KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:47:18 2014 Check: 00 .. Name: bmy_05518T0/1-191 Len: 275 Check: 9862 Weight: 1.00 Name: ENSP00000348074/1-241 Len: 275 Check: 5926 Weight: 1.00 Name: ENSTTRP00000005472/1-239 Len: 275 Check: 6222 Weight: 1.00 Name: ENSBTAP00000012546/1-268 Len: 275 Check: 6007 Weight: 1.00 // 1 50 bmy_05518T0/1-191 MQEEETYTSL QWDNPAPNPY QKHLSSTKNS GNQFYLFRPR PCGLWVFFFS ENSP00000348074/1-241 MHEEEIYTSL QWDSPAPDTY QKCLSSNKCS GA-CCLVMVI SCVFCMGLLT ENSTTRP00000005472/1-239 MQEEETYTSL QWDNPTPNPY QKHLSSTKNS GT-WCLVTVV LCIFCIGSLA ENSBTAP00000012546/1-268 MQEDEIYTSL QWDTPTSNPY QKHLSSTKNS GV-WCLVMVI LCIFCIGSLA 51 100 bmy_05518T0/1-191 CSVMSPRNMV SCDSGFMYLL HRLMSN---- LHFLGCQVVP GVH--YCNEA ENSP00000348074/1-241 ASIFLGVKLL QVSTIAMQQQ EKLIQQERAL LNFTEWKRSC ALQMKYCQAF ENSTTRP00000005472/1-239 TSIFLGVKLF QVSTTAMKQQ QKLIQQDRAL LNITQWKRNH GLQMKYCQML ENSBTAP00000012546/1-268 TSIFLGIKLF QMSTTIMKQQ EKLIQQERAL LNFTQWKRNP NLQMTYCQTL 101 150 bmy_05518T0/1-191 ARKTHPT--- ---------- ------GQST AQLHTMEEKP CPPD------ ENSP00000348074/1-241 MQNSLSS--- ---------- ---------- ----AHNSSP CPNNWIQNRE ENSTTRP00000005472/1-239 MQKSFSS--- ---------- ---------- ----AHNCSP CPDNWIRNGE ENSBTAP00000012546/1-268 MQKSLSSDKF YKTGETLYQS PKITPQGTQN NKQTTYNCSP CPDNWIQNGE 151 200 bmy_05518T0/1-191 ---------E ILPNVDAEVF QFSSQILITS VESKYHTLYF MDFITGSLRK ENSP00000348074/1-241 SCYYVSEIWS IWHTSQENCL KEGSTLL--Q IESKEE---- MDFITGSLRK ENSTTRP00000005472/1-239 SCYRVFESWT IWRTSREDCL KQGSKLL--Q IDSKEE---- MDFITGSLRK ENSBTAP00000012546/1-268 SCYHVFESWT FWHTSRKDCW KKGSDLL--Q IESKEE---- MDFITGSLKK 201 250 bmy_05518T0/1-191 IKRNYDHWVG LSQDGSSQPW LWQDGLSPSP D--------- ---------- ENSP00000348074/1-241 IKGSYDYWVG LSQDGHSGRW LWQDGSSPSP GLLPAERSQS ANQVCGYVKS ENSTTRP00000005472/1-239 IKRDYDYWVG LSQDGSSQPW LWQDGSSPSP D-LSIQGPQS TIQVCGYLRK ENSBTAP00000012546/1-268 IKRNYDYWVG LSQNGSNQPW LWQDGSSPSA DLLPRQGPQS TNQVCGYLRD 251 300 bmy_05518T0/1-191 ---------- ---------- ----- ENSP00000348074/1-241 NSLLSSNCST WKYFICEKYA LRSSV ENSTTRP00000005472/1-239 NSL-SPDCST WKYFICEKYA LRSST ENSBTAP00000012546/1-268 NDLSSANCSV WKYFICEKYA LRSST