KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:36 2014 Check: 00 .. Name: ENSTTRP00000000492/1-936 Len: 1023 Check: 5213 Weight: 1.00 Name: ENSP00000216605/1-991 Len: 1023 Check: 1595 Weight: 1.00 Name: ENSBTAP00000012704/1-935 Len: 1023 Check: 6505 Weight: 1.00 Name: bmy_12353T0/1-963 Len: 1023 Check: 3860 Weight: 1.00 Name: BACU010729/1-970 Len: 1023 Check: 5253 Weight: 1.00 // 1 50 ENSTTRP00000000492/1-936 ---------- ---------- ---------- ---------- ---------- ENSP00000216605/1-991 MRHRVCRGRS GQGRRRSSVI PWPVPKHVGW VVLLGCGGSG TSILVVSIVG ENSBTAP00000012704/1-935 ---------- ---------- ---------- ---------- ---------- bmy_12353T0/1-963 ---------- ---------- ---------- ---------- ---------- BACU010729/1-970 ---------- ---------- -WAVAKHVCW AVPRSSGESR TSVLSVTIVG 51 100 ENSTTRP00000000492/1-936 ------MAPA EILNGKVISA QIRERLKNQV IQMKEQAPGF TPGLAILQVG ENSP00000216605/1-991 SGLIKAMAPA EILNGKEISA QIRARLKNQV TQLKEQVPGF TPRLAILQVG ENSBTAP00000012704/1-935 ------MAPA EILNGKVVSA QIKERLKNQV IQMKEEVPGF IPGLAILQVG bmy_12353T0/1-963 -----MLTP- -IFS--CLSR QIRERLKHQV IQMKEQAPGF TPGLAILQVG BACU010729/1-970 SGLTEVMAPA EILNGKVISA QIRERLKNQV IQMKEQAPGF TPGLAILQVG 101 150 ENSTTRP00000000492/1-936 NRDDSNLYIN VKLKAAEEIG IKATHIKLPR TATESEVLKC ITSLNEDLNV ENSP00000216605/1-991 NRDDSNLYIN VKLKAAEEIG IKATHIKLPR TTTESEVMKY ITSLNEDSTV ENSBTAP00000012704/1-935 NRDDSNLYIN MKLKAAEEIG IKATHIKLPR TATESEVLKC ITSLNEDLTV bmy_12353T0/1-963 NRDDSNLYIN VKLKAAEEIG IKATHIKLPR TATESEVLKC ITSLNEDFTV BACU010729/1-970 NRDDSNLYIN VKLKAAEEIG IKATHIKLPR TATESEVLKC ITSLNEDFTV 151 200 ENSTTRP00000000492/1-936 HGFIVQLPLD SENPINTEAL LNAIAPEKDV DGLTSISAGK LARGDLNDCF ENSP00000216605/1-991 HGFLVQLPLD SENSINTEEV INAIAPEKDV DGLTSINAGK LARGDLNDCF ENSBTAP00000012704/1-935 HGFIVQLPLD SENPINTETL VNAIAPEKDV DGLNSISAGK LARGDLSNCF bmy_12353T0/1-963 HGFIVQLPLD SENPINTEAL INAIAPEKDV DGLTSISAGK LARGDLNDCF BACU010729/1-970 HGFIVQLPLD SENPINTEAL INAIAPEKDV DGLTSISAGK LARGDLNDCF 201 250 ENSTTRP00000000492/1-936 IPCTPKGCLE LIKETXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000216605/1-991 IPCTPKGCLE LIKETGVPIA GRHAVVVGRS KIVGAPMHDL