KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:14 2014 Check: 00 .. Name: ENSTTRP00000000489/1-683 Len: 683 Check: 3014 Weight: 1.00 Name: ENSP00000416330/1-683 Len: 683 Check: 3775 Weight: 1.00 Name: BACU004088/1-666 Len: 683 Check: 33 Weight: 1.00 Name: bmy_03832T0/1-651 Len: 683 Check: 2105 Weight: 1.00 Name: ENSBTAP00000012519/1-661 Len: 683 Check: 5822 Weight: 1.00 // 1 50 ENSTTRP00000000489/1-683 MALLGQLLPL ALALALGPAA TPASPAKSPY QLVLQHSRLR GRQHGPNVCA ENSP00000416330/1-683 MALFVRLLAL ALALALGPAA TLAGPAKSPY QLVLQHSRLR GRQHGPNVCA BACU004088/1-666 ----MNVLVT QEDPRGGKDV EVGGHAD--- ----HLANTA AFVFSPNVCA bmy_03832T0/1-651 MALLGRLLPL ALALALGPGA TPASPAKSPY QLVLQHSRLR GRQHGPNVCA ENSBTAP00000012519/1-661 ---------- ---------- --AGPGRAPY QLVLQHSRLR GRQHGPNVCA 51 100 ENSTTRP00000000489/1-683 VQKVIGTNKK YFTNCKQWYQ RKICGKSTXX XXXXXXXXXX XXXXXXXXXX ENSP00000416330/1-683 VQKVIGTNRK YFTNCKQWYQ RKICGKSTVI SYECCPGYEK VPGEKGCPAA BACU004088/1-666 VQKVIGTNKK YFTNCKQWYQ RKICGKSTVI SYECCPGYEK VPGEKGCPAA bmy_03832T0/1-651 VQKLIGTNKK YFTNCKQWYQ RKICGKSTVI SYECCPGYEK VPGEKGCPAA ENSBTAP00000012519/1-661 VQKLIGTNKK YFTNCKQWYQ RKICGKSTVI SYECCPGYEK VPGEKGCPAA 101 150 ENSTTRP00000000489/1-683 LPLSNLYETL GVVGATTSQL YTDRTEKLRP EMEGPGSFTI FAPSNEAWAS ENSP00000416330/1-683 LPLSNLYETL GVVGSTTTQL YTDRTEKLRP EMEGPGSFTI FAPSNEAWAS BACU004088/1-666 LPLSNLYETL GVVGATTTQL YTDRTEKLRP EMEGPGSFTI FAPSNEAWAS bmy_03832T0/1-651 LPLSNLYETL GVVGATTTQL YTDRTEKLRP EMEGPGSFTI FAPSNEAWAS ENSBTAP00000012519/1-661 LPLSNLYETL GVVGATTTQL YTDRTEKLRP EMEGPGSFTI FAPSNEAWSS 151 200 ENSTTRP00000000489/1-683 LPAEVLDSLV SNVNIELLNA LRYHMVDRRV LTDELKHGMA LTSMYQNSNI ENSP00000416330/1-683 LPAEVLDSLV SNVNIELLNA LRYHMVGRRV LTDELKHGMT LTSMYQNSNI BACU004088/1-666 LPAEVLDSLV SNVNIELLNA LRYHMVDRRV LTDELKHGMA LTSMYQNSNI bmy_03832T0/1-651 LPAEVLDSLV SNVNIELLNA LRYHMVDRRV LTDELKHGMA LTSMYQNSNI ENSBTAP00000012519/1-661 LPAEVLDSLV SNVNIELLNA LRYHMVDRRV LTDELKHGMA LTSMYQNSNI 201 250 ENSTTRP00000000489/1-683 QIHHYPNGIV TVNCARLLKA DHHATNGVVH LIDKVISTIS NNIQQIIEIE ENSP00000416330/1-683 QIHHYPNGIV TVNCARLLKA DHHATNGVVH LIDKVISTIT NNIQQIIEIE BACU004088/1-666 QIHHYPNGIV TVNCARLLKA DHHATNGVVH LIDKVISTIS NNIQQIIEIE bmy_03832T0/1-651 QIHHYPNGIV TVNCARLLKA DHHATNGVVH LIDKVISTIS NNIQQIIEIE ENSBTAP00000012519/1-661 QIHHYPNGIV TVNCARLLKA DHHATNGVVH LIDKVISTVT NNIQQIIEIE 251 300 ENSTTRP00000000489/1-683 DTFETLRAAV AASGLNTLLE GDGQYTLLAP TNEAFEKIPA ETLNRILGDP ENSP00000416330/1-683 DTFETLRAAV AASGLNTMLE GNGQYTLLAP TNEAFEKIPS ETLNRILGDP BACU004088/1-666 DTFETLRAAV AASGLNTLLE GDGQYTLLAP TNEAFEKIPA ETLNRILGDP bmy_03832T0/1-651 DTFETLRAAV AASGLNTLLE GDGQYTLLAP TNEAFEKIPA ETLNRILGDP ENSBTAP00000012519/1-661 DTFETLRAAV AASGLNTLLE GDGQYTLLAP TNEAFEKIPA ETLNRILGDP 301 350 ENSTTRP00000000489/1-683 QALRDLLNNH ILKSAMCAEA IVAGLSLETL GGTTLEVGCS GDMLTIDGKP ENSP00000416330/1-683 EALRDLLNNH ILKSAMCAEA IVAGLSVETL EGTTLEVGCS