KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:47:29 2014 Check: 00 .. Name: ENSTTRP00000000982/1-649 Len: 729 Check: 8251 Weight: 1.00 Name: ENSP00000432869/1-721 Len: 729 Check: 1850 Weight: 1.00 Name: bmy_04101T0/1-682 Len: 729 Check: 4791 Weight: 1.00 Name: ENSBTAP00000012643/1-726 Len: 729 Check: 395 Weight: 1.00 // 1 50 ENSTTRP00000000982/1-649 MLPRGRPRAL GAAALLLLLL VIGFFLFRGD LDC------- ERSEGRRVGA ENSP00000432869/1-721 MLPRGRPRAL GAAALLLLLL LLGFLLFGGD LGC------E RREPGGRAGA bmy_04101T0/1-682 MLPRGRPRAL GAAALLLLLL LIGFLLFRGD LDC----ERT EREASGGGAG ENSBTAP00000012643/1-726 MLLRGRPRTL GAAALLLLLL L-GFFLFGGD PDCELGGERE ARRGGGGGGD 51 100 ENSTTRP00000000982/1-649 XXXXXXXXXX XXXXXXXXXX --XXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000432869/1-721 PGCFPGPLMP RVPPDGRLRR --AAALDGDP GAGPGDHNRS DCGPQPPPPP bmy_04101T0/1-682 PGSLPRSLTP RVSPDERPRP RGTAAFDGDP PADPGGRNGS DCIPPRPRPP ENSBTAP00000012643/1-726 PRSVPGSPTP RVPPDGRPRS QGAATFDGDP PADPRGHNRS DCIPPPPPPP 101 150 ENSTTRP00000000982/1-649 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XKNPLHLHLV TDAVARNILE ENSP00000432869/1-721 KCELLHVAIV CAGHNSSRDV ITLVKSMLFY RKNPLHLHLV TDAVARNILE bmy_04101T0/1-682 KCELLQVAIV CAGHNSSRDV ITLVKSMLFY RKNPLHLHLV TDAVARNILE ENSBTAP00000012643/1-726 KCELLQVAIV CAGHNSSRDV ITLVKSLLFY RKNPLHLHLV TDAVARNILE 151 200 ENSTTRP00000000982/1-649 TLFHMWMVPA VQISFYNADE LKPQVSWIPN KHYSGLYGLM KLVLPSALPP ENSP00000432869/1-721 TLFHTWMVPA VRVSFYHADQ LKPQVSWIPN KHYSGLYGLM KLVLPSALPA bmy_04101T0/1-682 TLFHTWM--- ---------- --PQVSWIPN KHYSGLYGLM KLVLPSALPP ENSBTAP00000012643/1-726 TLFHTWMVPA VQISFYNADE LKPQVSWIPN KHYSGLYGLM KLVLPSALPP 201 250 ENSTTRP00000000982/1-649 DLARVIVLDT DVTFASNIAE LWALFAHFSD KQVIGLVENQ SDWYLGNLWR ENSP00000432869/1-721 ELARVIVLDT DVTFASDISE LWALFAHFSD TQAIGLVENQ SDWYLGNLWK bmy_04101T0/1-682 DLARVIVLDT DVTFASNIAE LWALFAHFSD KQVIGLVENQ SDWYLGNLWR ENSBTAP00000012643/1-726 DLARVIVLDT DVTFASNIAE LWALFAHFSD KQAIGLVENQ SDWYLGNLWR 251 300 ENSTTRP00000000982/1-649 NHRPWPALGR GFNTGVILLR LDRLRQAGWE QMWKLTATRE LLTLPATSLA ENSP00000432869/1-721 NHRPWPALGR GFNTGVILLR LDRLRQAGWE QMWRLTARRE LLSLPATSLA bmy_04101T0/1-682 NHRPWPALGR GFNTGVILLR LDRLRQAGWE QMWKLTATRE LLTLPATSLA ENSBTAP00000012643/1-726 NHRPWPALGR GFNTGVILLR LDRLRQAGWE HMWKLTATRE LLTLPATSLA 301 350 ENSTTRP00000000982/1-649 DHDIFNAIIK EHPWLVHPLP CVWNVQLSDH TLAERCYSEA SDLKVIHWNS ENSP00000432869/1-721 DQDIFNAVIK EHPGLVQRLP CVWNVQLSDH TLAERCYSEA SDLKVIHWNS bmy_04101T0/1-682 DQDIFNAIIK EHPWLVRPLP CVWNVQLSDH TLAERCYSEA SDLKVIHWNS