KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:41 2014 Check: 00 .. Name: ENSP00000375899/1-867 Len: 950 Check: 1032 Weight: 1.00 Name: ENSBTAP00000012738/1-401 Len: 950 Check: 6231 Weight: 1.00 Name: ENSTTRP00000008817/1-835 Len: 950 Check: 7309 Weight: 1.00 Name: bmy_04892T0/1-592 Len: 950 Check: 114 Weight: 1.00 Name: BACU010962/1-549 Len: 950 Check: 4131 Weight: 1.00 // 1 50 ENSP00000375899/1-867 MAQQGQQGQM ASGDSNLNFR MVAEIQNVEG QNLQEQVCPE PIFRFFRENK ENSBTAP00000012738/1-401 ---------- ---------R MITEDQNLEE QHLEEQLCYE FIFMLFKEKK ENSTTRP00000008817/1-835 -----VAEKM ASTGTPISGR MITGDQNPEE QNPEEQFFYE FIFRLFKENK bmy_04892T0/1-592 ---------- ---------- MITGDQNPEE QNPEVQFFYE FIFRLFKENK BACU010962/1-549 ---------- ---------- MIAGDQNPEE QNPEVQFFYE FIFRLFKENK 51 100 ENSP00000375899/1-867 VEIASAITRP FPFLMGLRDR SFISEQMYEH FQEAFRNLVP VTRVMYCVLS ENSBTAP00000012738/1-401 VEIAGAILKP FPFLMGLRDR GFISEPMYQD FQEACRNLVP VERVAYNALD ENSTTRP00000008817/1-835 VEIATAITKP FPFFMGLRDR GFIPEQMYEH FQEACTNLVP VDRVVYDALS bmy_04892T0/1-592 VEIASAITKP FPFLMGLRDR GFIPEQMYKH FQEACGNLVP VERVVYDALS BACU010962/1-549 VEIASAITKP FPFLMGLRDR GFIPEQMYKH FQEACGNLVP VERVVYDALS 101 150 ENSP00000375899/1-867 ELEKTFGWSH LEALFSRINL MAYPDLNEIY RSFQN----- ---------- ENSBTAP00000012738/1-401 ELEKKFDKTV LEALFSKVNL KAYPDLLQIC NNFQNAIRDK FYYQILDEGE ENSTTRP00000008817/1-835 ELEKKFDKTI LDALFSRVNL KTYPDLLHVC RNFQN----- ---------- bmy_04892T0/1-592 ELEKKFDKTI LDALFSRVNL KAYPDLLQIC RNFQNVIHEN FHYQTVGEGE BACU010962/1-549 ELEKKFDKTI LDALFSRVNL KAYPDLLQIC RNFQNVIHEN FHYQSVGEGE 151 200 ENSP00000375899/1-867 ---------- ---VCYEHSP LQMNNVNDLE DRPRLLPYGK QENSNACHEM ENSBTAP00000012738/1-401 TKEMLNSQLN HEQVSLEHSP LQMNSVRGFE SMPRLLPYNR Q--------- ENSTTRP00000008817/1-835 ---------- ---VSLEQSP LQMNNVIRLE DVPSLLPYNK QXXXXXXXXX bmy_04892T0/1-592 TKETFNLQLN REQVSLEQSP LQMNNVMRLE DVPSLLPYDR R--------- BACU010962/1-549 TKETFNLQLN REQVSLEQSP LQMNNVIRLE DVPSLLPYDR R--------- 201 250 ENSP00000375899/1-867 DDIAVPQEAL SSSPRCEPGF SSESCEQLAL PKAGGGDAED APSLLPG-GG ENSBTAP00000012738/1-401 ---------- ---------- ---------- -ENSNAWDEE WPQEAS---- ENSTTRP00000008817/1-835 XXXXXXXXXX XXXXXXXXXF SLVSCEPKAL QGTNEGNSEE IPKLQAGNGG bmy_04892T0/1-592 ---------- ---------- --VSCEHKAL QSTNEGKSEE IPKLQA---- BACU010962/1-549 ---------- ---------- --VSCEHKAL QRTNEGKSEE IPKLQA---- 251 300 ENSP00000375899/1-867 VSCKLAIQID EGESEEMPKL LPYDTEVLES NGMIDAARTY STAPGEKQGE ENSBTAP00000012738/1-401 ---------- ----SFSPRY VP-------- ---------- ---------- ENSTTRP00000008817/1-835 XXXXXXXXXX XXXXXXXXXX XXXXXXXLEK NSMRDGEKTE