KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:16 2014 Check: 00 .. Name: ENSP00000302232/1-286 Len: 293 Check: 4741 Weight: 1.00 Name: ENSBTAP00000012522/1-286 Len: 293 Check: 1676 Weight: 1.00 Name: bmy_10487T0/1-235 Len: 293 Check: 1912 Weight: 1.00 Name: BACU008927/1-281 Len: 293 Check: 7362 Weight: 1.00 Name: ENSTTRP00000004811/1-285 Len: 293 Check: 3620 Weight: 1.00 // 1 50 ENSP00000302232/1-286 MEEKRRRARV QGAWAAPVKS QAIAQPA--- ----TTAKSH LHQKPGQTWK ENSBTAP00000012522/1-286 MEDKRRRARV QGAWAGPAKS QATAQPA--- ----PTAENN LQQRPGKAWM bmy_10487T0/1-235 MEDKRRRARV QGAWAGPAKS QAIAQPGKNL WGSPPTAENP LQQRPGQTWM BACU008927/1-281 MEDKRRRARV QGAWAGPAKS QAIAQPA--- ----PTAENH LQQRPGQTWM ENSTTRP00000004811/1-285 MEDKRRRARV QGAWAGHAKS QAIAQPA--- ----PTAENH LQQRPGQTWM 51 100 ENSP00000302232/1-286 NKEHHLSDRE FVFKEPQQVV RRAPEPRVID REGVYEISLS PTGVSRVCLY ENSBTAP00000012522/1-286 NKEQHLSDRQ FVFKEPQEGV RRAPEPRVIE KEGVYEISMS PTGISRVCLC bmy_10487T0/1-235 NKEHRLSDRQ FVFREPQEVV RRAPEPRVID KEGVYEISLS PTGISRVCLY BACU008927/1-281 NKEHRLSDRQ FVFREPQEVV RRAPEPQVID KEGVYEISLS PTGISRVCLY ENSTTRP00000004811/1-285 NKEHRLSDRQ FVFKEPQEVV RRAPEPQVID KEGVYEISLS PTGVSRVCLY 101 150 ENSP00000302232/1-286 PGFVDVKEAD WILEQLCQDV PWKQRTGIRE DITYQQPRLT AWYGELPYTY ENSBTAP00000012522/1-286 PGFVDLKEAD SVFEQLCRDV PWKQRTGIRD DVTYQQPRLT AWYGELPYTY bmy_10487T0/1-235 PGFVDLKEAD SVFEQLCQDV PWKQRTGIRE DVTYQQPRLT AWYGELPYTY BACU008927/1-281 PGFVDLKEAD SVFEQLCQDV PWKQRTGIRE DVTYQQPRLT AWYGELPYTY ENSTTRP00000004811/1-285 PGFVDLKEAD SVFEQLCQDV PWKQRTGIRE DVTYQQPRLT AWYGELPYTY 151 200 ENSP00000302232/1-286 SRITMEPNPH WHPVLRTLKN RIEENTGHTF NSLLCNLYRN EKDSVDWHSD ENSBTAP00000012522/1-286 SRITMEPNPH WHPVLLMLKN QIEENTGHSF NSLLCNLYRN EKDSVDWHSD bmy_10487T0/1-235 SRLTLEPNPH WHPVLLVLKN QIEENSGHTF NSLLCNLYRN EKDGVDWHSD BACU008927/1-281 SRLTLEPNPH WHPVLLVLKN QIEENTGHTF NSLLCNLYRN EKDGVDWHSD ENSTTRP00000004811/1-285 SRITLEPNPH WHPVLLMLKN QIEENTGHTF NSLLCNLYRN EKDSVDWHSD 201 250 ENSP00000302232/1-286 DEPSLGRCPI IASLSFGATR TFEMRKKPPP EENGDYTYVE RVKIPLDHGT ENSBTAP00000012522/1-286 DEPSLGRCPI IASLSFGATR MFEMRKKPPP EDNGDYTYVE RVKIPLDHGT bmy_10487T0/1-235 DEPSLGRCPI IASLSFGATR MFEMRKKPPP LNLNE----- ---------- BACU008927/1-281 DEPSLGRCPI IASLSFGATR MFEMRKKPPP EEHGDYTYVD RVKIPLDHGT ENSTTRP00000004811/1-285 DEPSLGRCPI IASLSFGATR MFEMRKKPPP EENGDYTYVD RVKLPLAHGT 251 300 ENSP00000302232/1-286 LLIMEGATQA DWQHRVPKEY HSREPRVNLT FRTVYPDPRG APW ENSBTAP00000012522/1-286 LLIMEGATQA DWQHRVPKEY HSREPRINLT FRTVYPDPRG AHW bmy_10487T0/1-235 ---------- ---------- ---------- ---------- --- BACU008927/1-281 LLLMEGATQA DWQHRVPKEY HSREPRINLT FRTVYPDP-- --- ENSTTRP00000004811/1-285 LLLMEGATQA DWQHRVPKEY HSREPRINLT FRTVYPDP-G AHW