KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:33 2014 Check: 00 .. Name: ENSP00000363320/1-504 Len: 527 Check: 6241 Weight: 1.00 Name: ENSBTAP00000012691/1-524 Len: 527 Check: 1761 Weight: 1.00 Name: ENSTTRP00000005359/1-520 Len: 527 Check: 276 Weight: 1.00 Name: bmy_02019T0/1-488 Len: 527 Check: 9682 Weight: 1.00 Name: BACU018219/1-501 Len: 527 Check: 7757 Weight: 1.00 // 1 50 ENSP00000363320/1-504 MKEESAAQLG CCHRPMALGG TGGSLSPSLD FQLFRGDQVF SACRPLPDMV ENSBTAP00000012691/1-524 MKGEPAPELG CCHKTKPPGS TGDSLSPNLD SQLCQDGQVF PAFKPHPDTL ENSTTRP00000005359/1-520 MKGEPAPELG CCHKTKPLGS TGDSLSPHSD SQLCQGDQVL PGSRPLPDTV bmy_02019T0/1-488 MKGEPAPELG CCHKTKPLGS TGGSLSPHSD FQLCQGNQVF PDLRPLPDTV BACU018219/1-501 MKGEPAPELG CCHKTNPLGS TGGSLSPHSD FQLCQGDQVF PAFRPLPDTV 51 100 ENSP00000363320/1-504 DAHGPSCASW LCPLPLAPGR SALLACLQDL DLNLCTPQPA PLGTDLQGLQ ENSBTAP00000012691/1-524 DPHGQSWASW LCPWPLAPAK SALLACPQGL DLYLCALQSA TLATAPRGLR ENSTTRP00000005359/1-520 DAHGPSCASW LYPLPLALAR SSLLACPQGP DVYLCTLKSA PPGTAPQGLR bmy_02019T0/1-488 DAHGPSCASW LCPLPLALAR SSLLACPQGL DVYLCTLQSA PPGTALQGLR BACU018219/1-501 DAHGPSCASW LCPLPLALAR SSLLACPQGL DVYLCTLQSA PLGTAPQGLR 101 150 ENSP00000363320/1-504 EDALSMKHEP PGLQASSTDD KKFTVKYPQN KDKLGKQPER AGEGAPCPAF ENSBTAP00000012691/1-524 EDALSARHLP PRLPAGFFSD EKLPAKCPLS RDKMGSQTER AGEGAPCPSF ENSTTRP00000005359/1-520 EDASSTRHQP PRRPAGSSNG EKLTAKYPLS RDKMGRQRER AGEGSPSPSF bmy_02019T0/1-488 EDALSTRHQP PRRPAGSSNG EKLTAKYPLS GEKMGSQLER AGERSPRPSF BACU018219/1-501 EDALSTRHQP PRRPAGSSNG EKLTAKYPLS RDKMGSQLER AGEGSPHPSF 151 200 ENSP00000363320/1-504 SSHNSSSPPP LQNRKSPSPL AFCPCPPVNS ISKELPFLLH AFYPGYPLLL ENSBTAP00000012691/1-524 SPPNSSSPNS WQNKKS--PL AFCSCPPTPP NSKELSSHFC PFYPAYPFFL ENSTTRP00000005359/1-520 SPHNSSFPNP WQDKKSPSPL AFCSWPPPTP ISKELPSHLC PFYPVYPLLL bmy_02019T0/1-488 SPHNSSSPNP WQDKKSPSPL AFCSWPPPTA ISKEFPSHLR PFYPAYPLLL BACU018219/1-501 SPHNSSSPNP WQDKKSPSPL PFCSWPLPTP ISKEFPSHLC PFYPAYPFLL 201 250 ENSP00000363320/1-504 PPPHLFTYGA LPSDQCPHLL MLPQDPSYPT MAMPSLLMMV NELGHPSARW ENSBTAP00000012691/1-524 PAPYLVTYGS LPSVPCAPRF KLPQDTPYAT KAVPSLLINV NESEHPSTWE ENSTTRP00000005359/1-520 PSPYLITCGG LPSVQCPPLF MLPQNTSYTT MAVPTLLMNV YEAGHSSTQ- bmy_02019T0/1-488 PSPYLVTCGG LPSVQCPPLF MLPQNTSYTT MAVPSLLMNV YEAGHSSTRG BACU018219/1-501 