KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:13 2014 Check: 00 .. Name: ENSP00000201647/1-723 Len: 859 Check: 3717 Weight: 1.00 Name: ENSBTAP00000012517/1-751 Len: 859 Check: 2410 Weight: 1.00 Name: ENSTTRP00000014829/1-720 Len: 859 Check: 6473 Weight: 1.00 Name: bmy_16799T0/1-735 Len: 859 Check: 8932 Weight: 1.00 Name: BACU009057/1-778 Len: 859 Check: 4689 Weight: 1.00 // 1 50 ENSP00000201647/1-723 MSTATGPEAA PKPSAKSIYE QRKRYSTVVM ADVSQYPVNH LVTFCLGEDD ENSBTAP00000012517/1-751 MSTTSGPEAS LKQSAKSIYE QRKRYSIEVM SDFSTNEVNH LVTFSLGE-D ENSTTRP00000014829/1-720 MSSTTGPEAS PKRSAKSIYE QRKRYSTEVM ADVSQYPVNH LVTFCLGEED bmy_16799T0/1-735 ------MERW LRVQSPPFHI DREQAAINF- -------TEH LVTFCLGEED BACU009057/1-778 MNTSTGPEAS PKRSAKSIYE QRKRYSTEVM ADVSQYPVNH LVTFCLGEED 51 100 ENSP00000201647/1-723 GVHTVEDASR KLAVMDSQGR VWAQEMLLRV SPDHVTLLDP ASKEELESYP ENSBTAP00000012517/1-751 AIHTVEDASQ KLALMDSQGR IWAQDMLLSV SASHVTLLDP VSKEELESYP ENSTTRP00000014829/1-720 GVHTVEDASR KLALMDSQGR VWAQDMLLRV SPTHVALLDP VS-EELESYP bmy_16799T0/1-735 GVHTVEDASR KLALMDSQGR VWAQDMLLR- ---------- ---EELESYP BACU009057/1-778 GVHTVEDASR KLALMDSQGR VWAQDMLLRV SPKHVALLDP VSKEELESYP 101 150 ENSP00000201647/1-723 LGAIVRCDAV MPPGRSRSLL LLVCQEPERA QPDVHFFQGL RLGAELIRED ENSBTAP00000012517/1-751 VSAIVRCDTV RPPGQKRPLL LLVCQEPERA QPDVHFFQGR CVGVESIREE ENSTTRP00000014829/1-720 LSAIVRCDTV IPPGQSCSLL LLVCQEPERT QPDVHFFQGL RLGAELIRED bmy_16799T0/1-735 LSAIVRCDTV IPPGHSSSLM LLVCQEPERT QPDVHFFQGL RLGAELIRED BACU009057/1-778 LSAIVRCDTV IPPGQSCSLL LLVCQEPERT QPDVHFFQGL RLEAELIRED 151 200 ENSP00000201647/1-723 IQGALHNYRS GRGERRAAAL RATQEELQRD RSPAAETPPL QRRPSVRAVI ENSBTAP00000012517/1-751 IQRALHNYRS GCGERRAAAL RATRMQPQQH PSPVAEAAPL PHCPMFRAAI ENSTTRP00000014829/1-720 IQGALHNYRS GRGERRAAAL RATRKELQCH PSPAAETPPL QHRPTVRAAI bmy_16799T0/1-735 IQGALHNYRS GRGERRAAAL RATRKELQCH PSPAAETPPP QHRPTVRAAI BACU009057/1-778 IQGALHNYRS GRGERRAAAL RATRKELQCH PSPAAETPPP QHRPTVRAAI 201 250 ENSP00000201647/1-723 STVERGAGRG RPQAKP---I PEAEEAQRPE PVGTSSNADS ASPDLGPRGP ENSBTAP00000012517/1-751 HTVQPAAGRG RPQAEP---I PEAEETCRPS REEVCPSSDP ASPDLGPRGP ENSTTRP00000014829/1-720 NTVEPATGRG RPQADP---I PETAEMRRPG RAEVCSSADP TSRDLGPCGP bmy_16799T0/1-735 NTVEPAAGRG RPQADP---I PETEEMRRPG RAEVCSSADP ASRDLGPRGP BACU009057/1-778 NTAEPAAGRG RPQADPTPAI PETEEMRRPG RAEVCSSADP ASRDLGPRGP 251 300 ENSP00000201647/1-723 DLAVLQAERE VDILNHVFDD VESFVSRLQK