SSASEKEEGE bmy_04892T0/1-592 ---------- ---------- ---------- ---------- ---------- BACU010962/1-549 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000375899/1-867 EEGRNSPRKR NQDKEKYQES PEGRDKETFD LKTPQVTNEG EPEKGLCLLP ENSBTAP00000012738/1-401 ---------- ---------- ------VTSD PKAPQVPPEG EPKEVLSLLP ENSTTRP00000008817/1-835 KAGGNRHGKR NQD--KYQEI PIARYRVTCY PKTPQMTHEG EPKEVLCLLP bmy_04892T0/1-592 ---------- ---------- ---------- ---------- ---------- BACU010962/1-549 ---------- ---------- ------VTYY PKAPQMTHEG KPKEVLSLLP 351 400 ENSP00000375899/1-867 GE-------- ---------- ---------- ------GEEG SDDCSEMCDG ENSBTAP00000012738/1-401 AE-------- ---------- ---------- ------GEED NNACCVICEE ENSTTRP00000008817/1-835 VEGEVSCFSL VSCDPEASQM TNKEEPEKLP SQPLCDGEEG SSTCSEVCDE bmy_04892T0/1-592 ---------- ---------- ---------- --------ED NNACWEVCDK BACU010962/1-549 VE-------- ---------- ---------- ------GEEY NNACWEVCDK 401 450 ENSP00000375899/1-867 EEPQEASSSL ARCGSVSCLS AETFDLKTPQ VTNEGEPEKE LSLLPGEGEE ENSBTAP00000012738/1-401 EEPQEALSSP SRCEPVTW-- ----DPKAPQ MPPEGEAEEV LSLLPAEGGE ENSTTRP00000008817/1-835 EEPQESLSSL PKSGAVSG-- ----KLEALQ MNTEGDSE-- ---------- bmy_04892T0/1-592 EEPQEASSSP PRCESVSC-- ----DPEASQ MTNEEEPE-- ---------- BACU010962/1-549 EEPQEALSSP PRCGPVSC-- ----DPEASQ MTNEEEPE-- ---------- 451 500 ENSP00000375899/1-867 GSDDCSEMCD GEERQEASSS LARRGSVSSE LENHPM---- --------NE ENSBTAP00000012738/1-401 SCDPEASQMT DKEEQE---- ---------E LPSQPLDGEE GSGTCLEICD ENSTTRP00000008817/1-835 ---------- ---------- ---------E LTSSPP---- --------SY bmy_04892T0/1-592 ---------- ---------- ---------E LPSQPL---- --------C- BACU010962/1-549 ---------- ---------- ---------E LPSQPL---- --------C- 501 550 ENSP00000375899/1-867 EGESEELASS LLYDNV--PG AEQSAYENEK CSCVMCFSEE VPGSPEARTE ENSBTAP00000012738/1-401 EEETQESLSS PPKSGPGEGG TELPTFGN-K CSCVMCFSKD VPRDPEGRTE ENSTTRP00000008817/1-835 NGQ------- ---------G AEPPTFGNEK CSCVICFSKD VPGGPEGSTE bmy_04892T0/1-592 DGE------- ---------G AELPTFGNEK CSCVMCFSKD VPGGPEGSTE BACU010962/1-549 DGE------- ---------- ---------- ---------D VPGGPEGSTE 551 600 ENSP00000375899/1-867 SDQACGTMDT VDIANNSTLG KPKRKRRKKR GHGWSRMRMR RQENSQQNDN ENSBTAP00000012738/1-401 SMQADDMLDT VDLGNNSTVR KPKKRRSKS- ---------- ---------- ENSTTRP00000008817/1-835 SKEASDMMDT VDLGNNSTLG KPKRKRKKKK GHSWSRVKMK HQRKIPQKDN bmy_04892T0/1-592 SKEGSDMMDT VDLGNNSTLG KLKRKRKKKK GHSWTRVKMK YQRNIHQKDN BACU010962/1-549 SKEASDMMDT VDLGNNSTLG KLKRKR---- ---------- --------NN 601 650 ENSP00000375899/1-867 SKADGQVVSS EKKANVNLKD LSKIRGRKRG KPGTRFTQSD RAAQKRVRSR