KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:34 2014 Check: 00 .. Name: ENSP00000343103/1-692 Len: 737 Check: 5081 Weight: 1.00 Name: ENSBTAP00000012699/1-695 Len: 737 Check: 9208 Weight: 1.00 Name: BACU018130/1-692 Len: 737 Check: 5160 Weight: 1.00 Name: bmy_05332T0/1-620 Len: 737 Check: 2828 Weight: 1.00 Name: ENSTTRP00000010956/1-683 Len: 737 Check: 7313 Weight: 1.00 // 1 50 ENSP00000343103/1-692 ---------- ---------- ---------- ----MKIFCS RANPTTGSVE ENSBTAP00000012699/1-695 ---------- ---------- ---------- ----MKVFCG RANPTTGSVE BACU018130/1-692 MERFSWPRLL RIRPVYRQLA RLLFYANTEE LIGTMKVFCG RANPTTGSVE bmy_05332T0/1-620 ---------- ---------- ---------- ------MFY- -------AVT ENSTTRP00000010956/1-683 ---------- ---------- ---------- ----MKVFCG RANPTTGSVE 51 100 ENSP00000343103/1-692 WLEEDEHYDY HQEIARSSYA DMLHDKDRNV KYYQGIRAAV SRVKDRGQKA ENSBTAP00000012699/1-695 WLEEDEHYDY HQEIARSSYA DMLHDKDRNM KYYQGIRAAV SRVKDRGQKA BACU018130/1-692 WLEEDEHYDY HQEIARSSYA DMLHDKDRNM KYYQGIRAAV SRVKDKGQKA bmy_05332T0/1-620 WLE------- ---------- ---------- ---------L CNLNWAGWK- ENSTTRP00000010956/1-683 WLEEDEHYDY HQEIARSSYA DMLHDKDRXX XXXXXXXXXX XXXXXXXXXX 101 150 ENSP00000343103/1-692 LVLDIGTGTG LLSMMAVTAG ADFCYAIEVF KPMADAAVKI VEKNGFSDKI ENSBTAP00000012699/1-695 LVLDIGTGTG LLSMMAVTAG ADFCYAIEVF KPMADAAVKI VEKNGFSDKI BACU018130/1-692 LVLDIGTGTG LLSMMAVTAG ADFCYAIEIF KPMADAAVKI VEKNGFSDKI bmy_05332T0/1-620 ---------- ---------- --------VF KPMADAAVKI VEKNGFSDKI ENSTTRP00000010956/1-683 XXXXXXXXXX XXXXXXXXXX XXXXXXXXVF KPMADAAVKI VEKNGFSDKI 151 200 ENSP00000343103/1-692 KVINKHSTEV TVGPEGDMPC RANILVTELF DTELIGEGAL PSYEHAHRHL ENSBTAP00000012699/1-695 KVINKHSTEV TVGPDGDMPC RANILITELF DTELIGEGAL PSYEHAHRHL BACU018130/1-692 KIINKHSTEV TIGPDGDMPC RANILITELF DTELIGEGAL PSYEHAHRHL bmy_05332T0/1-620 KIINKHSTEV TIGPDGDMPC RANILITELF DTELIGEGAL PSYEHAHRHL ENSTTRP00000010956/1-683 KIINKHSTEV TIGPDGDMPC RANILITELF DTELIGEGAL PSYEHAHRHL 201 250 ENSP00000343103/1-692 VEENCEAVPH RATVYAQLVE SGRMWSWNKL FPIHVQTSLG EQVIVPPVDV ENSBTAP00000012699/1-695 