LLWNNATVTT ENSBTAP00000012704/1-935 IPCTPKGCLE LIKETGVQIA GRHAVVVGRS KIVGAPMHDL LLWNHATVTT bmy_12353T0/1-963 IPCTPKGCLE LIKETGVQIA GKHAVVVGRS KIVGAPMHDL LLWSHATVTT BACU010729/1-970 IPCTPKGCLE LIKETGVQLA GRHAVVVGRS KIVGAPMHDL LLWNQATVTT 251 300 ENSTTRP00000000492/1-936 XXXXXXXXXX XVSKGDILVV ATGQPEMVKG EWIKPGAIVI DCGINYVPDD ENSP00000216605/1-991 CHSKTAHLDE EVNKGDILVV ATGQPEMVKG EWIKPGAIVI DCGINYVPDD ENSBTAP00000012704/1-935 CHSKTANLKE EISKGDILVV AAGQPEMVKG EWIKPGAIVI DCGINYVTDD bmy_12353T0/1-963 CHSKTAHLGE EVSKGDILVV ATGQPEMVKG EWIKPGAIVI DCGINYVPDD BACU010729/1-970 CHSKTAHLGE EVSKGDILVV AIGQPEMVKG EWIKPGAIVI DCGINYVPDD 301 350 ENSTTRP00000000492/1-936 TKSSGRKIVG DVAYKEAKER ASFITPVPGG VGPMTVVMLM QSTVESAKRF ENSP00000216605/1-991 KKPNGRKVVG DVAYDEAKER ASFITPVPGG VGPMTVAMLM QSTVESAKRF ENSBTAP00000012704/1-935 TKPNGKKIVG DVAYTEAKER ASFITPVPGG VGPMTVAMLM QSTVESAKRF bmy_12353T0/1-963 TKPSGRKIVG DVAYKEAKER ASFITPVPGG VGPMTVAMLM QSTVDSAKRF BACU010729/1-970 TKPSGRKIVG DVAYKEAKER ASFITPVPGG VGPMTVAMLM QSTVDSAKRF 351 400 ENSTTRP00000000492/1-936 LEKFKPGKWI IQYNKLNLKT PVPSDIDISR SCKPKPIGNL AREIGLSSEE ENSP00000216605/1-991 LEKFKPGKWM IQYNNLNLKT PVPSDIDISR SCKPKPIGKL AREIGLLSEE ENSBTAP00000012704/1-935 LENFKPGKWI IQYNKLNLKT PVPSDIDISR SYKPKPIGNL AREVGLRTEE bmy_12353T0/1-963 LEKFKPGKWI IQYNKLNLKT PVPSDIDISR SCKPKPIGXL AREIGLSSEE BACU010729/1-970 LEKFKPGKWI IQYNKLNLKT PVPSDIDISR SCKPKPIGNL AREIGLSSEE 401 450 ENSTTRP00000000492/1-936 IELYGETKAK VLLSVLERLK HQPDGKYVVV TGITPTPLGE GKSTTTIGLV ENSP00000216605/1-991 VELYGETKAK VLLSALERLK HRPDGKYVVV TGITPTPLGE GKSTTTIGLV ENSBTAP00000012704/1-935 VELYGETKAK VLLSALERLK HQPDGKYVVV TGITPTPLGE GKSTTTIGLV bmy_12353T0/1-963 VELYGETKAK VLLSVLERLK HQPDGKYVVV TGITPTPLGE GKSTTTIGLV BACU010729/1-970 VELYGETKAK VLLSVLERLK HQPDGKYVVV TGITPTPLGE GKSTTTIGLV 451 500 ENSTTRP00000000492/1-936 QGLSAHLHQN VFACVRQPSQ GPTFGIKGGA AGGGYSQVIP MEEFNLHLTG ENSP00000216605/1-991 QALGAHLYQN VFACVRQPSQ GPTFGIKGGA AGGGYSQVIP MEEFNLHLTG ENSBTAP00000012704/1-935 QALGTHLHQN VFACVRQPSQ GPTFGIKGGA AGGGYSQVIP MEEFNLHLTG bmy_12353T0/1-963 QGLSAHLHQN VFACVRQPSQ GPTFGIKGGA AGGGYSQVIP MEEFNLHLTG