SAEAARVLEH RERGRRSRRR ENSBTAP00000012517/1-751 DLASLQAERE VDILNHVFDD VESFVSRLQK SAEATRVLEQ RERSRRTRHQ ENSTTRP00000014829/1-720 DLASLQAERE VDILNHVFDD VETFVSRLQK SAEATRVLEH RERSRRTRHR bmy_16799T0/1-735 DLASLQAERE VDILNHVFDD VETFVSRLQK SAEATRVLEH RERSRRTRHR BACU009057/1-778 DLASLQAERE VDILNHVFDD VETFVSRLQK SAEATRVLEH RERSRRTRHR 301 350 ENSP00000201647/1-723 AAG------- ---------- ---------- ---------- ---------- ENSBTAP00000012517/1-751 EAG------- ---------- ---------- ---------- ---------- ENSTTRP00000014829/1-720 EAG------- ---------- ---------- ---------- ---------- bmy_16799T0/1-735 EAGGEEAPPS GNPEHPLPGH SQISTLSLGS PLAPPASLTP YRDLTGSLPL BACU009057/1-778 EAG------- ---------- ---------- ---------- ---------- 351 400 ENSP00000201647/1-723 ---------- ---------- -EGLLTLRAK PPSEAEYTDV LQKIKYAFSL ENSBTAP00000012517/1-751 ---------- ---------- -ESLLALRAK PPSGAEYTDV LQKIKYAFSL ENSTTRP00000014829/1-720 ---------- ---------- -EGLLTLRAK PPSEAEFIDV LQKIKYAFSL bmy_16799T0/1-735 SSTLPDAVCM SPITAPASLP TEGLLTLRAK PPSEAEFIDV LQKIKYAFSL BACU009057/1-778 ---------- ---------- -EGLLTLRAK PPSEAECIDV LQKIKYAFSL 401 450 ENSP00000201647/1-723 LARLRGNIAD PSSPELLHFL FGPLQMIVNT SGGPEFASSV RRPHLTSDAV ENSBTAP00000012517/1-751 LARLRGNIAN PTSQELLHFL FGPLQMIIDT LGGPQLASGV RRPHLTSEAV ENSTTRP00000014829/1-720 LARLRSNIAN PSSPELLHFL FGPLQMIVDA SGGPQFASCV RRPHLTSEAV bmy_16799T0/1-735 LARLRGNIAN PSSPELLHFL FGPLQMIVDT SGGPQFASCV RRPHLTSEAV BACU009057/1-778 LGRLRGNIAN PSSPELLHFL FGPLQMIVDT LGGPQFASCV RRPHLTSEAV 451 500 ENSP00000201647/1-723 ALLRDNVTPR ENELWTSLGD SWTRPGLELS PEEGPPYRPE FFSGWEPPVT ENSBTAP00000012517/1-751 KLLRENVTQR ENTLWTSLGD SWTHPGVDLP PEEGPPYRPE FYSAWEPPAM ENSTTRP00000014829/1-720 ALLWDNVTQL ENTLWTSLGD SWTRPGIELP SEEGPPYRPE FYSGWEPTAT bmy_16799T0/1-735 ALLWDNVTQL ENTLWTSLGD SWTRPGMELP SEEGPPYRPE FYSGWEPPAT BACU009057/1-778 ALLWDNVTQL ENTLWTSLGD SWTRPGMELP SEEGPPYRPE FYSGWEPPAT 501 550 ENSP00000201647/1-723 DPQSRAWEDP VEKQLQHERR RRQQ----SA PQVAVNG--- ---------- ENSBTAP00000012517/1-751 DPQGRAWEDP VEKQLQHERR RQQQ----SA PQVAVNG--- ---------- ENSTTRP00000014829/1-720 DPQGRAWEDP VEKQLQHERR RRQQ----ST PQVAVNG--- ---------- bmy_16799T0/1-735 DPQGRAWEDP VEKQLQHERR RQQVRLRLKL PQVTQRGRDW EFWGAGLAPA BACU009057/1-778 DPQGRAWEDP VEKQLQHERR RQQV--GLIW AKVPFTGLS- ELKVCSPSPQ 551 600 ENSP00000201647/1-723 ---------- HRDL----EP ESEPQLESET AGKWVLCNYD FQARNSSELS ENSBTAP00000012517/1-751 ---------- HPDE----EP