ENSBTAP00000012738/1-401 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008817/1-835 SNAAGQLASS GKKVKRHLQD PAKIRRRRRG RGRLHLTHSD RAPQKKVKSR bmy_04892T0/1-592 SNAAGQLASS GKKVKRHLQD PVKIRRRRRG RQRLHLTHSG RALQKKVKSR BACU010962/1-549 SNAAGQLASS GKKVKMHLQD PIKIRR---- ---------- ---------- 651 700 ENSP00000375899/1-867 ASRKHKDETV DFKAPLLPVT CGGVKGILHK KKLQQGILVK CIQTEDGKWF ENSBTAP00000012738/1-401 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008817/1-835 GRRKRRYQKV DFHSRILPVS CGKVKGMLHK KKLKEGVWVK CIQSEDGDWF bmy_04892T0/1-592 GQRKHRYEKV DFHSQILPVT CGKVKGMLHK KKLEEGVLVK CIQSENGDWF BACU010962/1-549 -QRKHRNEKV DFHSQILPVT CGKVKGMLHK KKLEEGVLVK CIQSENGDWF 701 750 ENSP00000375899/1-867 TPTEFEIKGG HARSKNWRLS VRCGGWPLRW LMENGFLPDP PRIRYRKKKR ENSBTAP00000012738/1-401 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008817/1-835 TPREFEIRGG HERSKNWKIS VRCGGRPLRW LIEKRFLHNP PRKYGRMRKR bmy_04892T0/1-592 TPREFEIRGG HERSKNWKIS VRCSGMPLRW LIEKG----- ---------- BACU010962/1-549 TPREFEIRGG HERSKNWKIS VRCSGMPLRW LIEKG----- ---------- 751 800 ENSP00000375899/1-867 ILKSQNNSSV DPCMRNLDEC EVCRDGGELF CCDTCSRVFH EDCHIPPVEA ENSBTAP00000012738/1-401 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008817/1-835 VPKSHDSTLD DLCLGNSDVC ETCRDGGKLF CCDTCSRSFH EDCHIPPVET bmy_04892T0/1-592 VPKSHDNTLD NLC------- ---------- ---------- EPVELHLLQD BACU010962/1-549 VPKSPDNTLD NLC------- ---------- ---------- ---------- 801 850 ENSP00000375899/1-867 ERTPWNCIFC RMKESPGSQQ CCQES---EV LERQMCPEEQ LKCEFLLLKV ENSBTAP00000012738/1-401 ---------- ---------- ---------- ---------- -ACNFI---- ENSTTRP00000008817/1-835 ERDLWSCTFC RAKEFSGSQR CLGES---EV LARQMQPEEQ LKCEFLLLKV bmy_04892T0/1-592 EGVFWKPAVS RGIWGPGKAD AARGAVGESD GNPKSSPFPS HKCEFLLLKV BACU010962/1-549 ---------- ---------- ---------- ---------- -KCEFLLLKV 851 900 ENSP00000375899/1-867 YCCSESSFFA KIPYYYYIRE ACQGLKEPMW LDKIKKRLNE HGYPQVEGFV ENSBTAP00000012738/1-401 -CF------- ---------- ---------- ---------- ---------- ENSTTRP00000008817/1-835 YCHSESTFFA KIPYYYYIKE ASKNLKEPMW LDKIKKKLNE QGYSYVEGFV bmy_04892T0/1-592 YCHTESTFFA KIPYYYYIKE ASENLKEPMW LDKIKKRLNE QGYSHVEG-- BACU010962/1-549 YCHTESTFFA KIPYYYYIKE ASENLKEPMW LDKIKKKLNE QGYSHVEGFV 901 950 ENSP00000375899/1-867 QDMRLIFQNH RASYKYKDFG QMGFRLEAEF EKNFKEVFAI QETNGNN--- ENSBTAP00000012738/1-401 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008817/1-835 QDMRLIFQNH RASYKFNDFG QMGLRLEAEF EKNFKEVFTI RETNEDSS-- bmy_04892T0/1-592 ---------- ---------- ---------- ---------- -----STTLA BACU010962/1-549 QDMRLIFQNH RASYKFNDFG LMGLRLEAEF EKNFKEVFTI QETNEDSSLE