KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:17 2014 Check: 00 .. Name: ENSTTRP00000002998/1-271 Len: 336 Check: 8387 Weight: 1.00 Name: BACU000381/1-236 Len: 336 Check: 9947 Weight: 1.00 Name: ENSBTAP00000012534/1-323 Len: 336 Check: 7006 Weight: 1.00 Name: bmy_18833T0/1-336 Len: 336 Check: 1511 Weight: 1.00 Name: ENSP00000234831/1-323 Len: 336 Check: 6965 Weight: 1.00 // 1 50 ENSTTRP00000002998/1-271 ---------- -----VPASL ---------- ---------- ---------- BACU000381/1-236 MAAPKGSLWV RAQLGLSPLL LLLTTALTGD SGTTSAEAFD SVLGDTASCH ENSBTAP00000012534/1-323 MAVPKGSLWL RAQLGIPPLL -LLAMALAGG SGTASAEAFD SVLGDTASCH bmy_18833T0/1-336 MAAPKGSLWV RAQLGLSPLL LLLTMALTGG SGTASAEAFD SVLGDTASCH ENSP00000234831/1-323 MAAPKGSLWV RTQLGLPPLL -LLTMALAGG SGTASAEAFD SVLGDTASCH 51 100 ENSTTRP00000002998/1-271 --YTVNYTXX XXXX------ ---------- -XXXXXXXXX XXXXXXXXXX BACU000381/1-236 RACQLTYPSH TYSK------ -----EEELY ACQRGCRLFS ICQFVDDGID ENSBTAP00000012534/1-323 RACQLTYPLH TYPK------ -----EEELY ACQRGCRLFS ICQFVDDGID bmy_18833T0/1-336 RACQLTYPLH TYPKVPASLY TVNYTEEELY ACQRGCRLFS ICQFVDDGID ENSP00000234831/1-323 RACQLTYPLH TYPK------ -----EEELY ACQRGCRLFS ICQFVDDGID 101 150 ENSTTRP00000002998/1-271 XXXXXXXXXX XCTEAYSQSD EQYACHLGCQ NQLPFAELRQ EQLMSLMPKM BACU000381/1-236 LNQTKLECES ACTEAYSQSD EQYVCHLGCQ NQLPFAELRQ EQLMSLMPKM ENSBTAP00000012534/1-323 LNRTKLECES ACTEAYSQSD EQYACHLGCQ NQLPYAELRQ EQLMSLMPKM bmy_18833T0/1-336 LNRTKLECES ACTEAYSQSD EQYACHLGCQ NQLPFAELRQ EQLMSLMPKM ENSP00000234831/1-323 LNRTKLECES ACTEAYSQSD EQYACHLGCQ NQLPFAELRQ EQLMSLMPKM 151 200 ENSTTRP00000002998/1-271 HLLFPLTLVR SFWSDMMDSA QSFITSSWTF YLQADDGKIV IFQSKPEIQY BACU000381/1-236 HLVFPLTLVR SFWSDMMDCS QSFITSSWTF YLQADDGKIV IFQCKPEIQY ENSBTAP00000012534/1-323 HLLFPLTLVR SFWSDMVDSA QSFITSSWTF YLQADDGKIV IFQSKPEIQY bmy_18833T0/1-336 HLLFPLTLVR SFWSDMMDSA QSFITSSWTF YLQADDGKIV IFQSKPEIQY ENSP00000234831/1-323 HLLFPLTLVR SFWSDMMDSA QSFITSSWTF YLQADDGKIV IFQSKPEIQY 201 250 ENSTTRP00000002998/1-271 APQLEQEPTN LKEPSLSKMS Y-LHMRSSHA HRNYLEDGER DGFLRCLSLN BACU000381/1-236 APPLEQEPTS LKELSLSKMS Y-LQMRSSQA HRNYLEDGES DGFLRCLC-- ENSBTAP00000012534/1-323 APQLEQEPTN LKDSSLSKMS Y-LQMRSSQA HRNYLEDGES DGFLRCLSLN bmy_18833T0/1-336 APQLEQEPTN LKEPSLSKMS SDLHMRSSQA HRNYLEDGEH DGFLRCLSLN ENSP00000234831/1-323 APHLEQEPTN LRESSLSKMS Y-LQMRNSQA HRNFLEDGES DGFLRCLSLN 251 300 ENSTTRP00000002998/1-271 SGWILTMTLV LSVMVLLWIC CATVATAVEQ YVPSEKLSIY GDLEFVNEQK BACU000381/1-236 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012534/1-323 SGWILTVTLV LSVMVLLWIC CATVATAVEQ YVPSEKLSIY GDLEFMNEQK bmy_18833T0/1-336 SGWILTMTLV LSVMVLLWIC CATVATAVEQ YVPSEKLSIY GDLEFVNEQK ENSP00000234831/1-323 SGWILTTTLV LSVMVLLWIC CATVATAVEQ YVPSEKLSIY GDLEFMNEQK 301 350 ENSTTRP00000002998/1-271 LNRYPASSLV VVRSKGEDHE EAGPLPAKVN LAHSEI BACU000381/1-236 ---------- ---------- ---------- ------ ENSBTAP00000012534/1-323 LNRYPASSLV VVRSKAEDHE EAGPLPAKVN LAHSEI bmy_18833T0/1-336 LNRYPASSLV VVRSKGEDHE EAGPLPAKVN LAHSEI ENSP00000234831/1-323 LNRYPASSLV VVRSKTEDHE EAGPLPTKVN LAHSEI