/1-1076 ISSELEMLRV KVKELESSED RLDKTEQSLA SELEKLKSLT LSFVSERKYL bmy_04536T0/1-1064 ISSELEMLRV KVKELESSED RLDKTEQSLV SELEKLKSLT LTFVSERKYL BACU005763/1-1071 ISSELEMLRV KVKELESSED RLDKTEQSLV SELEKLKSLT LTFVSERKYL ENSTTRP00000007323/1-1037 ISSELEMLRV KVKELESSED RLDKTEQSLV SELEKLKSLT LTFVSERKYL 201 250 ENSBTAP00000012504/1-1031 NEKEKENEKL IKELTQKLEQ NKKMNRDYTR NASNLLERND LRIEDGISSP ENSP00000303758/1-1076 NEKEKENEKL IKELTQKLEQ NKKMNRDYTR NASN-LERND LRIEDGISST bmy_04536T0/1-1064 NEKEKENEKL IKELTQKLEQ NKKMNRDYTR NASNLLERND LRIEDGISST BACU005763/1-1071 NEKEKENEKL IKELTQKLEQ NKKMNRDYTR NASNLLERND LRIEDGISST ENSTTRP00000007323/1-1037 NEKEKENEKL IKELTQKLEQ NKKMNRDYTR NASNLLERND LRIEDGISST 251 300 ENSBTAP00000012504/1-1031 LPSKESRRKG ALDYLKLAEN ETRNKSENEK NRNQEDNKVK DLTQEIEKLK ENSP00000303758/1-1076 LPSKESRRKG GLDYLKQVEN ETRNKSENEK NRNQEDNKVK DLNQEIEKLK bmy_04536T0/1-1064 LPSKESRRKG TLDYLKQVEN ETRNKSENEK NRNQEDNKVK DLNQEIEKLK BACU005763/1-1071 LPSKESRRKG TLDYLKQVEN ETRNKSENEK NRNQEDNKVK DLNQEIEKLK ENSTTRP00000007323/1-1037 LPSKESRRKG TLDYLKQVEN ETRNKSENEK NRNQEDNKVK DLNQEIEKLK 301 350 ENSBTAP00000012504/1-1031 TQIKHFESLE EELKKMRAKN NDLQDNYLSE QNKNKLLASQ LEEIKLQIKK ENSP00000303758/1-1076 TQIKHFESLE EELKKMKSKN NDLQDNYLSE QNKNKLLASQ LEEIKLQIKK bmy_04536T0/1-1064 TQIKHFESLE EELKKMRAKN NDLQDNYLSE QNKNKLLASQ LEEIKLQIKK BACU005763/1-1071 TQIKHFESLE EELKKMRAKN NDLQDNYLSE QNKNKLLASQ LEEIKLQIKK ENSTTRP00000007323/1-1037 TQIKHFESLE EELKKMRAKN NDLQDNYLSE QNKNKLLASQ LEEIKLQIKK 351 400 ENSBTAP00000012504/1-1031 QKELENGEVE GEDAFLSGRG RHERTKLRGH GSEAS-AKHM ARELSPQHKR ENSP00000303758/1-1076 QKELENGEVE GEDAFLSSKG RHERTKFRGH GSEASVSKHT ARELSPQHKR bmy_04536T0/1-1064 QKELENGEVE GEDAFLSSKG RHERTKFRGH GNEAPVSKHT PRELSPHHKR BACU005763/1-1071 QKELENGEVE GEDAFLSSKG RHERTKFRGH GNEAPVSKHT PRELSPQHKR ENSTTRP00000007323/1-1037 QKELENGEVE GEDAFLSSKG RHERTKFRAH GNEAPVSKQT PRELSPQHKR 401 450 ENSBTAP00000012504/1-1031 ERHCNRELTL NNEN-PLKNR QVSSPSFTNR KTAKASHAGA GADSGAQETR ENSP00000303758/1-1076 ERLRNREFAL NNENYSLSNR QVSSPSFTNR RAAKASHMGV STDSGTQETK bmy_04536T0/1-1064 ERHRNREFVL NNENYPLSNR QVSSPSFTNR RAAKASNTGA GADSGTQETK BACU005763/1-1071 ERHRNREFVL NNENYPLSNR QVSSPSFTNR RAAKASSTGA GADSGTQETK ENSTTRP00000007323/1-1037 ERHRNREFVL NNENYPLSNR QVSSPSFTNR RAAKASNTGA GADSGTQETK 451 500 ENSBTAP00000012504/1-1031 RTEDRFTAGS SQSEGKKSRE QPPVLSRYPP AAQEHSKVWK GAPKPGTESG ENSP00000303758/1-1076 KTEDRFVPGS SQSEGKKSRE QPSVLSRYPP AAQEHSKAWK GTSKPGTESG bmy_04536T0/1-1064 