GDMLTINGKA BACU004088/1-666 EALRDLLNNH ILKSAMCAEA IVAGLSLETL EGTTLEVGCS GDTLTINGKP bmy_03832T0/1-651 EALRDLLNNH ILKSAMCAEA IVAGLSLETL EGTTLEVGCS GDTLTINGKP ENSBTAP00000012519/1-661 EALRDLLNNH ILKSAMCAEA IVAGLSLETL EGTTLEVGCS GDMLTINGKP 351 400 ENSTTRP00000000489/1-683 IISNKDVVAT NGVIHFIDEL LIPDSAKTLF ELAAESDVST AVDLFRQAGL ENSP00000416330/1-683 IISNKDILAT NGVIHYIDEL LIPDSAKTLF ELAAESDVST AIDLFRQAGL BACU004088/1-666 IISNKDVLAT NGVIHFIDEL LIPDSAKTLF ELAAESDVST AVDLFRQAGL bmy_03832T0/1-651 IISNKDVLAT NGVIHFIDEL LIPDSAKTLF ELAAESDVST AVDLFRQAGL ENSBTAP00000012519/1-661 IISNKDVLAT NGVIHFIDEL LIPDSAKTLF ELAADSDVST AIDLFRQAGL 401 450 ENSTTRP00000000489/1-683 GTHLSGTERL TLLAPMNSVF KDGTPPIDAR LKNLLLNHMI KDQLASKYLY ENSP00000416330/1-683 GNHLSGSERL TLLAPLNSVF KDGTPPIDAH TRNLLRNHII KDQLASKYLY BACU004088/1-666 GTHLSGTERL TLLAPMNSVF KDGTPPIDAR TKNLLLNHMI KDQLASKYLY bmy_03832T0/1-651 GTHLSGTERL TLLAPMNSVF KDGTPPIDAR TKNLLLNHMI KDQLASKYLY ENSBTAP00000012519/1-661 SSHLSGNERL TLLAPMNSVF KDGTPPINAR TKNLLLNHMI KDQLASKYLY 451 500 ENSTTRP00000000489/1-683 HGQILETLGG KKLRVFVYRN SLCIENSCIA AHDKRGRYGT LFTMDRVLTP ENSP00000416330/1-683 HGQTLETLGG KKLRVFVYRN SLCIENSCIA AHDKRGRYGT LFTMDRVLTP BACU004088/1-666 HGQILETLGG KKLRVFVYRN SLCIENSCIA AHDKRGRYGT LFTMDRVLTP bmy_03832T0/1-651 HGQILETLGG KKLRVFVYRN SLCIENSCIA AHDKRGRYGT LFTMDRVLTP ENSBTAP00000012519/1-661 HGQTLDTLGG RKLRVFVYRN SLCIENSCIA AHDKRGRYGT LFTMDRMLTP 501 550 ENSTTRP00000000489/1-683 PVGTVMDVLK GDSRFSMLVA AIQSAGLTET LNREGAYTVF APTNEAFRAL ENSP00000416330/1-683 PMGTVMDVLK GDNRFSMLVA AIQSAGLTET LNREGVYTVF APTNEAFRAL BACU004088/1-666 PVGTVMDVLK GDSRFSMLVA AIQSAGLTEA LNREGVYTVF APTNEAFQAL bmy_03832T0/1-651 PVGTVMDVLK GDSRFRI--- ---------- ---------- ---NSAFFSH ENSBTAP00000012519/1-661 PMGTVMDVLK GDNRFSMLVA AIQSAGLTET LNREGVYTVF APTNEAFQAL 551 600 ENSTTRP00000000489/1-683 PPGELNKLLG NAKELANILK YHVGDEILVS GGIGALVRLK SLQGDKLEVS ENSP00000416330/1-683 PPRERSRLLG DAKELANILK YHIGDEILVS GGIGALVRLK SLQGDKLEVS BACU004088/1-666 PPGELNKLLG NAKELANILK YHVGDEILVS GGIGALVRLK SLQGDKLEVS bmy_03832T0/1-651 KPA------G NAKELANILK YHVGDEILVS GGIGALVRLK SLQGDKLEVS ENSBTAP00000012519/1-661 PRGELNKLMG NAKELANILK YHVGDEILVS GGIGALVRLK SLQGDKLEVS 601 650 ENSTTRP00000000489/1-683 SKNNVVNVNK EPVTEVDIMA TNGVVHAISS VLQPPANRPQ ERGDELADSA ENSP00000416330/1-683 LKNNVVSVNK EPVAEPDIMA TNGVVHVITN VLQPPANRPQ ERGDELADSA BACU004088/1-666 SKNNMVNVNK EPVTEVDIMA TNGVVHVISS VLQPPANRPQ ERGDELADSA bmy_03832T0/1-651 SKNNVVNVNK EPVTEVDIMA TNGVVHVISS VLQPPANRPQ ERGDELADSA ENSBTAP00000012519/1-661 SKNNVVSVNK EPVAEVDIMA TNGVVHAISS VLQPPANRPQ ERGDELADSA 651 700 ENSTTRP00000000489/1-683 LEIFRQASAF SRPEQPWVLC SPVYQRLLER MKH ENSP00000416330/1-683 LEIFKQASAF SRASQRSVRL APVYQKLLER MKH BACU004088/1-666 LDIFKQASAF SRATQSSVKL DK------NT MVQ bmy_03832T0/1-651 LEIFKQASAF SRATQSSVKL APVYQRLLER MKH ENSBTAP00000012519/1-661 LEIFKQASAF SRATQSSVKL APVYQRLLER MKH