KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:31 2014 Check: 00 .. Name: ENSP00000365884/1-465 Len: 466 Check: 5923 Weight: 1.00 Name: ENSBTAP00000012653/1-377 Len: 466 Check: 9344 Weight: 1.00 Name: ENSTTRP00000008124/1-461 Len: 466 Check: 8609 Weight: 1.00 Name: bmy_18645T0/1-430 Len: 466 Check: 2541 Weight: 1.00 Name: BACU007864/1-409 Len: 466 Check: 8061 Weight: 1.00 // 1 50 ENSP00000365884/1-465 -MPATPSLKV VHELPACTLC AGPLEDAVTI PCGHTFCRLC LPALSQMGAQ ENSBTAP00000012653/1-377 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008124/1-461 -MPSTPS--- -HKGAACSEC KGPLEDAVTA TCGHTFCWHS LPPPSQMGAQ bmy_18645T0/1-430 MMPSTPS--- -HKGAACSEC KGPLEDSVTA TCGHTFCRHC LPPPSQMGAQ BACU007864/1-409 ---------- ---------- ---------- ---------- ------MGAQ 51 100 ENSP00000365884/1-465 SSGKILLCPL CQEEEQAETP MAPVPLGPLG ETYCEEHGEK IYFFCENDAE ENSBTAP00000012653/1-377 ---------- ---------- ---------- ---CEEHGEK IYFFCENDAE ENSTTRP00000008124/1-461 PSGRVLLCPL CKEKKQTETL LVPVPLGPLG ETYCEEHGEK IYFFCENDAK bmy_18645T0/1-430 PSGRVLLCPL CKEKEQTETL LVPVPLGPPG ETYCEEHGEK IYFFCENDAE BACU007864/1-409 PSGRVLLCPL CKEKEQTETI LVPVPLGPLG ETYCEEHGEK IYFFCENDAE 101 150 ENSP00000365884/1-465 FLCVFCREGP THQAHTVGFL DEAIQPYRDR LRSRLEALST ERDEIEDVKC ENSBTAP00000012653/1-377 FLCVFCREGP SHQAHVVGFL DEAIQPYRDR LRSRLEALST ERDEIDDMKS ENSTTRP00000008124/1-461 FLCVFCREGP SHQGHVVGLL DDAIQPYRDR LRSRLEALRM DRDDIEDMKS bmy_18645T0/1-430 FLCVFCREGP SHQAHVVGFL DEAIQPYR-- ---------- ---------- BACU007864/1-409 FLCVFCREGP SHQAHVVGFL DEAIQPYRDR LRSRLEALRT ERDEIEDMKS 151 200 ENSP00000365884/1-465 QEDQKLQVLL TQIESKKHQV ETAFERLQQE LEQQRCLLLA RLRELEQQIW ENSBTAP00000012653/1-377 REDQKLQVLL TQIESKKQQV EAAFERLQQE LGKQQRLLLA RLTELERRIW ENSTTRP00000008124/1-461 REDRKFQVLL TQIESKKQQV EVAFERLQQE LGEYQHLLLA RLTELEQQIW bmy_18645T0/1-430 ---------- TQIESKKQQV EAAFERLQQE LGEHQXLLLA RLTELEQQIW BACU007864/1-409 REDQKLQVLL TQIESKKQQV EAAFERLQQE LGEHQRLLLA RLTELEQQIW 201 250 ENSP00000365884/1-465 KERDEYITKV SEEVTRLGAQ VKELEEKCQQ PASELLQDVR VNQSRCEMKT ENSBTAP00000012653/1-377 KERDEYLSKL SEEVARLGAQ VKELEEKCQQ PASELLQDVR VNQSRCEMKT ENSTTRP00000008124/1-461 KERDEYISKL SEEVARLGAQ VKELEEKCQQ PASELLQDVR VNQSRYEMKT bmy_18645T0/1-430 KERGEYISKL SEEVARLGAQ VKELEEKSQQ PASELLQDVR VNQSRYEMTT BACU007864/1-409 KERGEYISKL SEEVTRLGAQ VKEVEEKSQQ PASELLQDVR VNQSRYEMTT 251 300 ENSP00000365884/1-465 FVSPEAISPD LVKKIRDFHR KILTLPEMMR MFSENLAHHL EIDSGVITLD ENSBTAP00000012653/1-377 FVSPEAISPD LVKKIRDLHR KILTLPEMMR AFSENLVHHL ETESGVVTLD ENSTTRP00000008124/1-461 FVSPEAISPD LVEKIRDLHR KILTLPEMMR AFSENLVHHL ETDTGVVTLD bmy_18645T0/1-430 FVSPEAISPD LVKKIRDLHR KILTLPEMMR AFSENLVHHL ETDTGVVTLD BACU007864/1-409 FVSPEAISPD LVKKIRDLHR KILTLPEMMR AFS------- ----GVVTLD 301 350 ENSP00000365884/1-465 PQTASRSLVL SEDRKSVRYT RQKKSLPDSP LRFDGLPAVL GFPGFSSGRH ENSBTAP00000012653/1-377 PQTASRSLVL SEDRKSVRYT RQKQNLPDSP LRFEGLPVVL GSPGFSSGRH ENSTTRP00000008124/1-461 PQTASQSLVL SEDRKSVKYT RRKQNLPDSR LPFEGLPVVL GSPSFSSGRH bmy_18645T0/1-430 PQTASQSLVL SEDRKSVKYT RRKQNLPDSR LRFEGLPVVL GSPGFSSGRH BACU007864/1-409 PQTASQSLVL SEDRKSVKYT RRKQNLPDSR LRFEGLPVVL GSPGFSSGRH 351 400 ENSP00000365884/1-465 RWQVDLQLGD GGGCTVGVAG EGVRRKGEMG LSAEDGVWAV IISHQQCWAS ENSBTAP00000012653/1-377 RWQVEVQLGD GGGCTVGVVG EEVRRKGEQG LSAEEGVWAV VLSHQQCWAS ENSTTRP00000008124/1-461 RWQVEVQLGD GGGCTVGVVG EEGMGKGKQG LSAEEGVWAV ILSHQQCWAS bmy_18645T0/1-430 RWQVEVQLGD GGGCTVGVVG EEVRRKGKQG LSAEEGVWAV ILSHQQCWAS BACU007864/1-409 RWQVEVQLGD GGGCTVGVVG EEVRRKGKQG LSAEEGVWAV ILSHQQCWAS 401 450 ENSP00000365884/1-465 TSPGTDLPLS EIPRGVRVAL DYEAGQVTLH NAQTQEPIFT FTASFSGKVF ENSBTAP00000012653/1-377 TSPGTDLPLS DIPRHVGVAL DYEAGRVALL DADTQAPIFT FTASFSGKVF ENSTTRP00000008124/1-461 TSPGTDLPLS EIPRLVGVSL DYEAGHLALL NAETQEPIFT FTASFSGKVY bmy_18645T0/1-430 TSPGTDLPLS EIPRLVGVAL DYEAGSLALL NAETQAPIFT FTASFSGKVY BACU007864/1-409 TSPGTDLPLS EIPRLVGVAL DYEAGSLALL DAETQAPIFT FTASFSGKVY 451 500 ENSP00000365884/1-465 PFFAVWKKGS CLTLKG ENSBTAP00000012653/1-377 PFFAVWKKGS ------ ENSTTRP00000008124/1-461 PFFAVWKKGS CLTLKG bmy_18645T0/1-430 PFFAVWKKGS CLTLKG BACU007864/1-409 PIFAVWKKGS CLTLKG