KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:47:22 2014 Check: 00 .. Name: ENSP00000395650/1-859 Len: 871 Check: 7141 Weight: 1.00 Name: ENSBTAP00000012586/1-695 Len: 871 Check: 2746 Weight: 1.00 Name: ENSTTRP00000014912/1-739 Len: 871 Check: 408 Weight: 1.00 Name: bmy_16836T0/1-708 Len: 871 Check: 3171 Weight: 1.00 // 1 50 ENSP00000395650/1-859 -MAQVLHVPA PF----PGTP GPASPPAFPA KDPDPPYSVE TPYGYRLDLD ENSBTAP00000012586/1-695 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014912/1-739 -MAQVLHVPA PF----PGTP GPASPPTFPS KEPDLPYSVE TPYGYRLDLD bmy_16836T0/1-708 MCGQTIPNSG LHHTLSPGTP GPASPPTFPS KEPDLPYSVE TPYGYRLDLD 51 100 ENSP00000395650/1-859 FLKYVDDIEK GHTLRRVAVQ RRPRLSSLPR GPGSWWTSTE SLCSNASGDS ENSBTAP00000012586/1-695 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014912/1-739 FLKYVDDIEK GHTLRRVAVQ RRPRLGSLPR GPGSWWTSTE SLCSNASGDS bmy_16836T0/1-708 FLKYVDDIEK GHTLRRVAVQ RRPRLGSLPR GPGSWWTSTE SLCSNASGDS 101 150 ENSP00000395650/1-859 RHSAYSYCGR GFYPQYGALE TRGGFNPRVE RTLLDARRRL EDQAATPTGL ENSBTAP00000012586/1-695 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014912/1-739 RHSAYSYCGR GFYPQYGALE TRAGFNPRVE RTLLDARRRL EDQAAAPTGL bmy_16836T0/1-708 RHSAYSYCGR GFYPQYGALE TRAGFNPRVE RTLLDARRRL EDQAAAPTGL 151 200 ENSP00000395650/1-859 GSLTPSAAGS TASLVGVGLP PPTPRSSGLS TPVPPSAGHL AHVREQMAGA ENSBTAP00000012586/1-695 ---------- --------LP PPTPMTSGAS TPVPPSAGHL AHVREQMAGA ENSTTRP00000014912/1-739 GSLTPSVAGS TSSLVGVGLP PPTPRGSGLS TPVPPSAGHL AHVREQMAGA bmy_16836T0/1-708 GSLTPSVAGS TSSLVGVGLP PPTPRGSGLS TPVPPSAGHL AHVREQMAGA 201 250 ENSP00000395650/1-859 LRKLRQLEEQ VKLIPVLQVK LSVLQEEKRQ LTVQLKSQKF LGHPTAGRGR ENSBTAP00000012586/1-695 LRKLRQLEEQ VKLIPVLQVK LSVLQEEKRQ LTVQLKSQKF LGHPAGARGR ENSTTRP00000014912/1-739 LRKLRQLEEQ VKLIPVLQVK LSVLQEEKRQ LTVQLKSQKF LGHPAGARGR bmy_16836T0/1-708 LRKLRQLEEQ VKLIPVLQVK LSVLQEEKRQ LTVQLKSQKF LGHPAGARGR 251 300 ENSP00000395650/1-859 SELCLDLPDP PEDPVALETR SVGTWVRERD LGMPDGEAAL AAKVAVLETQ ENSBTAP00000012586/1-695 GELCLDLPEA PEDPVTLETR SVGTWVRERD LGMPDGEAAL AAKVAVLETQ ENSTTRP00000014912/1-739 SELCLDLPEP PEDPAVLETR SVGTWVRERD LGMPDGEAAL AAKVAVLETQ bmy_16836T0/1-708 SELCLDLPET PEDPVVLETR SVGTWVRERD LGMPDGEAAL AAKVAVLETQ 301 350 ENSP00000395650/1-859 LKKALQELQA AQARQADPQP QAWPPPDSPV RVDTVRVVEG PREVEVVAST ENSBTAP00000012586/1-695 LKKALQELQA AQARQADLPP QAWPPPDSPV RVDTVRVVQG PREVEVAAST ENSTTRP00000014912/1-739 LKKALQELQA AQARQADLQP QAWPPPDSPV RVDTVRVVEG PREVEVAAST bmy_16836T0/1-708 LKKALQELQA AQARQADLQP QAWPPPDSPV RVDTVRVVEG PREVEVAAST 351 400 ENSP00000395650/1-859 AAGAPAQRAQ SLEPYGTGLR ALAMPGRPES PPVFRSQEVV ETMCPVPAAA ENSBTAP00000012586/1-695 AAGAPAQRAQ SLEPYGAGLR ALATSNGAES PPVFRSHEVM ETVFPAPTAS ENSTTRP00000014912/1-739 AAGAPAQRAQ SLEPYGAGLR ALATSGGAES PPVFRSQEVV ETVFPTPPAS bmy_16836T0/1-708 AAGAPAQRAQ SLEPYGAGLR ALATSGGAES PPVFRSHEVV ETVFPTPPAS 401 450 ENSP00000395650/1-859 TSNVHMVKKI SITERSCDGA AGLPEVPAES SSSPPGSEVA SLTQPEKSTG ENSBTAP00000012586/1-695 