KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:47:40 2014 Check: 00 .. Name: ENSP00000228251/1-372 Len: 387 Check: 3113 Weight: 1.00 Name: ENSBTAP00000012735/1-376 Len: 387 Check: 5227 Weight: 1.00 Name: bmy_14239T0/1-265 Len: 387 Check: 6975 Weight: 1.00 Name: ENSTTRP00000007616/1-264 Len: 387 Check: 5720 Weight: 1.00 // 1 50 ENSP00000228251/1-372 MSEAGEATTT TTT------- -----TLPQA PTEAAAAAPQ DPAPKSPVGS ENSBTAP00000012735/1-376 MSEAGEATST TSTAAAAPSS SAPITTAAAL PQAPAEAAPQ DPAPKSPAGG bmy_14239T0/1-265 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007616/1-264 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000228251/1-372 GAPQAAAPAP AAHVAGNPGG DAAPAATGTA AAASLATAAG SEDAEKKVLA ENSBTAP00000012735/1-376 GAP--PAPAP AALVSGNPGG DAAPGTAAPA SSA----AVG SEDAEKKVLA bmy_14239T0/1-265 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007616/1-264 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000228251/1-372 TKVLGTVKWF NVRNGYGFIN RNDTKEDVFV HQTAIKKNNP RKYLRSVGDG ENSBTAP00000012735/1-376 TKVLGTVKWF NVRNGYGFIN RNDTKEDVFV HQTAIKKNNP RKYLRSVGDG bmy_14239T0/1-265 ---------- ---------N RNDTKEDVFV HQTAIKKNNP RKYLRSVGDG ENSTTRP00000007616/1-264 ---------- ---------- -NDTKEDVFV HQTAIKKNNP RKYLRSVGDG 151 200 ENSP00000228251/1-372 ETVEFDVVEG EKGAEAANVT GPDGVPVEGS RYAADRRRYR RGYYGRRRGP ENSBTAP00000012735/1-376 ETVEFDVVEG EKGAEAANVT GPDGVPVEGS RYAADRRRYR RGYYGRRRGP bmy_14239T0/1-265 ETVEFDVVEG EKGAEAANVT GPDGVPVEGS RYAADRRRYR RGYYGRRRGP ENSTTRP00000007616/1-264 ETVEFDVVEG EKGAEAANVT GPDGVPVEGS RYAADRRRYR RGYYGRRRGP 201 250 ENSP00000228251/1-372 PRNYAGEEEE EGSGSSEGFD PPATDRQFSG ARNQLRRPQY RPQYR---QR ENSBTAP00000012735/1-376 PRNYAGEEEE EGSGSSEGLE APAAAGQFSA ARSQPRRPQF RPQYR----R bmy_14239T0/1-265 PRNCAG-EEE EGSG-SEGFG ASAADGQLAG ALSQRRRPQY RPQYRPQYPR ENSTTRP00000007616/1-264 PRNCAG-EEE EGSG-SEGFG ASAADGQLAG ALSQRRRPQY RPQYRPQYPR 251 300 ENSP00000228251/1-372 RFPPYHVGQT FDRRSRVLPH PNRIQAGEIG EMKDGVPEGA QLQGPVHRNP ENSBTAP00000012735/1-376 RFPPYHVGQT FDRRSRVFPH PSRMQAGEIG EMKDGVPEGA QLQGPVHRNP bmy_14239T0/1-265 RFPPYHVGQT SDRRSRVFPH PNGTQASEIG EMKDGVPEGA QLQGPVHRNP ENSTTRP00000007616/1-264 RFPPYHVGQT SDRRSRVFPQ PNGTQAGEIG EMKDGVPEGA QLQGPVHRNP 301 350 ENSP00000228251/1-372 TYRPRYRSRG PPRPRPAPAV GEAEDKENQQ ATSGPNQPSV RRGYRRPYNY ENSBTAP00000012735/1-376 TYRARYR-RG PPRPRPAPAV GEAEDKENQQ AANGPNQPPA RRGYQRPYNY bmy_14239T0/1-265 TYRARYR-RG PPRPRPAPAV GEAEDKENQQ AANGPNQPPA RRGYRRPYNY ENSTTRP00000007616/1-264 TYRARYRSRG PPRPRPAPAV GEAEDKENQE AANGPNQPPA RRGYRRPYNY 351 400 ENSP00000228251/1-372 RRRPRPPNAP SQDGKEAKAG EAPTENPAPP TQQSSAE ENSBTAP00000012735/1-376 RRRPRPPNAP SQDGKETKAG EAPSENPAPA PEQSSAE bmy_14239T0/1-265 RRRPRPPNAP AQDGKETKAG EAPSENPAPA PEQSSVE ENSTTRP00000007616/1-264 RRRPRPPNAP AQDGKETKAG EAPSENPAPA PEQSSVE