VQANCEAVPH RATVYAQLVE SRRMWSWNKL FPIRVQTSRG ERVIIPPLEL BACU018130/1-692 VQENCEAVPH RATVYAQLVE SRRMWSWNKL FPIRVQTSLG EQVIVPPLEL bmy_05332T0/1-620 VQENCEAVPH RATVYAQLVE SRRMWSWNKL FPIRVQTSLG EQVIVPPLEL ENSTTRP00000010956/1-683 VQKNCEAVPH RATVYAQLVE SRRMWSWNKL FPIRVQTSLG EQVIVPPLEL 251 300 ENSP00000343103/1-692 ESCPGAPSVC DIQLNQVSPA DFTVLSDVLP MFSIDFSKQV SSSAACHSRR ENSBTAP00000012699/1-695 ERCPGAPSVC DIQLNQVSPA DFTILSDVLP MFSVDFSKQV SSSAACHSRQ BACU018130/1-692 ERCPGAPSVY DIQLNQVSLT DFTVLSDVLP MFSVDFSKQV SSSAASHSRQ bmy_05332T0/1-620 ERCPGAPSVY DIQLNQVSLT DFTVLSDVLP MFSVDFSKQV SSSAASHSRQ ENSTTRP00000010956/1-683 ERCPGAPSVY DIQLNQVSPT DFTVLSNVLP MFSVDFSKQV SSSTASHSRQ 301 350 ENSP00000343103/1-692 FEPLTSGRAQ VVLSWWDIEM DPEGKIKCTM APFWAHSDPE EMQWRDHWMQ ENSBTAP00000012699/1-695 FEPLVSGRAQ VVLSWWDIEM DPEGKIKCTM APSWAHSDPE ELQWRDHWMQ BACU018130/1-692 FEPLASGQAQ VVLSWWDIEM DPEGKIKCTM APFWAHSDPE ELQWRDHWMQ bmy_05332T0/1-620 FEPLASGQAQ VVLSWWDIEM DPEGKIKCTM APFWAHSDPE ELQWRDHWMQ ENSTTRP00000010956/1-683 FEPLASGQAQ VVLSWWDIEM DPEGKIKCTT APFWAHSDPE ELQWRDHWMQ 351 400 ENSP00000343103/1-692 CVYFLPQEEP VVQGSALYLV AHHDDYCVWY SLQRTSPEKN ERVRQMRPVC ENSBTAP00000012699/1-695 CVYFLPQEEP VVQGLALCLV AYHDDYCVWY SLQKTSPEKN GRVHPVRPVC BACU018130/1-692 CVYFLPEEEP VVQGSALCLV AHHDDYCVWY SLQRTSPEKD GRAHPARPVC bmy_05332T0/1-620 CVYFLPEEEP VVQGSALCLV AHHDDYCVWY SLQRTSPEKD GRAHPARPVC ENSTTRP00000010956/1-683 CVYFLPEEEP VVQGSALCLV AHHDDYCVWY SLQRTS-EKD GRVH--QPVC 401 450 ENSP00000343103/1-692 DCQAHLLWNR PRFGEINDQD RTDRYVQALR TVLKPDSVCL CVSDGSLLSV ENSBTAP00000012699/1-695 DCQAHLLWNR PRFGEINDRN RTDQYIQALR TVLKPDSVCL CVSDGSLLSM BACU018130/1-692 DCQAHLLWNR PRFGEINDQN RTDQYVQALK TVLKPDGVCL CVSDGSLLSM bmy_05332T0/1-620 DCQAHLLWNR PRFGEINDQN RTDQYVQALR TVLKPDGVCL CVSDGSLLSM ENSTTRP00000010956/1-683 DC-SHLF--- RRF-EI-DQN RTDQY--QLR -VLKPDSVCL CISDGSLLSI 451 500 ENSP00000343103/1-692 LAHHLGVEQV FTVESSAASH KLLRKIFKAN HLEDKINIIE KRPELLTNED ENSBTAP00000012699/1-695 LAYHLGVEQV FTIENSAVSH RLMKKIFKAN HLEDKINIIE KRPELLTPAD BACU018130/1-692 LAHHLGAEQV FTIENSAASH