KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:40 2014 Check: 00 .. Name: ENSTTRP00000002100/1-561 Len: 763 Check: 477 Weight: 1.00 Name: ENSP00000440534/1-665 Len: 763 Check: 2899 Weight: 1.00 Name: ENSBTAP00000012726/1-684 Len: 763 Check: 5611 Weight: 1.00 Name: bmy_06471T0/1-642 Len: 763 Check: 7953 Weight: 1.00 Name: BACU007748/1-630 Len: 763 Check: 405 Weight: 1.00 // 1 50 ENSTTRP00000002100/1-561 MNRP----AT TTAASRCGDG LDPGPADDRR PPWVVEAPAA GSRQPSVETL ENSP00000440534/1-665 MDRP---AAA AAAGCEGGGG PNPGPAGGRR PPRAAGGATA GSRQPSVETL ENSBTAP00000012726/1-684 MDRPAAAAAA AAAGCDSGGG LGPGPAGGRR PPRVAGGPAV GSRQPSVETL bmy_06471T0/1-642 ---------- ---------- ---------- ---------- ---------- BACU007748/1-630 ---------M ANSLCSVVPL PSPPSLGDPG STLKSQFEKH CFRQVAVTET 51 100 ENSTTRP00000002100/1-561 DSPTGSHVEW CKQLIAATIS SQISGSVTSE NVSRDYK--- ---------- ENSP00000440534/1-665 DSPTGSHVEW CKQLIAATIS SQISGSVTSE NVSRDYK--- ---------- ENSBTAP00000012726/1-684 DSPTGSHVEW CKQLIAATIS SQISGSVTSE NVSRDYKEIQ EEHNGYPSEA bmy_06471T0/1-642 ---------- ---------- ---------- ---------- ---------- BACU007748/1-630 IHPA------ ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000002100/1-561 ----ALRDGN KLAQMEEAPL ------FPGE SIKAIVKDVM YICPFVGAVS ENSP00000440534/1-665 ----ALRDGN KLAQMEEAPL ------FPGE SIKAIVKDVM YICPFMGAVS ENSBTAP00000012726/1-684 EADQALRDGN KLAQMEEAPL ------LPGE SIKAIVKDVM YICPFVGAVT bmy_06471T0/1-642 ---------- ----MEEAPL ------FPGE SIKAIVKDVM YICPFVGAVS BACU007748/1-630 ----ALGSGG GESTGEARKL MGLQLDLPSG S-PAQVKDVM YICPFVGAVS 151 200 ENSTTRP00000002100/1-561 GTLTVTDFKM YFKNVERDPH FVLDVPLGVI SRVEKIGVQS HGDNSCGIEI ENSP00000440534/1-665 GTLTVTDFKL YFKNVERDPH FILDVPLGVI SRVEKIGAQS HGDNSCGIEI ENSBTAP00000012726/1-684 GTLTVTDFKM YFKNVERDPH FVLEVPLGVI SRVEKIGAQS HGDNSCGIEI bmy_06471T0/1-642 GTLTVTDFKM YFKNVERDPH FVLDVPLGVI SRVEKIGAQS HGDNSCGIEI BACU007748/1-630 GTLTVTDFKM YFKNVERDPH FVLDVPLGVI SRVEKIGAQS HGDNSCGIEI 201 250 ENSTTRP00000002100/1-561 MCKDMRNLRL AYKQEEQSKL GIFDNLNKHA FPLSNGQXXX XXXXXXXXXX ENSP00000440534/1-665 VCKDMRNLRL AYKQEEQSKL GIFENLNKHA FPLSNGQALF AFSYKEKFPI ENSBTAP00000012726/1-684 VCKDMRNLRL AYKQEEQSKL GIFENLNKHA FPLSNGQTLF AFNYKEKFPV bmy_06471T0/1-642 MCKDMRNLRL AYKQEEQSKL GIFENLNKYA FPLSNGQTLF AFNYKEKFPV BACU007748/1-630 MCKDMRNLRL AYKQEEQSKL GIFENLNKHA FPLSNGQTLF AFNYKEKFPV 251 300 ENSTTRP00000002100/1-561 XXXXXXXXXX XXXXXGLPNE SWKISKVNSN YELCDTYPAI IVVPTSVKDD ENSP00000440534/1-665 NGWKVYDPVS EYKRQGLPNE SWKISKINSN YEFCDTYPAI IVVPTSVKDD ENSBTAP00000012726/1-684 NGWKVYDPVS EYKRQGLPNE SWKISKVNSN YELCDTYPAI IVVPTSVKDD bmy_06471T0/1-642 NGWKVYDPVS EYKRQGLPNE SWKISKVNSN YELCDTYPAI IVVPTSVKDD BACU007748/1-630 NGWKVYDPVS EYKRQGLPNE SWKISKVNSN YELCDTYPAI IVVPTSVKDD 301 350 ENSTTRP00000002100/1-561 DLSKVAAFRA KGRIPVLSWI HPESQATITR CSQPLVGPND KRCKEDEKYL ENSP00000440534/1-665 DLSKVAAFRA KGRVPVLSWI HPESQATITR CSQPLVGPND KRCKEDEKYL ENSBTAP00000012726/1-684 DLSKVAAFRA KGRIPVLSWI HPESQATITR CSQPLVGPND KRCKEDEKYL bmy_06471T0/1-642 DLSKVAAFRA KGRIPVLSWI HPESQATITR CSQPLVGPND KRCKEDEKYL BACU007748/1-630 DLSKVAAFRA KGRIPVLSWI HPESQATITR CSQPLVGPND KRCKEDEKYL 351 400 ENSTTRP00000002100/1-561 QTIMDANAQA HKLIIFDARQ NKVASTNKAK GGGYESESAY PNAELVFLEI