EAEPQ-GPEP AGKWVLCNYD FQARNSSELS ENSTTRP00000014829/1-720 ---------- HQDQ----EP EAEPQ-GLEP AGKWVLCNYD FQARNSSELS bmy_16799T0/1-735 HLLLSSPAAK RSSGRCQWEP ETEPQ-GLEP AGKWVLCNYD FQARNSSELP BACU009057/1-778 LPGLADPPSR HQDQ----EP EAEPQ-GLEP AGKWVLCNYD FQARNSSELP 601 650 ENSP00000201647/1-723 VKQRDVLEVL DDSRKWWKVR DPAGQEGYVP YNILTPYPGP RLHHSQSPAR ENSBTAP00000012517/1-751 VKEWDILEVL DDQRKWWKVQ DQRGQEGYVP YNILTPHPGP R--GGRSLEN ENSTTRP00000014829/1-720 VKQWDILEVL DDQRKWWKVR DQRGQEGYVP YNILTPHPGP R--GGRSL-N bmy_16799T0/1-735 VKQWDILEVL DDQRKWWKVR DQRGQEGY-- ---------- --------ES BACU009057/1-778 VKQWDILEVL DDQRKWWKVR DQRGQEGYVP YNILTPHPGP R--GGRSLES 651 700 ENSP00000201647/1-723 SLNSTPPPP- ---------- ---------- -----PAPAP APPPALARPR ENSBTAP00000012517/1-751 STAVPPPPPA PAPGLAPPAP PASASAPAPP PPPLLPA-AP ALAPGLAQTQ ENSTTRP00000014829/1-720 STPSPPPPP- ---------- ---------- ----MSAPAP APPPAPARPR bmy_16799T0/1-735 STPFPPPPP- ---------- ---------- ----APALAP APGPRPARTQ BACU009057/1-778 STPFPPPPPV SAPAPAPPPP PAPAVAPALP PPPASPALAP APGPRPARTQ 701 750 ENSP00000201647/1-723 WDRPRW---- -DSCDSLNGL DPSEKEKFSQ --MLIVNEEL QARLAQGRSG ENSBTAP00000012517/1-751 GPAPASARSP RDSCENLNNL DSGKKEKFSP MLMLSINKEL QARLAQGLTG ENSTTRP00000014829/1-720 GPRLRR---- -DSCESLNNL DSGNKEKFSQ --MLSINEEL QARLAQGLTG bmy_16799T0/1-735 APAPSR---- ---------- ---------- ---------- ---------- BACU009057/1-778 APAPSRSRSP RDSCESLNNL DSSKKEKFSQ --MLSINEEL QARLAQGLVG 751 800 ENSP00000201647/1-723 PSRAVPGPRA PEPQLSPGSD ASEVRAWLQA KGFSSGTVDA LGVLTGAQLF ENSBTAP00000012517/1-751 PSRAAPGPRA PESQLSPHSS ASEVCAWLQA KGFSSGTIAA LGELSGAQLF ENSTTRP00000014829/1-720 PSRAAPGPRA PEPQLSPRSN ALEVRAWLQG KGFSSGXXXX XXXXXXXXXX bmy_16799T0/1-735 --RAAPGPRT PEPQLSPRSN ASEVRAWLQG KGFSSGTVAA LGALSGAQLF BACU009057/1-778 PSRAAPGPRT PEPQLSPRSN ASEVRAWLQG KGFSSGTVAA LGALSGAQLF 801 850 ENSP00000201647/1-723 SLQKEELRAV SPEEGARVYS QVTVQRSLLE DKEKVSELEA VMEKQKKKVE ENSBTAP00000012517/1-751 SLPKEKFRAL SPEEGARVYS QITVQRSLLE DKENVSELEA VMKKQKKRME ENSTTRP00000014829/1-720 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX DKEKVSELEA VMKKQKKRME bmy_16799T0/1-735 SMQKEKFRAL SPEEGARVYS QITVQRSLLE DKEKVSELEA VMKKQKKRME BACU009057/1-778 SLQKEKFRAL SPEEGARVYS QITVQRSLLE DKEKVSELEA VMKKQKKRLE 851 900 ENSP00000201647/1-723 GEVEMEVI- ENSBTAP00000012517/1-751 NEIETEVF- ENSTTRP00000014829/1-720 DEVETEVID bmy_16799T0/1-735 EEVETEVI- BACU009057/1-778 DEVETEVI-