TSNVHQVKKI SITERSCDGA AGHPQAPAES SLSPPESEGA TQAQPEKNTG ENSTTRP00000014912/1-739 TSNVHLVKKI SITERSCDGA AGLPQAPAES SLSPPESEGD SLAQPEKNTG bmy_16836T0/1-708 TSNVHLIKKI SITERSCDGA AGLPQAPAES SLSPPESEGD SPAQPEKNTG 451 500 ENSP00000395650/1-859 RVPTQEPTH- REPTRQAASQ ES--EEAGGT APPLSSPPGG PPAGVRSIMK ENSBTAP00000012586/1-695 QVPAHDDTTI KEPIRQAACH ESEFEEAGGA --------GG AQAGLRSIMK ENSTTRP00000014912/1-739 LVPAHDATN- REPTRQAAPQ ELESEEAGGA --------GG PPAGVPSIMK bmy_16836T0/1-708 LVPAHDATN- REPTRQAAPQ ESESEEAGGA --------GG PQAGVPSITK 501 550 ENSP00000395650/1-859 RKEEVADPTA HRRSLQFVGV NGG----YES SSEDSSTAEN ISDNDSTENE ENSBTAP00000012586/1-695 QKEEPTDPEA HRRSLQFVGV NGSISPRYES SSEDSSTAEN FSDNESTENE ENSTTRP00000014912/1-739 RKEEPADPET RRRSLQFVGV NGX----XXX XXXXXXXXXX XXXXXXXXXX bmy_16836T0/1-708 RKEEPADPET HQRSLQFVGV NGS----LLA ETLFSQSEVR GIQAPPVAPV 551 600 ENSP00000395650/1-859 APEPRERVPS VAEAPQLRPA GTAAAKTSRQ ECQLSRESQH IPTAEGASGS ENSBTAP00000012586/1-695 APEPEERVPS VAEAPQLRPK ETAKAKTSRE ESQLPQESLH TPTAEGASGS ENSTTRP00000014912/1-739 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16836T0/1-708 YWKRQTWSYG VCQVDKQNRA GYSPIMLTAL ATLKTQHDIE TVLQLFRLGD 601 650 ENSP00000395650/1-859 NTEEEIRMEL SPDLISACLA LEKYLDNPNA LTERELKVAY TTVLQEWLRL ENSBTAP00000012586/1-695 SAKDEIRMEL SPDLISACLA LEKYLENPKA LTERELKVAY TTVLQEWLRL ENSTTRP00000014912/1-739 XXXXXXXMEL SPDLISACLA LEKYLENPSA LTERELKVAY TTVLQEWLRL bmy_16836T0/1-708 VNAKASQAGQ TALMLAVSHG ---------- ------RVDV VKAL-----L 651 700 ENSP00000395650/1-859 ACRSDAHPEL VRRHLVTFRA MSARLLDYVV NIADSNGNTA LHYSVSHANF ENSBTAP00000012586/1-695 ACRSDAHPEL VRRHLVTFRA MSARLLDYVV NIADSNGNTA LHYSVSHANF ENSTTRP00000014912/1-739 ACRSDAHPEL VRRHLVTFRA MSARLLNYVV NIADSNGNTA LHYSVSHANF bmy_16836T0/1-708 ACEAD----- ---------- ---------V NVQDDDGSTA LMCACEHGHK 701 750 ENSP00000395650/1-859 PVVQQLLDSG VCKVDKQNRA GYSPIMLTAL ATLKTQDDIE TVLQLFRLGN ENSBTAP00000012586/1-695 PVVQQLLDSG VCQVDKQNRA GYSPIMLTAL ATLKTQDDIQ TILQLFRLGD ENSTTRP00000014912/1-739 PVVQQLLDSG VCQVDKQNRA GYSPIMLTAL ATLKTQHDLE ---------- bmy_16836T0/1-708 EITALLLAVP SCDISITDRD G--------- ---------- ---------- 751 800 ENSP00000395650/1-859 INAKASQAGQ TALMLAVSHG RVDVVKALLA CEADVNVQDD DGSTALMCAC ENSBTAP00000012586/1-695 VNAKASQAGQ TALMLAVSHG RVDVVKALLA CEADVNVQDD DGSTALMCAC ENSTTRP00000014912/1-739 ---------- ---------- ---------- ---------- ---------- bmy_16836T0/1-708 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000395650/1-859 EHGHKEIAGL LLAVPSCDIS LTDRDGSTAL MVALDAGQSE IASMLYSRMN ENSBTAP00000012586/1-695 EHGHKEITAL LLAVPSCDIS ITDRDGSTAL MVALDAGHSE IASMLYSRMN ENSTTRP00000014912/1-739 ---------- ---------- ---------- ---------- ---------- bmy_16836T0/1-708 ---------- ---------- ------STAL MVALDAGHSE IASMLYSRMN 851 900 ENSP00000395650/1-859 IKCSFAPMSD DESPTSSSAE E ENSBTAP00000012586/1-695 IKCSFAPMSD DESPASSSAE E ENSTTRP00000014912/1-739 --TVLQLFRL GDVNARASQ- - bmy_16836T0/1-708 IKCSFAPMSD EESPASSSAE E