RLM------- ---------- ---------- bmy_05332T0/1-620 LAHHLGAEQV FTIENSAASH RLMKKIFKAN HLEDKINIIE KRPELLTPAD ENSTTRP00000010956/1-683 LAHHLGAEQV FTIENSAASH RLMKKIFKAN HLEDKINIIE KRPELLTPAD 501 550 ENSP00000343103/1-692 LQGRKVSLLL GEPFFTTSLL PWHNLYFWYV RTAVDQHLGP GAMVMPQAAS ENSBTAP00000012699/1-695 LEGKKVSLLL GEPFFTTSLL PWHNLYFWYV RTAVDQHLGP GAVVMPQAAS BACU018130/1-692 ---KKVSLLL GEPFFTTSLL PWHNLYFWYV RTAVDRHLAP GAVVMPQAAS bmy_05332T0/1-620 LEGKKVSLLL GEPFFTTSLL PWHNLYFWYV RTAVDRHLAP GAVVMPQAAS ENSTTRP00000010956/1-683 LEGKKVSLLL GEPFFTTSLL PWHNLYFWYV RTAVDRHLAP GAVVMPQAAS 551 600 ENSP00000343103/1-692 LHAVVVEFRD LWRIRSPCGD CEGFDVHIMD DMIKRALDFR ESREAEPHPL ENSBTAP00000012699/1-695 LHVVVVEFRD LWRIRSPCGD CEGFDVHIMD DMIKRALDFR ESKEAEPHPL BACU018130/1-692 LHMMVVEFRD LWRIRSPCGD CEGFDVHIMD DMIKHALDFR ESKEAEPHPL bmy_05332T0/1-620 LHMMVVEFRD LWRIRSPCGD CEGFDVHIMD DMIKHALNFR ESKEAEPHPL ENSTTRP00000010956/1-683 LHMMVVEFRD LWRIRSPCGD CEGFNVHIMD DMIKHALDFR ESKEAEPHPL 601 650 ENSP00000343103/1-692 WEYPCRSLSE PWQILTFDFQ QPVPLQPLCA EGTVELRRPG QSHAAVLWME ENSBTAP00000012699/1-695 WEYPCRSLSE PQQILTFDFR QPVPLQPIHA EGTIELRRCG RSHGAVLWME BACU018130/1-692 WEYPCCSRSV PQQILTFDFR QPVPLQPICA EGAIELRRPG RSHGAVLWME bmy_05332T0/1-620 WEYPCCSRSE PQQILTFDFR QPVPLQPVCA EGAIELRRPG RSHGAVLWME ENSTTRP00000010956/1-683 WEYPCRSRSE PQQILTFDFR QPVPLQAVCA EGAIELKRPG RSHGAVLWME 651 700 ENSP00000343103/1-692 YHLTPECTLS TGLLEPADPE GGCC-----W ---NPHCKQA VYFFSPAPDP ENSBTAP00000012699/1-695 YHLTADSTVS TGLLKSAEDE GDCC-----W ---NPHCKQA VYFFNTTLDP BACU018130/1-692 YHLTPDSTVS TGLLKPAEDK VVLCARVPEW AGPESRCCRA T--------- bmy_05332T0/1-620 YHLTPDSTVS TGLLKPAEDK GYCC-----W ---NPHCKQA VYFFNTTLDP ENSTTRP00000010956/1-683 YHLTPDSTVS TGLLKPAEDK GYCC-----W ---NPHCKQA VYFFNTTLDP 701 750 ENSP00000343103/1-692 RALLGGPRTV SYAVEFHPDT GDIIMEFRHA DTPD--- ENSBTAP00000012699/1-695 RAPPGSSQTV TYTVEFHPHT GDITMDFTLS DALDSGC BACU018130/1-692 RLRSGCS--- -WHVQPDDNS SVASGHLALN SSFPP-- bmy_05332T0/1-620 RVPPGGPQTV TYTVEFHPHT GDVTVDFTLS DALDRGC ENSTTRP00000010956/1-683 RVPPGGPQTI TYTVEFHPHT GDVTVDFTLS DALDRGC