KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:47:28 2014 Check: 00 .. Name: ENSP00000288462/1-461 Len: 484 Check: 2848 Weight: 1.00 Name: ENSBTAP00000012629/1-442 Len: 484 Check: 6938 Weight: 1.00 Name: bmy_05207T0/1-437 Len: 484 Check: 5804 Weight: 1.00 Name: ENSTTRP00000001094/1-386 Len: 484 Check: 7969 Weight: 1.00 // 1 50 ENSP00000288462/1-461 MDLPDESQWD ETTCGLAVCQ HPQCWATIRR IERGHPRILG SSCKTPLDAE ENSBTAP00000012629/1-442 MDLPDKSQWD ETTCDLAVCQ HPQCWATIRR IERGHPRLLD SSSKSFLDAE bmy_05207T0/1-437 MDLPDKSQWD ETTCDLAVCQ HPQCWATLRR IERGHPRILD SSRKSPLDAE ENSTTRP00000001094/1-386 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000288462/1-461 DKLPVLTVVD ILDSGFAAH- -----HLPEC TFTKAHSLLS QSSKFYSKFH ENSBTAP00000012629/1-442 DKLPVLTIVN IADSCFPAKR VMCRCHLPGF TFTKARSLLS --SKFDSKFE bmy_05207T0/1-437 DRLPVLTIVN IADSCFQAKR LAC-GHLSGF TFPKAHSLLS QRSKFYSRFQ ENSTTRP00000001094/1-386 -RLPVLTIVN ITDP-LAGH- -----HSSGF TFPKAHSLLS QRSKFYSKFQ 101 150 ENSP00000288462/1-461 GRPPKGLPDK SLINCTNRLP KFPVLNLNET QLPCPEDVRN MVVLWIPEET ENSBTAP00000012629/1-442 GR--KDLPDR DLMNRADRSP KLSVLNLNET KLPCPQDVGN MDVIWIPEKH bmy_05207T0/1-437 RRPWKDLPDR DLICRTNRSP KLSVLNLNEX QLPCPQDVGN MDVIWIPEKH ENSTTRP00000001094/1-386 RRPWKDLPDR DLIHRTNRSP KLSVLNLNET QLPCPQDVGN MDVIWIPEKH 151 200 ENSP00000288462/1-461 E-------IH VSQHGKKKRK NSAVKSKSFL GLSGNQSAGT RVGTPGMIVP ENSBTAP00000012629/1-442 VSPAEEKHII CSQDGNMNRN KSPGKHK--- ---------- -LELPGIMIP bmy_05207T0/1-437 TSPAEKKHII RSQDGEMKRK KSTGKHKS-- ----SRDPQT QLGPPGMIVP ENSTTRP00000001094/1-386 M--------- -SQDGEMKRK KSTGKHKS-- ----SRDTEA QLGLPGMIVP 201 250 ENSP00000288462/1-461 PPTPVQLSEQ FSSDFLPLWA QSEALPQDLL KELLPGGKQT MLCPEMKIKL ENSBTAP00000012629/1-442 PPTPAYSHEQ LSSESLPLWN QFDVLPQDLL KDLLLDKGKT ILYPEMQTQL bmy_05207T0/1-437 PPSPVHLFEH LSSECVPLWN QYDXLPQDLL KDLLLDKGKT LPYLEMQTQL ENSTTRP00000001094/1-386 PPSPVHLFEE LSSERVPLWK QYDMLPQDLL KDLLLDKGKT IPYLEMQXXX 251 300 ENSP00000288462/1-461 AMMKKNLPLE KNRPDSVISS KMFLSIHRLT LERPALRYPE RLKKLH-NLK ENSBTAP00000012629/1-442 AMMKKKSPLE KSRPDSAISA KMYLSVHRLT LQKPALRYPE HLKKHYSNLK bmy_05207T0/1-437 AMMKKKPPLE KSRPDSAIST KMYLSVHCLT PQRPALRYPE HLKKLYYNLT ENSTTRP00000001094/1-386 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXRPALRYPE HLKKLYYNLT 301 350 ENSP00000288462/1-461 TEGYRKQQQR QQQQQQQQKK VKTPIKKQEA KKKAKSDPGI QSTSHKHPVT ENSBTAP00000012629/1-442 TDGHRK---- --QQQQQQRK VKTATRKQEA KRRCKSEPGS HNTSHKHS-- bmy_05207T0/1-437 TEGYRK---- --QQQQQQGK VKTATRKQEA KKKSKSEPGS LNTSHKRSGA ENSTTRP00000001094/1-386 TEGYRK---- --QQWQQQRK VKTATGKQEA KKKSKSEPGS HNASHKRSGA 351 400 ENSP00000288462/1-461 TVHDRLYGYR TLPGQNSDMK QQQQME-KGT TSKQDSTERP KMNYYDHA-D ENSBTAP00000012629/1-442 -------GRK TLRGQESSKK QQQQMKTEGP TLKQDSTERL QTNVAKKSLD bmy_05207T0/1-437 MVYDPCCGK- ---------- ---------- --ENDSTERP QMDCTKKNLD ENSTTRP00000001094/1-386 MVYDPCCGHR TLPGRESDKK QQQQMKIEGP TSKQDSTERP QMDYEKP--D 401 450 ENSP00000288462/1-461 FHHSVKSPEL YETEPTNKDI SAPVDAVPEA QAARQKKISF NFSEIMASTG ENSBTAP00000012629/1-442 SSRSKKSPKL SQIEYTKKDI KTQMEILLED QMRSPKSAS- -------SIS bmy_05207T0/1-437 SFPG---PEF STVECTNKDI RTQMEILLET QERTPNSTS- -------RTG ENSTTRP00000001094/1-386 SFPGRQSPEL STIECANKDI RTQMEILLEA QERTPNSTS- -------RT- 451 500 ENSP00000288462/1-461 WNSELKLLRI LQDTDDEDEE DQSSGAE--- ---- ENSBTAP00000012629/1-442 WNPELKLLRI LQATDEEDEE THPSGAQSEV SEV- bmy_05207T0/1-437 WNPELKLLRI LQATDEEDEE NQPSGAQSEE SLEA ENSTTRP00000001094/1-386 WNPELKLLRI LRDTDEEDEE NQPSGAE--- ----