ENSP00000440534/1-665 QTIMDANAQS HKLIIFDARQ NSVADTNKTK GGGYESESAY PNAELVFLEI ENSBTAP00000012726/1-684 QTIMDANAQA HKLIIFDARQ NSVADTNKAK GGGYESESAY PNAELMFLEI bmy_06471T0/1-642 QTIMDANAQA HKLIIFDARQ NKVASTNKAK GGGYESESAY PNAELVFLEI BACU007748/1-630 QTIMDANAQA HKLIIFDARQ NKVASTNKAK GGGYESESAY PNAELVFLEI 401 450 ENSTTRP00000002100/1-561 HNIHVMRESL RKLKEIAYPA IEEARWLSNV DGTHWLEYIR MLLAGAVRIA ENSP00000440534/1-665 HNIHVMRESL RKLKEIVYPS IDEARWLSNV DGTHWLEYIR MLLAGAVRIA ENSBTAP00000012726/1-684 HNIHVMRESL RKLKEIAYPA IDEARWLSNV DGTHWLEYIR MLLAGAVRIA bmy_06471T0/1-642 HNIHVMRESL RKLKEIAYPA IDEARWLSNV DGTHWLEYIR MLLAGAVRIA BACU007748/1-630 HNIHVMRESL RKLKEIAYPA IDEARWLSNV DGTHWLEYIR MLLAGAVRIA 451 500 ENSTTRP00000002100/1-561 DKIESGKTSV VVHCSDGWDR TSQLTSLAML MLDSYYRTIK GFEALIEKEW ENSP00000440534/1-665 DKIESGKTSV VVHCSDGWDR TAQLTSLAML MLDSYYRTIK GFETLVEKEW ENSBTAP00000012726/1-684 DKVESGKTSV VVHCSDGWDR TAQLTSLAML MLDSYYRTIK GFEALIEKEW bmy_06471T0/1-642 DKIESGKTSV VVHCSDGWDR TSQLTSLAML MLDSYYRTVK GFEALIEKEW BACU007748/1-630 DKIESGKTSV VVHCSDGWDR TSQLTSLAML MLDSYYRTVK GFEALIEKEW 501 550 ENSTTRP00000002100/1-561 ISFGHRFALR VGHGNDNHAD ADRSPIFLQF IDCVWQMTRQ FPSAFEFNEL ENSP00000440534/1-665 ISFGHRFALR VGHGNDNHAD ADRSPIFLQF VDCVWQMTRQ FPSAFEFNEL ENSBTAP00000012726/1-684 ISFGHRFALR VGHGNDNHAD ADRSPIFLQF IDCVWQMTRQ FPSAFEFNEF bmy_06471T0/1-642 ISFGHRFALR VGHGNDNHAD ADRSPIFLQF IDCVWQMTRQ FPSAFEFNEL BACU007748/1-630 ISFGHRFALR VGHGNDNHAD ADRSPIFLQF IDCVWQMTRQ FPSAFEFNEL 551 600 ENSTTRP00000002100/1-561 FLITILDHLY SCLFGTFLCN CEQQRLKEDV YTKTISLW-- ---------- ENSP00000440534/1-665 FLITILDHLY SCLFGTFLCN CEQQRFKEDV YTKTISLWSY INSQLDEFSN ENSBTAP00000012726/1-684 FLITILDHLY SCLFGTFLCN CEQQRLKEDV STKTVSLWSY INSQLDEFSN bmy_06471T0/1-642 FLITILDHLY SCLFGTFLCN CEQQRLKEDV YTKTISLWSY INSQLDEFSN BACU007748/1-630 FLITILDHLY SCLFGTFLCN CEQQRLKEDV YTKTISLWSY INSQLDEFSN 601 650 ENSTTRP00000002100/1-561 ---------- ---------- ---------- ---------- ---------- ENSP00000440534/1-665 PFFVNYENHV LYPVASLSHL ELWVNYYVRW NPRMRPQM-- ---------- ENSBTAP00000012726/1-684 PFFVNYENHV LYPVASLSHL ELWVNYYVRW NPRMRPQT-- ---------- bmy_06471T0/1-642 PFFVNYENHV LYPVTSLSHL ELWVNYYVRW NPRMRPQMQK RRCRGCAGPR BACU007748/1-630 PFFVNYENHV LYPVTSLSHL ELWVNYYVRW NPRMRPQT-- ---------- 651 700 ENSTTRP00000002100/1-561 ---------- ---------- ---------- ---------- ---------- ENSP00000440534/1-665 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012726/1-684 ---------- ---------- ---------- ---------- ---------- bmy_06471T0/1-642 PSMLLGGGLS RGSTRWGGRP GHGSRGGAPV PAAVRARGGR RGPGWGAAGG BACU007748/1-630 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000002100/1-561 ---------- ---------- ---------- ---------- ---------- ENSP00000440534/1-665 ---------- PIHQNLKELL AVRAELQKRV EGLQREVATR AVSSSSERGS ENSBTAP00000012726/1-684 ---------- PTHQNLKELL AVRAELQKRV EDLQREVAAR A-SASSERGS bmy_06471T0/1-642 GADPRLCPQT PIHQNLKELL AVRAELQKRV EDLQREVAAR A-SASSERGS BACU007748/1-630 ---------- PIHQNLKELL AVRAELQKRV EDLQREVAAR A-SASSERGS 751 800 ENSTTRP00000002100/1-561 ---------- --- ENSP00000440534/1-665 SPSHSATSVH TSV ENSBTAP00000012726/1-684 SPSHSVTPVH TSV bmy_06471T0/1-642 SPSHSVTPVH TSV BACU007748/1-630 SPSHSVTPVH TSV