KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:26 2014 Check: 00 .. Name: ENSP00000355920/1-555 Len: 555 Check: 4502 Weight: 1.00 Name: ENSBTAP00000012607/1-549 Len: 555 Check: 9721 Weight: 1.00 Name: ENSTTRP00000014867/1-554 Len: 555 Check: 6453 Weight: 1.00 Name: bmy_15052T0/1-522 Len: 555 Check: 202 Weight: 1.00 Name: BACU011744/1-390 Len: 555 Check: 8122 Weight: 1.00 // 1 50 ENSP00000355920/1-555 MPTTVDDVLE HGGEFHFFQK QMFFLLALLS ATFAPIYVGI VFLGFTPDHR ENSBTAP00000012607/1-549 MP-TVDDILE HIGEFNFFQK QTFFLLCLIS AAFTPIYVGI VFLGFTPDHR ENSTTRP00000014867/1-554 MP-TMDDILE HIGEFNFFQK QTFLFLALLS AAFTPIYVGI VFLAFTPDHR bmy_15052T0/1-522 MP-TVDDILE HIGEFNFFQK QTFLLLALLS AAFTPIYVGI VFLGFTPDHR BACU011744/1-390 MR-TVDDILE HIGEFNFFQK QTFLLLALLS AAFTPIYVGI VFLGFTPDHR 51 100 ENSP00000355920/1-555 CRSPGVAELS LRCGWSPAEE LNYTVPGPGP AGEASPRQCR RYEVDWNQST ENSBTAP00000012607/1-549 CRSPGVAELS RRCGWSLAEE LNYTVPGPGP EG-----QCL RYEVDWNQST ENSTTRP00000014867/1-554 CRSPGVPELS RRCGWSLAEE LNYTVPGPGP EGQAFPRQCR RYEVDWNQSA bmy_15052T0/1-522 CRSPGVAELS RRCGWSLAEE LNYTVPGPGP EGQAFPRRCR RYEVDWNQSA BACU011744/1-390 CQSPGVAELS RRCGWSLAEE LNYT------ ---------- ---------- 101 150 ENSP00000355920/1-555 FDCVDPLASL DTNRSRLPLG PCRDGWVYET PGSSIVTEFN LVCANSWMLD ENSBTAP00000012607/1-549 LGCLDPLASL ATNGSPLPLG PCEQGWVYDT PGSSIVTEFN LVCADSWMLD ENSTTRP00000014867/1-554 LGCVDPLAGL AANSSLLPLG PCRHGWVYDT PGSSIVTEFN LVCTNSWMLD bmy_15052T0/1-522 LGCVDPLAGL AANSSLLPLG PCRHGWVYDT PGSSIVTEFN LVCTNSWMLD BACU011744/1-390 ---------- ---------- ---------- --------FN LVCTNSWMLD 151 200 ENSP00000355920/1-555 LFQSSVNVGF FIGSMSIGYI ADRFGRKLCL LTTVLINAAA GVLMAISPTY ENSBTAP00000012607/1-549 LFQSAVNVGF FIGSMSIGYI ADRFGRKLCL LITILINASS GVLMAISPNY ENSTTRP00000014867/1-554 LFQSAVNVGF FIGSVGIGYI ADRFGRKLCL LITILINASS GVLMAISPNY bmy_15052T0/1-522 LFQSAVNVGF FIGSVGIGYL ADRFGRRLCL LITILINASS GVLVAISPTY BACU011744/1-390 LFQSAVNVGF FIGSVGIGYI ADRFGRKLCL LITILINASS GVLVAISPTY 201 250 ENSP00000355920/1-555 TWMLIFRLIQ GLVSKAGWLI GYILITEFVG RRYRRTVGIF YQVAYTVGLL ENSBTAP00000012607/1-549 TWMLIFRLIQ GLVSKAGWLI GYILITEFVG LRYRRTVGIF YQVAFTIGLL ENSTTRP00000014867/1-554 TWMLIFRLIQ GLVSKAGWLI GYILITEFVG LSYRRTVGIL YQVAFTVGLL bmy_15052T0/1-522 TWMLIFRLIQ GLVSKAGWLI GYILITEFVG LSYRRTVGIF YQVAFTVGLL BACU011744/1-390 TWMLIFRLIQ GLVSKAGWLI GYILITEFVG LSYRRTVGIF YQVAFTVGLL 251 300 ENSP00000355920/1-555 VLAGVAYALP HWRWLQFTVS LPNFFFLLYY