PSPYLVTCGG LPSVQCPPLF MLPQNTSYTT MAVPSLLMNV YEAGHSSTQG 251 300 ENSP00000363320/1-504 ETLLPYPGAF QASGQALPSQ ARNPGAGAAP TDSPGLERGG MASPAKRVPL ENSBTAP00000012691/1-524 ETLHSYPGAC QDSGQTQPSQ SQNPGPAAAR TYSMGPERAG RAAAGKRAPL ENSTTRP00000005359/1-520 ETLHPYAGAS QASGQTQPSQ A-DPGSAAAR TDSTGLXXXX XXXXXXXXXX bmy_02019T0/1-488 ETLHPYPGAS QASGQTQPSQ AWNPGSAAAR TYSTGLESAD WAVPAKSAQP BACU018219/1-501 ETLHPYPGAS QASGQTQPSQ AQNPGSAAAR TYSTGLERAG WAVPAKLALP 301 350 ENSP00000363320/1-504 SSQTGTAALP YPLKKKNGKI LYECNICGKS FGQLSNLKVH LRVHSGERPF ENSBTAP00000012691/1-524 GSQAGSAALP YPLKKENGKI LYECNVCSKS FGQLSNLKVH LRVHSGERPF ENSTTRP00000005359/1-520 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXVH LRVHSGERPF bmy_02019T0/1-488 GSQAGSSALP YPLKKENGKI LYECNVCSKS FRQLSNLKVH LRVHSGERPF BACU018219/1-501 GSQAGSSALP YPLKKENGKI LYECNVCSKS FRQISNLKVH LRVHSGERPF 351 400 ENSP00000363320/1-504 QCALCQKSFT QLAHLQKHHL VHTGERPHKC SV-------- ---------- ENSBTAP00000012691/1-524 QCALCQKSFT QLAHLQKHHL VHTGERPHEC PVPDTVVPGR NHGGKLPGLH ENSTTRP00000005359/1-520 QCALCQKSFT QLAHLQKHHL VHTGKRPHKC PT--LWVPGR NHGES-FQAC bmy_02019T0/1-488 QCALCQKSFT QLAHLQKHHL VHTGERPHKC PM-------- ---------- BACU018219/1-501 QCALCQKSFT QLAHLQKHHL VHTGERPHKC PT--LWVPGR NHGGK-PGLH 401 450 ENSP00000363320/1-504 ----CHKRFS SSSNLKTHLR LHSGARPFQC SVCRSRFTQH IHLKLHHRLH ENSBTAP00000012691/1-524 HREMCHKRFS SSSNLKTHLR LHSGARPFQC SVCPSRFTQL VHLKLHLRLH ENSTTRP00000005359/1-520 YREMCHKHFS SSSNL-THLC LHSGARPFQC SVCPSRFTQH VHLKLHRRLH bmy_02019T0/1-488 ----CHKRFS SSSNLKTHLR LHSGAQPFQC SVCPSRFTQH VHLKLHHRLH BACU018219/1-501 YREMCHKRFS SSSNLKTHLR LHSGAQPFQC SVCPSRFTQH VHLKLHHRLH 451 500 ENSP00000363320/1-504 APQPCGLVHT QLPLASLACL AQWHQGALDL MAVASEKHMG YDIDEVKVSS ENSBTAP00000012691/1-524 APRPCGLAHT HLPLASLTYL ARWHQGALDI LAAPSERQMD RDMDKVKVSS ENSTTRP00000005359/1-520 APRPCSLAHT HLPLASLACL ARWLQGALDL VVAPSERQID SDVDKVKVSS bmy_02019T0/1-488 SPRPCSLAHT HLPLASLAYL ARWHQGALDL VVAPSERQID WDVDKVKVSS BACU018219/1-501 APRPCSLAHT HLPLASLACL ARWHQGALDL VVAPSERQID WDVDKVKVSS 501 550 ENSP00000363320/1-504 TSQGKARAVS LSS-AGTPLV MGQDQNN ENSBTAP00000012691/1-524 ASQGNSAGGD FTS-HSTWQV MGHSQEE ENSTTRP00000005359/1-520 AS-GKARAAS LSSGARTALG RGQGQSN bmy_02019T0/1-488 ASRGK----- ---------- --QGQPA BACU018219/1-501 ASRG------ ---------- -------