ENSBTAP00000012643/1-726 DQDIFNAVIK EHPWLVQPLP CMWNVQLSDH TLAERCYSEA PDLKVIHWNS 351 400 ENSTTRP00000000982/1-649 PKKLRVKNKH VESFRNLYLT FLEYDGNLLR RELFGCPRPP PPGAEQLQRA ENSP00000432869/1-721 PKKLRVKNKH VEFFRNFYLT FLEYDGNLLR RELFVCPSQP PPGAEQLQQA bmy_04101T0/1-682 PKKLRVKNKH VESFRNLYLT FLEYDGNLLR RELFGCPRPP PPGAEQLQRA ENSBTAP00000012643/1-726 PKKLHVKNKH VESFRNLYLT FLEYDGNLLR RELFGCPCPP PPGAEQLQQA 401 450 ENSTTRP00000000982/1-649 LAQLDEEDAC FEFRRQQLTV HRVHITFLPH KPPPPQPHDV TLVAQLSMDR ENSP00000432869/1-721 LAQLDEEDPC FEFRQQQLTV HRVHVTFLPH EPPPPRPHDV TLVAQLSMDR bmy_04101T0/1-682 LAQLDEEDAC FEFRRQQLTV HRVHVTFLPH KPPPPQPHDV TLVAQLSMDR ENSBTAP00000012643/1-726 LAQLEEQDAC FEFRQQQLTV HRVHITFLPH KPPPPQPHDV TLVAQLSMER 451 500 ENSTTRP00000000982/1-649 MQMLEALCRH WPGPMSLALY LTDAEAQQFL RFVETSVVLS ARQDVAYHVV ENSP00000432869/1-721 LQMLEALCRH WPGPMSLALY LTDAEAQQFL HFVEASPVLA ARQDVAYHVV bmy_04101T0/1-682 LQMLEALCRH WPGPMSLALY LTDAEAQQFL RFVETSEVLS ARQDVAYHVV ENSBTAP00000012643/1-726 LQMLEALCRH WPGPMSLALY LTDTEAQQFL RFVETSAVLS ARQDVAYHVV 501 550 ENSTTRP00000000982/1-649 YREGPLYPIN QLRNVALAQA LTPYVFLSDI DFLPAYSLYD YLRASIQQLE ENSP00000432869/1-721 YREGPLYPVN QLRNVALAQA LTPYVFLSDI DFLPAYSLYD YLRASIEQLG bmy_04101T0/1-682 YREGPLYPIN QLRNVALAQA LTSYVFLSDI DFLPAYSLYN YLRASIKQLE ENSBTAP00000012643/1-726 YREGSLYPIN QLRNVALAQA LTPYVFLSDI DFLPAYSLYD YLRASIEQLE 551 600 ENSTTRP00000000982/1-649 LGSGRKAALV VPAFETLHYR FSFPSSKAEL LALLDAGSLH TFRYHEWPRG ENSP00000432869/1-721 LGSRRKAALV VPAFETLRYR FSFPHSKVEL LALLDAGTLY TFRYHEWPRG bmy_04101T0/1-682 LGSGRKAALV VPAFETLHYR FSFPSSKAEL LALLDAGSLH TFRYHEWPRG ENSBTAP00000012643/1-726 LDGRRKAALV VPAFETLHYR FSFPSSKAEL LTLLDAGSLY TFRYHEWPQG 601 650 ENSTTRP00000000982/1-649 HAPTDYARWR EAQAPYHVQW AADYEPYVVV PRDCPRYDPR FAGFGWNKVA ENSP00000432869/1-721 HAPTDYARWR EAQAPYRVQW AANYEPYVVV PRDCPRYDPR FVGFGWNKVA bmy_04101T0/1-682 HAPTDYARWR EAQAPYHVQW AADYEPYVVV PRDCPRYDPR F--------- ENSBTAP00000012643/1-726 HAPTDYARWR EAQAPYRVQW AADYEPYVVV PRDCPRYDPR FVGFGWNKVA 651 700 ENSTTRP00000000982/1-649 HVMELDAQ-- ---------- ---------- ---------- ---------- ENSP00000432869/1-721 HIVELDAQEY ELLVLPEAFT IHLPHAPSLD ISRFRSSPTY RDCLQALKDE bmy_04101T0/1-682 ---------- -------AFV IHLPHAPSLD ISRFRSSPTY RDCLQALKDE ENSBTAP00000012643/1-726 HIIELDAQEY ELLVLPEAFT IHLPHAPSLD ITRFRSNPTY RDCVRALKDE 701 750 ENSTTRP00000000982/1-649 ---------- ---------- --------- ENSP00000432869/1-721 FHQDLSRHHG AAALKYLPAL QQPQSPARG bmy_04101T0/1-682 FHQDLSRHYG AAALKYLTAL QQPRGPT-- ENSBTAP00000012643/1-726 FHQDLSRHYG AAALKYLTAL QQPRGPA--