KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:47:26 2014 Check: 00 .. Name: ENSBTAP00000012610/1-829 Len: 933 Check: 9218 Weight: 1.00 Name: ENSTTRP00000009643/1-830 Len: 933 Check: 8286 Weight: 1.00 Name: bmy_05292T0/1-879 Len: 933 Check: 9945 Weight: 1.00 Name: BACU018089/1-829 Len: 933 Check: 7200 Weight: 1.00 // 1 50 ENSBTAP00000012610/1-829 --------MV AAWLWLLCFL V--------- ---------- ---------- ENSTTRP00000009643/1-830 --------MV PAWLCLLCLF I--------- ---------- ---------- bmy_05292T0/1-879 MSLRPILTMV PARLCLLCLF IPQVSWALLL TLRSWLWLVP SPPTLPGPVA BACU018089/1-829 --------MV PAWLCLLCLF I--------- ---------- ---------- 51 100 ENSBTAP00000012610/1-829 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009643/1-830 ---------- ---------- ---------- ---------- ---------- bmy_05292T0/1-879 LTMDGSVWGM VMRAGYRPVV GSGGQRPGGA WAKVWPGPGK RQNSPSLSGS BACU018089/1-829 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000012610/1-829 ---------- ------PQAL PRAQPAELYV EVPENYGGNF PLYLTKLLLP ENSTTRP00000009643/1-830 ---------- ------PQAF PGAQPAEVYV DVPENYGGNF PLYLTKLPLP bmy_05292T0/1-879 GTHGRKVQLA DVVRILPQAF PRAQPAEVYV DVPENYGGNF PLYLTKLPLP BACU018089/1-829 ---------- ------PQAF PGAQPAEVYV DVPENYGGNF PLYLTKLPLP 151 200 ENSBTAP00000012610/1-829 REETEGQIVV SGDAGVAGEG LFAVDPESGF LLVTRALDRE EQAEYQLQVT ENSTTRP00000009643/1-830 RKETEGQIVL SGDSGVAAEG PFAVDPQSGF LLVTRALDRE EQAEYQLQVT bmy_05292T0/1-879 RKETEGQIVL SGDSGVAAEG PFAVDPESGF LLVTRALDRE EQAEYQLQVT BACU018089/1-829 RKETEGQIVL SGDSGVAAEG PFAVDPESGF LLVTRALDRE EQAEYQLQVT 201 250 ENSBTAP00000012610/1-829 LETENRRVLW GPQPVRVRVK DENDQVPHFS QATYKVHLSR GTRPGVPFFF ENSTTRP00000009643/1-830 LETEDGRVLW GPQHVLVHVK DENDQVPHFS QAIYKVQLSQ GTRPGVPFFF bmy_05292T0/1-879 LETEDGRVLW GPQHVLVHVK DENDQVPHFS QAIYKVQLSQ GTRP------ BACU018089/1-829 LETEDGRVLW GPQHVLVHVK DENDQVPHFS QAIYKVQLSQ GTRPGVPFFF 251 300 ENSBTAP00000012610/1-829 LEASDGDEPG TTNSDLRFHI LNQAPAQPAS DMFQLEPRLG ALALSPEGST ENSTTRP00000009643/1-830 LEASDGDAPG TANSDLRFHI LNQAPSQPSA DMFQLEPQLG ALALSPEGST bmy_05292T0/1-879 ---------- ---------- ---------- ---------- -------GST BACU018089/1-829 LEASDGDAPG TANSDLRFHI LNQAPSQPSA DMFQLEPQLG ALALSPEGST 301 350 ENSBTAP00000012610/1-829 SLEKALEGYY QLLVQVKDMG DQASGHQATA TIDVSIVENT WVPLDPVHLA ENSTTRP00000009643/1-830 SLDQALEGPY QLLVRVKDMG DEASGHQATA TVDVSIVENT WVPLDPVHLA bmy_05292T0/1-879 SLDQALEGPY QLLVQVKDMG DQASGHQATA TIDVSIVENT WVPLDPVHLA BACU018089/1-829 SLDQALEGPY QLLVQVKDMG DQASGHQATA TIDVSIVENT WVPLDPVHLA 351 400 ENSBTAP00000012610/1-829 ENLQVPYPHH IAQVHWNGGD VHYHLESQPQ GPFDVDTEGK LYVTQELDRE ENSTTRP00000009643/1-830 ENLQVPYPHH IAQVHWSGGD VHYHLESQPL GPFDVDKEGK LYVTRELDRE bmy_05292T0/1-879 ENLQVPYPHH IAQVHWSGGD VHYHLESQPL GPFDVDKEGK LYVTRELDRE BACU018089/1-829 ENLQVPYPHH VAQVHWSGGD VHYHLESQPL GPFDVDKEGK LYVTRELDRE 401 450 ENSBTAP00000012610/1-829 AQAEYLLQVW AQNTHSEDY- AAPLELQVVV TDENDNAPIC PPRGPSVSIP ENSTTRP00000009643/1-830 AQAEYLLQVR AQNTRGEDYP AEPLELHVVV MDENDNMPVC PPRGPAISIP bmy_05292T0/1-879 AQAEYLLRVR AQNTRGEDY- AEPLELHVVV MDENDNMPVC PPRGPAISIP BACU018089/1-829 AQAEYLLQVR AQNTRGEDY- AETLELHVVV MDENDNMPVC PPRGPAISIP 451 500 ENSBTAP00000012610/1-829 ELSPPGTKVA KISAEDADAP SSPNSHVVYQ LLSPEPEEPA ELRAFELDST ENSTTRP00000009643/1-830 ELSPPGTKVA KLSAEDADAP GSPNSHVVYR LLSPEPEEGA EGRAFELDST bmy_05292T0/1-879 ELSPPGTKVA KLSVEDADAP GSPNSHIVYQ LLSLEPEEGA EGRAFELDST BACU018089/1-829 ELSPPGTKVA KLLVEDADAP GSPNSHIVYR LLSPEPEEGA EGRAFELDST 501 550 ENSBTAP00000012610/1-829 SGSVTLGAAQ LQAGQNILLQ VLAMDLGGTD GGLSSTCEIP VTITDINDHA ENSTTRP00000009643/1-830 SGSVTLGAAP LQAGQNILLQ VLVIDLGGAE GGLSSTCEIA VTIMDINDHA bmy_05292T0/1-879 SGSVTLGAAP LQAGQNILLQ VLVTDLGGAE GGLSSTCEIA VTITDINDHA BACU018089/1-829 SGSVTLGAAP LQAGQNILLQ VLVTDLGGAE GGLSSTCEIA VTITDINDHA 551 600 ENSBTAP00000012610/1-829 PEFTTSQIEP VSLPEDAEPG TLVTTLTATD ADLEPAFRLM DFAIEAGDEE ENSTTRP00000009643/1-830 PEFTTSQIEP LSLPEDTEPG TLVTTLMATD ADLEPAFRLM DFAIEAGDVE bmy_05292T0/1-879 PEFTTSQIEP LSLPEDTEPG TLVTTLMATD ADLEPAFRLM DFAIEAGDVE BACU018089/1-829 PEFTTSQIEP LSLPEDTEPG TLVTTLMATD ADLEPAFRLM DFAIEAGDVE 601 650 ENSBTAP00000012610/1-829 GTFSLDWEPD SAHVQLRLLK NLSYEAAPSH