BACU010729/1-970 QGLSAHLHQN VFACVRQPSQ GPTFGIKGGA AGGGYSQVIP MEEFNLHLTG 501 550 ENSTTRP00000000492/1-936 DIHAITAANN LVAAAIDARM FHEQTQTDKA LFNRLVPSVN GVRKFSDIQI ENSP00000216605/1-991 DIHAITAANN LVAAAIDARI FHELTQTDKA LFNRLVPSVN GVRRFSDIQI ENSBTAP00000012704/1-935 DIHAITAANN LVAAAIDARM FHEETQTDKA LFNRLVPSVN GVRKFSDIQI bmy_12353T0/1-963 DIHAITAANN LVAAAIDARM FHEQTQTDKA LFNRLVPSVN GVRKFSDIQI BACU010729/1-970 DIHAITAANN LVAAAIDARM FHEQTQTDKA LFNRLVPSVN GVRKFSDIQI 551 600 ENSTTRP00000000492/1-936 RRLRRLGIEK TDPTTLTDEE IHRFARLDID PETITWQR-- ---------- ENSP00000216605/1-991 RRLKRLGIEK TDPTTLTDEE INRFARLDID PETITWQR-- ---------- ENSBTAP00000012704/1-935 RRLRRLGIEK TDPATLTDEE INRFARLDID PETITWQR-- ---------- bmy_12353T0/1-963 RRLRRLGIEN TDPTTLTDEE INRFARLDID PETITWQRGL ELAYSLLRHF BACU010729/1-970 RRLRRLGIEK TDPTTLTDDE INRFARLDID PETITWQR-- ---------- 601 650 ENSTTRP00000000492/1-936 ---------- ---------V LDTNDRFLRK ITIGQAPTEK GHTRTAQFDI ENSP00000216605/1-991 ---------- ---------V LDTNDRFLRK ITIGQAPTEK GHTRTAQFDI ENSBTAP00000012704/1-935 ---------- ---------V LDTNDRFLRK ITIGQAPTEK GHSRTAQFDI bmy_12353T0/1-963 LKLXCNKVGS LQGLNIQQIV LDTNDRFLRK ITIGQAPTEK GHTRTAQFDI BACU010729/1-970 ---------- ---------V LDTNDRFLRK ITIGQAPTEK GYTRTAQFDI 651 700 ENSTTRP00000000492/1-936 SVASEIMAVL ALTSSLEDMR ERLSKMVVAS SKKGEPISTE DLGVSGALTV ENSP00000216605/1-991 SVASEIMAVL ALTTSLEDMR ERLGKMVVAS SKKGEPVSAE DLGVSGALTV ENSBTAP00000012704/1-935 SVASEIMAVL ALTSSLEDMR ERLGKMVVAS SKKGEPISTE DLGVSGALTV bmy_12353T0/1-963 SVASEIMAVL ALTSSLEDMR ERLSKMVVAS SKKGEPISAE DLGVSGALTV BACU010729/1-970 SVASEIMAVL ALTSSLKDMR ERLSKMVVAS SKKGEPISAE DLGVSGALTV 701 750 ENSTTRP00000000492/1-936 LMKDAIKPNL MQTLEGTPVF VHAGPFANIA HGNSSIIADR IALKLVGPEG ENSP00000216605/1-991 LMKDAIKPNL MQTLEGTPVF VHAGPFANIA HGNSSIIADR IALKLVGPEG ENSBTAP00000012704/1-935 LMKDAIKPNL MQTLEGTPVF VHAGPFANIA HGNSSIIADR IALKLVGPEG bmy_12353T0/1-963 LMKDAIKPNL MQTLEGTPVF VHAGPFANIA HGNSSIIADR IALKLVGPEG BACU010729/1-970 LMKDAIKPNL MQTLEGTPVF VHAGPFANIA HGNSSIIADR IALKLVGPEG 751 800 ENSTTRP00000000492/1-936 FVVTEAGFGA DIGMEKFFNI KCRYSGLRPH VVVLVATVRA LKMHGGGPTV