RTEDRFASGS SQSEGKKSRE QPSVLSRYPP AAQEHNKVWK GTPKPGTESG BACU005763/1-1071 RTEDRFTSGS SQSEGKKSRE QPSVLSRYPP AAQEHNKVWK GTPKPGTESG ENSTTRP00000007323/1-1037 RTEDRFASGS SQSEGKKSRE QPSVLSRYPP AAQEHNKVWK GTPKPGTESG 501 550 ENSBTAP00000012504/1-1031 LKGKVEKATR TFSDNTHGSV SNDVSGRGDK ASETSTEAPF GKRGQVPGSG ENSP00000303758/1-1076 LKGKVEKTTR TFSDTTHGSV PSDPLGRADK ASDTSSETVF GKRGHVLGNG bmy_04536T0/1-1064 LKGKVEKTTR TFGDTTHGSA PNDIPGRGDK ASDTSTEALF GKRGQVPGNG BACU005763/1-1071 LKGKIEKTTR TFSDTTHGSA PNDTSGRGDK ASDTSTEALF GKRGQVPGNG ENSTTRP00000007323/1-1037 LKGKVEKTTR TFSDTTHGSV PNDISGRGDK ASDTSTEALF GKRGQVPGNG 551 600 ENSBTAP00000012504/1-1031 SQITQAADAG SSKAVGALAT SRRSSSEGLS KGKKATSGLE ADTSFPSSKT ENSP00000303758/1-1076 SQVTQAANSG CSKAIGALAS SRRSSSEGLS KGKKAANGLE ADNSCPNSKA bmy_04536T0/1-1064 SQLTQAADSG SSKAMGALAT SRRSSSEGLS KGKKAANGPE ADTSFPNSKA BACU005763/1-1071 SQLTQAADSG SSKAMGALAT SRRSSSEGLS KGKKAANGSE ADTSFPNSKA ENSTTRP00000007323/1-1037 SQITQAADSG SSKAVGALAT SRRSSSEGLS KGKKAANGPE ADTSFPNSKA 601 650 ENSBTAP00000012504/1-1031 PPLSKYPYSS RSQENILQGF STPSKEGVEQ PVAVVMEDSS QHEALRCRVT ENSP00000303758/1-1076 PVLSKYPYSC RSQENILQGF STSHKEGVNQ PAAVVMEDSS PHEALRCRVI bmy_04536T0/1-1064 PPLSKYPYSS RSQENILQGF STPNKEGVDQ PIAVVMEDSS QHEALRCRVI BACU005763/1-1071 SPLSKYPYSS RSQENILQGF STPNKEGVDQ PIAVVMEDSS QHEALRCRVI ENSTTRP00000007323/1-1037 PPLSKYPYSS RSQENILQGF STPSKEGVDQ PIAVVMEDSS QHEALRCRVI 651 700 ENSBTAP00000012504/1-1031 KSSGREKPDS DDDMDMVSLV TAKLVNTTIT PEPEPPHQPQ SREKAKSRGA ENSP00000303758/1-1076 KSSGREKPDS DDDLDIASLV TAKLVNTTIT PEPEPKPQPN SREKAKTRGA bmy_04536T0/1-1064 KSSGREKPDS DDDMDMVSLV TAKLVNTTIT --PEPKQQPN SREKAKSRGG BACU005763/1-1071 KSSGREKPDS DDDMDMVSLV TAKLVNTTIT --PEPKQQPN SREKAKSRGG ENSTTRP00000007323/1-1037 KSSGREKPDS DDDMDMVSLV TAKLVNTTIT --PEPKQQPN SREKAKSRGG 701 750 ENSBTAP00000012504/1-1031 VRASLFENDK DIGTENESGK AVRASANAME LPEANGSGAK SQRPFSPREA ENSP00000303758/1-1076 PRTSLFENDK DAGMENESVK SVRASTNTME LPDTNGAGVK SQRPFSPREA bmy_04536T0/1-1064 LRTSHFENDK DVGTENESGK PVRASTNAVE LPEANGAGVK SQRPFSPREA BACU005763/1-1071 LRTSLFENDK DVGTENESGK PVRASTNAVE LPEANGAGVK SQRPFSPREA ENSTTRP00000007323/1-1037 LRTSLFENDK DVGTENESGK PVRASTNAVE LPEANGAGVK SQRPFSPREA 751 800 ENSBTAP00000012504/1-1031 LRSRAIIKPV IIDKDVKKIM GGSGTEAALE KQKSASKPGP NKVTSSITIY ENSP00000303758/1-1076 LRSRAIIKPV IVDKDVKKIM GGSGTETTLE KQKPVSKPGP NKVTSSITIY bmy_04536T0/1-1064 LRSRAIIKPV IIDKDVKKVM GGSGTEATLE KQKSPSKPGP NKVTSSITIY BACU005763/1-1071 LRSRAIIKPV