KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:19 2014 Check: 00 .. Name: ENSP00000419325/1-440 Len: 581 Check: 8710 Weight: 1.00 Name: ENSTTRP00000007155/1-432 Len: 581 Check: 1941 Weight: 1.00 Name: ENSBTAP00000012551/1-432 Len: 581 Check: 7325 Weight: 1.00 Name: bmy_01249T0/1-373 Len: 581 Check: 4581 Weight: 1.00 Name: BACU015109/1-536 Len: 581 Check: 8273 Weight: 1.00 // 1 50 ENSP00000419325/1-440 ---------- -MASPVAAQA GKLLRALALR ---------- ---------- ENSTTRP00000007155/1-432 ---------- -MAAPVVAQA WKLLRDLALR ---------- ---------- ENSBTAP00000012551/1-432 ---------- -MAAPVGAQA RKLLRDLVLR ---------- ---------- bmy_01249T0/1-373 -----MKTKE SWHSRKRKKY FSGLRD---- ---------- ---------- BACU015109/1-536 MSDNGVKVQR FFVADTDNEA LEAAKRLSAK CLHLCVIYSN WAVLSLTDGA 51 100 ENSP00000419325/1-440 ---------- ---------- ----PRFLAA GSQAVQLTSR RWLNLQEYQS ENSTTRP00000007155/1-432 ---------- ---------- ----SPLLAA RSQVVHLTPR RWLNLHEYQS ENSBTAP00000012551/1-432 ---------- ---------- ----PPLLAA RSQVVQLTSR RWLNLQEYQS bmy_01249T0/1-373 ---------- ---------- ----PRKLGG GGHIAHDNCK KF-------- BACU015109/1-536 EVVTTVIGIE CSSVKKRLPQ GWNGPSISAG GGMCCVGTSL SLLMRPEVEQ 101 150 ENSP00000419325/1-440 KKLMSDNGVR VQ------RF FVADTANEAL EAAKRLNAKE IVLKAQILAG ENSTTRP00000007155/1-432 KKLMSDNGVK VQ------RF FVADTDHEAL EAAKRLNAKE IVLKAQILAG ENSBTAP00000012551/1-432 KKLMSDNGVK VQ------RF FVADTANEAL EAAKRLNAKE IVLKAQILAG bmy_01249T0/1-373 ---------- ---------- ---------- ESVLKKDAKE IVLKAQILAG BACU015109/1-536 LQMESSNEFS ARKRGGWARA THCRQQSRVS KGRRAKNAKE IVLKAQILAG 151 200 ENSP00000419325/1-440 GRGKGVFNSG LKGGVHLTKD PNVVGQLAKQ MIGYNLATKQ TPKEGVKVNK ENSTTRP00000007155/1-432 GRGKGVFSSG LKGGVHLTKX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000012551/1-432 GRGKGVFSSG LKGGVHLTKD PKVVGQLAKQ MIGYNLATKQ TPKEGVKVKK bmy_01249T0/1-373 GRGKGVFSSG LKGGVHLTKD PKVVGQLAKQ MIGYKLATKQ TPKEGVKVNK BACU015109/1-536 GRGKGVFSSG LKGGVHLTKD PKVVGQLAKQ MIGYKLATKQ TPKEGVKVNK 201 250 ENSP00000419325/1-440 VMVAEALDIS RETYLAILMD RSCNGPVLVG SPQGGVDIEE VAASNPELIF ENSTTRP00000007155/1-432 VMVAEALDIS RETYLAILMD RSCNGPVLVG SPQGGVDIEE VAASNPELIF ENSBTAP00000012551/1-432 VMVAEALDIS RETYLAILMD RSCNGPVLVG SPQGGVDIEE VAASNPELIF bmy_01249T0/1-373 VMVAEALDIS RETYLAILMD RSCNGPVLVG SPQGGVDIEE VAASNPELIF BACU015109/1-536 VMVAEALDIS RETYLAILMD RSCNGPVLVG SPQGGVDIEE VAASNPELIF 251 300 ENSP00000419325/1-440 KEQIDIFEGI KDSQAQRMAE NLGFVGPLKS Q--------- ---------- ENSTTRP00000007155/1-432 KEQIDIIEGI KDSQAQRMAE NLGFFGPLKN