ENSP00000216605/1-991 FVVTEAGFGA DIGMEKFFNI KCRYSGLCPH VVVLVATVRA LKMHGGGPTV ENSBTAP00000012704/1-935 FVVTEAGFGA DIGMEKFFNI KCRYSGLRPH VVVLVATVRA LKMHGGGPTV bmy_12353T0/1-963 FVVTEAGFGA DIGMEKFFNI KCRYSGLRPH VVVLVATVRA LKMHGGGPTV BACU010729/1-970 FVVTEAGFGA DIGMEKFFNI KCRYSGLRPH VVVLVATVRA LKMHGGGPTV 801 850 ENSTTRP00000000492/1-936 TAGLPLPKAY IEEXXXXXXX XXXXXXXXXX XXXXXXXXXX XMAVNAFKTD ENSP00000216605/1-991 TAGLPLPKAY IQE-NLELVE KGFSNLKKQI ENARMFGIPV VVAVNAFKTD ENSBTAP00000012704/1-935 TAGLPLPKAY IEE-DLELVG KGFSNLKKQI ENARMFGVPV VVAVNAFKTD bmy_12353T0/1-963 TAGLPLPKAY IEE-NLELVE KGFSNLKKQI ENARMFGVPV VVAVNAFKTD BACU010729/1-970 TAGLPLPKAY VEE-NLELVE KGFSNLKKQI ENARMFGVPV VVAVNAFKTD 851 900 ENSTTRP00000000492/1-936 TEAELDLITR LAKEHGAFDA VKCTHWAEGG KGALVLAQAV QRAAQAPSSF ENSP00000216605/1-991 TESELDLISR LSREHGAFDA VKCTHWAEGG KGALALAQAV QRAAQAPSSF ENSBTAP00000012704/1-935 TEAELDLVSR LAKEHGAFDA VKCTHWAEGG KGALALAEAV QRAAAAPSSF bmy_12353T0/1-963 TEAELDLITR LAKEHGAFDA VKCTHWAEGG KGALVLAQAV QRAAQAPSSF BACU010729/1-970 TEAELDLITR LAKEHGAFDA VKCTHWAEGG KGALVLAQAV QRAAQAPSSF 901 950 ENSTTRP00000000492/1-936 QLLYDLKLPV EDKIRIIAQK IYGADDIELL PEAQHKAEVY TKQGFGNLPI ENSP00000216605/1-991 QLLYDLKLPV EDKIRIIAQK IYGADDIELL PEAQHKAEVY TKQGFGNLPI ENSBTAP00000012704/1-935 QLLYDLKLPV EDKIRIIAQK IYGADNIELL PEAQHKAEVY TKQGFGNLPI bmy_12353T0/1-963 QLLYDLKLPV EDKIRIIAQK IYGADDIELL PEAQHKAEVY TKQGFGNLPI BACU010729/1-970 QLLYDLKLPV EDKIRIIAQK IYGADDIELL PEAQHKAEVY TKQGFGTLPI 951 1000 ENSTTRP00000000492/1-936 CMAKTHLSLS HNPEQKGVPT GFVLPIRDIR ASVGAGFLYP LVGTMSTMPG ENSP00000216605/1-991 CMAKTHLSLS HNPEQKGVPT GFILPIRDIR ASVGAGFLYP LVGTMSTMPG ENSBTAP00000012704/1-935 CMAKTHLSLS HNPELKGVPT GFVLPIRDIR ASVGAGFLYP LVGTMSTMPG bmy_12353T0/1-963 CMAKTHLSLS HNPEQKGVPT GFVLPIRDIR ASVGAGFLYP LVGTMSTMPG BACU010729/1-970 CMAKTHLSLS HNPEQKGVPT GFVLPIRDIR ASVGAGFLYP LVGTMSTMPG 1001 1050 ENSTTRP00000000492/1-936 LPTRPCFYDI DLDPETEQVN GLF ENSP00000216605/1-991 LPTRPCFYDI DLDPETEQVN GLF ENSBTAP00000012704/1-935 LPTRPCFYDI DLDPETEQVN GLF bmy_12353T0/1-963 LPTRPCFYDI DLDPQTEQVH GLF BACU010729/1-970 LPTRPCFYDI DLDPETEQVH GLF