KLVVVVRNVE ELVGPGPGPG ENSTTRP00000009643/1-830 GTFGLDWEPD SGRVQLRLLK NLSYEAAPSH KLVVVVRSVA EPVGPDPGPG bmy_05292T0/1-879 GTFGLDWEPD SGRVQLRLLK NLSYEAAPSH KLVVVVRSVA EPVGPDPGPG BACU018089/1-829 GSFGLDWEPD SGRVQLRLLK NLSYEAAPSH KLVVVVRSVA EPVGPDPGPG 651 700 ENSBTAP00000012610/1-829 ATATVTVLVE RVVPPPQLDR ESYEASVPIS TPAGSLLLTV QPSDPLSSPL ENSTTRP00000009643/1-830 ATVTVTVLVE RVTPPPQLDQ ESYQASVPVS TPAGSLLLTI RPSDPMSNPL bmy_05292T0/1-879 ATVTVTVLVE RVVPPPQLDQ ESYEASVPVS TPAGSLLLTI RPSDPMSSPL BACU018089/1-829 ATVTVTVLVE RVVPPPQLDQ ESYEASVPVS TPAGSLLLTV RPSHPMSSPL 701 750 ENSBTAP00000012610/1-829 RFSLVNDSEG WLCIKEISGE VHTARPLQGA QPGDMYTVLI EAQDADEPTL ENSTTRP00000009643/1-830 RFSLVNDSEG WLCIEEVSGE VHIARALQGA QPGDKYTVLV EAQDADEPTL bmy_05292T0/1-879 RFSLVNDSEG WLCIEEVSGE VHIARPLQGA QPGDMYTVLV EAQDADEPTL BACU018089/1-829 RFSLVNDSEG WLCIEEVSGE VHIARPLQGA QPGDMYTVLV EAQDADEPTL 751 800 ENSBTAP00000012610/1-829 STSATLVIHF LKALPAPTPT LAPVPSRHLC TPRQDHGVVV SGPREDPDRA ENSTTRP00000009643/1-830 STSATLVIHF LKAPSAPTPT VAPEPSRHLC TPRQDRGVVV GGPRGDPDLA bmy_05292T0/1-879 STSATLVIHF LKAPSAPTPT LAPVPSRHLC TPRQDRGVVV GGPRGDPDLA BACU018089/1-829 STSATLVIHF LKAPSAPTPT LAPVPSRHLC TPRQDRGVVV GGPRGDPDLA 801 850 ENSBTAP00000012610/1-829 GGHGPFSFAL GPNPTVQRDW RLRALNGSHA YLTLGLHWVE PREHVVPIAV ENSTTRP00000009643/1-830 GGHGPYSFAL GPNPTAQRDW RLRALNGSHA YLTLGLHWVE PREHVVPIVV bmy_05292T0/1-879 GGHGPYSFAL GPNPTAQRDW RLRALNGSHA YLTLGLHWVE PREHVVPIVV BACU018089/1-829 GGHGPYSFAL GPNPTAQRDW RLRALNGSHA YLTLGLHWVE PREHVVPIVV 851 900 ENSBTAP00000012610/1-829 SHNDQIWQIQ VRVIVCRCNV EGQCMRKVGR MKGMPTKLSA VGILVGTLIA ENSTTRP00000009643/1-830 SHHDRVWQIQ VRVIVCRCNV EGQCMRKVGR MKGMPTKLSA VGILVGTLIA bmy_05292T0/1-879 SHHDLVWQIQ VRVIVCRCNV EGQCMRKVGR MKGMPTKLSA VGILVGTLIA BACU018089/1-829 SHHDLVWQIQ VRVIVCRCNV EGQCMRKVGR MKGMPTKLSA VGILVGTLIA 901 950 ENSBTAP00000012610/1-829 IGIFLILIFT HLTLARKKDL DQPVDSVPLK VAV ENSTTRP00000009643/1-830 IGIFLILIFT HLTLARKKDL DQPVDSVPLK AAV bmy_05292T0/1-879 IGIFLILIFT HLTLARKKDL DQPVDSVPLK AAV BACU018089/1-829 IGIFLILIFT HLTLARKKDL DQPVDSVPLK AAV