IIDKDVKKVM GGSGTEATLE KQKSPSKPGP NKVTSSITIY ENSTTRP00000007323/1-1037 LRSRAIIKPV IIDKDVKKVM GGSGTEATLE KQKSTSKPGP NKVTSSITIY 801 850 ENSBTAP00000012504/1-1031 PSDSGSPRAA PGEAARERHT STSNIQVGLP ELASVSNHVS SPFELSIHKH ENSP00000303758/1-1076 PSDSSSPRAA PGEALRERHT STSNIQVGLA ELTSVSNHVS SPFELSIHKH bmy_04536T0/1-1064 PSDSSSPRAA LGEAQRERHT YTSNIQVGPP ELTSVSNHVS SPFELSIHKH BACU005763/1-1071 PSDSSSPRAA LGEAQRERHT STSNIQVGPP ELTSVSNHVS SPFELSIHKH ENSTTRP00000007323/1-1037 PSDSSSPRAA LGEALRERHT STSNIQVGPP ELTSVSNHVS SPFELSIHKH 851 900 ENSBTAP00000012504/1-1031 DITLQLSEAE RTGDGSLKNR PETVVSRSSI IIKPSDPVER NSHAPTVETI ENSP00000303758/1-1076 DITLQLAEAE RMADGPLKDR PETVVSRSSI IIKPSDPVER NSHAPPAETI bmy_04536T0/1-1064 DITLQFTEAE RMGDGAPKNR PEXVVSRSSI IIKPSDPVER NSHAPTAETI BACU005763/1-1071 DITLQFTEAE RMGDGAPKNR PETVVSRSSI IIKPSDPVER NSHAPTAETI ENSTTRP00000007323/1-1037 DITLQFTEAE RMGDGAPKNR PETVVSRSSI IIKPSDPVER NSHAPTAETI 901 950 ENSBTAP00000012504/1-1031 RWKSHSAPLE AGSPDARHIT VRNAWKSRRD LNSSEDSPAR VGRHVESPNP ENSP00000303758/1-1076 RWKSHSAPSE VGFSDARHVT VRNAWKSRRD LKSLEDPPTR IGKNVESTNS bmy_04536T0/1-1064 RWKSHSGPLE AGSSDARHVT VRNAWKSRRD LNSLEDPPTR IGKNVESTNT BACU005763/1-1071 RWKSHSGPLE VGSSDGRHVT VRNAWKSRRD LNSLEDPPTR IGKNVESTNT ENSTTRP00000007323/1-1037 RWKSHSGPLE VGSSDARHVT VRNAWKSRRD LNSLEDPPTR IGKNVESTNT 951 1000 ENSBTAP00000012504/1-1031 --HTQRSSSD CSDPEQPGSY LSEQGTRRGG -TSGEVPELA SRRTQSSLAV ENSP00000303758/1-1076 NAYTQRSSTD FSELEQPRSC LFEQGTRRVG PSSGDAPEPS SRRTQSSLTV bmy_04536T0/1-1064 --YIQRSSTD YSDLEQPSSY LFEQGTRRVG -NSGDAPELS SRRTQSSLTV BACU005763/1-1071 --YIQRSSTD YSDLEQPSSY LFEQGTRRVG -NSGDAPELS SRRTQSSLTV ENSTTRP00000007323/1-1037 --YIQRSSTD YSDLEQPSSY LFEQGTRRVG -NSGDAPELS SRRTQSSLTV 1001 1050 ENSBTAP00000012504/1-1031 SEVFTRRSRA GDAVPAEAWN HLAGTVGPAS --PPCPLL-- ---------- ENSP00000303758/1-1076 SEVLTRRNRV GDTITVAAWN HSASMEEEGE ---DCTLSV- -YRQLHNSLD bmy_04536T0/1-1064 SEALTRRNRV GDAITAEAWN HLAGMVSPTS FPLSCSPSTF PFSPLLSFLF BACU005763/1-1071 SEVLTRRNRV GDAVTAEAWN HLAGM-EEGD ---DCTLSV- -YRRLHNSLE ENSTTRP00000007323/1-1037 SEVLTRRNRV GDTVTAEAWN HLAGM-EEGD ---DCTLSV- -YRRLHNS-- 1051 1100 ENSBTAP00000012504/1-1031 ---------- ---------- ---------- --- ENSP00000303758/1-1076 PSELPG-KQG LPESGRVRAE ERLRPTRPCA EEN bmy_04536T0/1-1064 PSALACVTQD YGDCGAGKH- ---------- --- BACU005763/1-1071 RSELSA-KPG LPEPGRSRAE ERLRPNRPCA EED ENSTTRP00000007323/1-1037 ---------- ---------- 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