Q--------- ---------- ENSBTAP00000012551/1-432 KEQIDIIEGI KDSQAQRMAE NLGFLGPLKN Q--------- ---------- bmy_01249T0/1-373 KEQIDIIEGI KDSQAQRMAE NLGFFGPLKN QLRENSTYWK IGEKAPVESY BACU015109/1-536 KEQIDIIEGI KDSQAQRMAE NLGFFGPLKN Q--------- ---------- 301 350 ENSP00000419325/1-440 ---------- ---------- ------AADQ ITKLYNLFLK IDATQVEVNP ENSTTRP00000007155/1-432 ---------- ---------- ------AADQ IKKLYNLFLK IDATQVEVNP ENSBTAP00000012551/1-432 ---------- ---------- ------AADQ IKKLYNLFLK IDATQVEVNP bmy_01249T0/1-373 RFKVALNLHL LSKVGPRSSA EPWRTEAADQ IKKLYNLFLK IDATQVEVNP BACU015109/1-536 ---------- ---------- ------AADQ IKKLYNLFLK IDATQVEVNP 351 400 ENSP00000419325/1-440 FGETPEGQVV CFDAKINFDD NAEFRQKDIF AMDDKSENEP IENEAAKYDL ENSTTRP00000007155/1-432 FGETPEGQVV CFDAKINFDD NAEFRQKDIF AMDDKSENEP IENEAAKYDL ENSBTAP00000012551/1-432 FGETPEGQVV CFDAKINFDD NAEFRQKDIF AMDDKSENEP IENEAARYDL bmy_01249T0/1-373 FGETPEGQVV CFDAKINFDD NAEFRQKDIF AMDDKSENEP IENEAAKYDL BACU015109/1-536 FGETPEGQVV CFDAKINFDD NAEFRQKDIF AMDDKSENEP IENEAAKYDL 401 450 ENSP00000419325/1-440 KYIGLDGNIA CFVNGAGLAM ATCDIIFLNG GKPANFLDLG GGVKEAQVYQ ENSTTRP00000007155/1-432 KYIGLDGNIA CFVNGAGLAM ATCDIIFLNG GKPANFLDLG GGVKESQVYQ ENSBTAP00000012551/1-432 KYIGLDGNIA CFVNGAGLAM ATCDIIFLNG GKPANFLDLG GGVKESQVYQ bmy_01249T0/1-373 KYIGLDGNIA CFVNGAGLAM ATCDIIFLNG GKPANFLDLG GGVKESQVYQ BACU015109/1-536 KYIGLDGNIA CFVNGAGLAM ATCDIIFLNG GKPANFLDLG GGVKESQVYQ 451 500 ENSP00000419325/1-440 AFKLLTADPK VEAILVNIFG GIVN------ --CAII---- ---------- ENSTTRP00000007155/1-432 AFKLLTADPK VEAILVNIFG GIVN------ --CAII---- ---------- ENSBTAP00000012551/1-432 AFKLLTADPK VEAILVNIFG GIVN------ --CAII---- ---------- bmy_01249T0/1-373 AFKLLTADPK L--------- ---------- ---------- ---------- BACU015109/1-536 AFKLLTADPK DSSPIPCDLG NAIKFSASSK ALCPCLDPLF FPPAHGGSLL 501 550 ENSP00000419325/1-440 ---------- ---ANGITKA CRELELKVPL VVRLEGTFME KKGSYMHIKQ ENSTTRP00000007155/1-432 ---------- ---ANGITRA CRELELKVPL VVRLEGTNVH EAQNILSNSG ENSBTAP00000012551/1-432 ---------- ---ANGITKA CRELELKVPL VVRLEGTNVH EAQNILSNSG bmy_01249T0/1-373 ---------- -----GLR-- ---------- ---------- ---------- BACU015109/1-536 RAYLENEMVL EKGVVGLKEV CCLHSICIWY PSPVAHLVVD ATLVSMEMHG 551 600 ENSP00000419325/1-440 ETGNSNENIT GIQENVAHQN LSKCAISIFL C ENSTTRP00000007155/1-432 LPITSAADLE DAAKKAVASV AEK------- - ENSBTAP00000012551/1-432 LPITSAVDLE DAAKKAVASV AKK------- - bmy_01249T0/1-373 ---------- ---------- ---------- - BACU015109/1-536 DFPAADVENH TWRSKTIVYN SEALAFTISS I