WCIPESPRWL ISQNKNAEAM ENSBTAP00000012607/1-549 VLAGVAYVLP HWRWLQFTVT LPNFCFLLYY WCVPESPRWL ISQNKNAKAM ENSTTRP00000014867/1-554 VLAGVAYVLP HWRWLQFTVT LPNFCFLLYY WCVPESPRWL ISQNKDAKAM bmy_15052T0/1-522 VLAGVAYALP HWRWLQFTVT LPNFCFLLYY WCVPESPRWL ISQNKDAKAM BACU011744/1-390 VLAGVAYALP HWRWLQFTVT LPNFCFLLYY W--------- ---------- 301 350 ENSP00000355920/1-555 RIIKHIAKKN GKSLPASLQR LRLEEETGKK LNPSFLDLVR TPQIRKHTMI ENSBTAP00000012607/1-549 KIIKHIAKKN GKPLPGSLQS LRPDEEVGEK LNPSFLDLVR TPQIRKHTLI ENSTTRP00000014867/1-554 KIIKHIAKKN GKSLPTSLQS LGSDEEVGEK LNPSFLDLVR TPQIRKHTLI bmy_15052T0/1-522 KIIKHIAKKN GKSLPASLQS LGPDEEVGEK LNPSFLDLVR TPQIRKHTLI BACU011744/1-390 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000355920/1-555 LMYNWFTSSV LYQGLIMHMG LAGDNIYLDF FYSALVEFPA AFMIILTIDR ENSBTAP00000012607/1-549 LMYNWFTSSV LYQGLIMHMG LAGSNIYLDF FYSALVEFPA AFLIILTIDR ENSTTRP00000014867/1-554 LMYNWFTSSV LYQGLIMYMG LAGSNIYLDF LYSALVEFPA ALIILVTIDR bmy_15052T0/1-522 LMYNWFTSSV LYQGLIMHMG LAGSNIYLDF LYSALVEFPA AFIILVTIDR BACU011744/1-390 -----FTSSV LYQGLIMHMG LAGSNIYLDF LYSALVEFPA AFIILVTIDR 401 450 ENSP00000355920/1-555 IGRRYPWAAS NMVAGAACLA SVFIPGDLQW LKIIISCLGR MGITMAYEIV ENSBTAP00000012607/1-549 IGRRYPWAVS NMVAGAACLV SVFIPEDLHW LRVTAACLGR MGITMAYEMV ENSTTRP00000014867/1-554 VGRRHPWAAS NMVAGAACLA SVFIPEDLRW LRVTVVCLGR MGITMAYEMV bmy_15052T0/1-522 VGRRLPWAAS NTVAGAACLA SVFIPEDLHW LRVTVACLGR MGITMAYEIV BACU011744/1-390 VGRRHPWAAS NTVAGAACLA SVFIPEDLHW LRVTVACLGR MGITMAYEMV 451 500 ENSP00000355920/1-555 CLVNAELYPT FIRNLGVHIC SSMCDIGGII TPFLVYRLTN IWLELPLMVF ENSBTAP00000012607/1-549 CLVNAELYPT FIRNLGVLVC SSMCDIGGIL TPFLVYRLTD IWHELPLVVF ENSTTRP00000014867/1-554 CLVNAELYPT CIRNLGVLVC SSMCDIGGII TPFLVYRLTS IWHELPLVVF bmy_15052T0/1-522 CLVNAELYPT FIRNLGVLVC SSMCDIGGII TPFLVYRLTN IWHELPLVVF BACU011744/1-390 CLVNAELYPT FIRNLGVLVC SSMCDIGGII TPFLVYRLTN IWHELPLVVF 501 550 ENSP00000355920/1-555 GVLGLVAGGL VLLLPETKGK ALPETIEEAE NMQRPRKNKE KMIYLQVQKL ENSBTAP00000012607/1-549 AVVGLIAGGL VLLLPETKGK TLPETIEEAE NMQRSGKNKE KMIYIEVKKL ENSTTRP00000014867/1-554 AVVGLVAGGL VLLLPETKGK TLPETIEEAE NMQRPRKNKE KMIYLQVKKL bmy_15052T0/1-522 AV-------- ---------- ---------- ----DRGTGP LLLCVHADTA BACU011744/1-390 DF-------- ---------- ------DKKK NSEKVHIHIL LAQYIGSENL 551 600 ENSP00000355920/1-555 DIPLN ENSBTAP00000012607/1-549 DTPLN ENSTTRP00000014867/1-554 DTPLN bmy_15052T0/1-522 PEPYT BACU011744/1-390 HVF--