KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:42 2014 Check: 00 .. Name: ENSP00000325618/1-1025 Len: 1133 Check: 8119 Weight: 1.00 Name: ENSBTAP00000012765/1-971 Len: 1133 Check: 9384 Weight: 1.00 Name: BACU001470/1-881 Len: 1133 Check: 7504 Weight: 1.00 Name: ENSTTRP00000005974/1-954 Len: 1133 Check: 349 Weight: 1.00 Name: bmy_07586T0/1-1023 Len: 1133 Check: 9563 Weight: 1.00 // 1 50 ENSP00000325618/1-1025 ---------- ---MVAMAEA EAGVAVEVRG LPPAVPDELL TLYFENRRRS ENSBTAP00000012765/1-971 VGLLPTPSSG PRVAMGEAEA EVGAAVELSG LPTSIPDELL TLYFENRRSS BACU001470/1-881 ---------- ---MMDEEEA ELRVAVELRG LPPDVPDELL TLYFENPRSS ENSTTRP00000005974/1-954 ---------- -AVMMGEEEA ELGAAVELRG LPPDVPDELL TLYFENRRSS bmy_07586T0/1-1023 ---------- ---MMDEEEA ELRAAVELRG LPPDVPDELL TLYFENPRSS 51 100 ENSP00000325618/1-1025 GGGPVLSWQR LGCGGVLTFR EPADAERVLA QADHELHGAQ LSLRPAPPRA ENSBTAP00000012765/1-971 GGGPVASWQR LGRGGILTFE EPADAARVLA WPEHTLQGAR LSLRPAPPRA BACU001470/1-881 GGGPVSSWQR LGRGGILTFQ EAADAARVLA QEEHILHGAR LSLRPAPPRA ENSTTRP00000005974/1-954 GGGPVSSWQR LGRGGILTFQ EAADAARVLA QEEHTLHGAR LSLRPAPPRA bmy_07586T0/1-1023 GGGPVSSWQR LGRGGILTFQ EAADAARVLA QEEHTLHGAR LSLRPAPPRA 101 150 ENSP00000325618/1-1025 PARLLLQGLP PGTTPQRLEQ HVQALLRASG LPVQPCCALA SPRPDRALVQ ENSBTAP00000012765/1-971 SARLLLQGLP PGTTPQLLEQ YVQALLCATG HPEQPCHALA SPRPDRALVQ BACU001470/1-881 PARLLLQGLS AGTGPRRLEQ YVQALLCAAG QPVQPCRALA SPRPDRSLVQ ENSTTRP00000005974/1-954 PSRLLLQGLS AGTGPHHLEQ YVQALLCAAG QPVQPCRALA SPRPDRALVQ bmy_07586T0/1-1023 PARLLLQGLS AGTGPQRLEQ YVQALLCAAG QPVQPCRALA SPRPDRALVQ 151 200 ENSP00000325618/1-1025 LPKPLSEA-- ---------- ---------- --DVRVLEEQ AQNLGLEGTL ENSBTAP00000012765/1-971 LPKPLSEA-- ---------- ---------- --EAGVLEVH SRALGLEGAE BACU001470/1-881 LPKPLSEA-- ---------- ---------- --EARVLEEH AQALSLEGAE ENSTTRP00000005974/1-954 LPKPLD-A-- ---------- ---------- --EARVLEEH AQSLGLKGAE bmy_07586T0/1-1023 LPKPLSEAGE RRDWGGRAFQ GRCPELTCTL PTEARLLEEH AQALSLEGAE 201 250 ENSP00000325618/1-1025 VSLARVPQAR AVRVVGDGAS VDLLLLELYL ENERRSGGGP LEDLQRLPGP ENSBTAP00000012765/1-971 VSLAWVPQAR AVRVVGGDPP ADLLLLELYL ENERRSGGGP LEGMHSLPGH BACU001470/1-881 VSLAWVPQAR AVRVVGGSPP ADLLLLELYL ENERRSGGGP LEGVRSLPGH ENSTTRP00000005974/1-954 VSLAWVPQAR AVRVVGGIPP ADLLLLELYL ENERRSGGGP LEGVRSLPGH bmy_07586T0/1-1023 VSLAWVPQAR AVRVVGGSPP ADLLLLELYL ENERRSGGGP LEGVRSLPGH 251 300 ENSP00000325618/1-1025 LGTVASFQQW QVAERVLQQE HRLQGSELSL VPHYDILEPE ELAENTSGGD ENSBTAP00000012765/1-971 LGTVVSFQHW RVAERVLQRD HRLQGSELKL VPHYDVLEPE ELAEDAGEGS BACU001470/1-881 LGTIASFQQW QVAERVLQRA HQLQGSELSL VPHYDVLEPE ELSEHTSGGN ENSTTRP00000005974/1-954 LGTIASFQQW QVAERVLQRA HQLQGSELIL VPHYDVLEPE ELSEHTSGGS bmy_07586T0/1-1023 LGTIASFQQW QVAERVLQRA HQLQGSELSL VPHYDVLEPE ELSEHTSGGN 301 350 ENSP00000325618/1-1025 HPSTQGPRAT KHALLRTGGL VTALQGAGTV TMGSGEEPGQ SGASLRTGPM ENSBTAP00000012765/1-971 CPGDLGPGAP RHVLQEAGGP AREQHYAGDV TLGSEEAPGQ SGASLSTGPQ BACU001470/1-881 RLAELGPGAP KHALLEAGGP AGAQNCAGNV TLGSEEAPGQ TGASLRTGPL ENSTTRP00000005974/1-954 RLAELGPGAP KHALLEAGGP ARAQNCAGNV TLGSEEAPGQ TGALLRTASL bmy_07586T0/1-1023 RLARLGPGAP KHALLEAGGP ARAQNCAGNV TLGSEEAPGQ TGASLRTGPL 351 400 ENSP00000325618/1-1025 VQGRGIMTTG SGQEPGQSGT SLRTGPMGSL GQAEQVSSMP MGSLEHEGLV ENSBTAP00000012765/1-971 WDS------- ---------- -------SSL APAGPVSSGP WGSSEEEGLG BACU001470/1-881 WDR------- ---------- -------SSL GQARPVSSGP LGSSEQEGLV ENSTTRP00000005974/1-954 T--------- ---------- -------GSL GQARPVSSRP VGSSEQEGLV bmy_07586T0/1-1023 WDR------- ---------- -------SSL GQARPVSSGP VGS--EEGLV 401 450 ENSP00000325618/1-1025 SLRPVGLQEQ EGPMSLGPVG SAGPVETSKG LLGQEGLVEI AMDSPEQEGL ENSBTAP00000012765/1-971 SRRTVG---- ---------- ---------- ---------- ---SP----- BACU001470/1-881 SPGPTG---- ---------- ---------- ---------- ---SP----- ENSTTRP00000005974/1-954 SPGPTG---- ---------- ---------- ---------- ---SP----- bmy_07586T0/1-1023 NPGPTG---- ---------- ---------- ---------- ---SP----- 451 500 ENSP00000325618/1-1025 VGPMEITMGS LEKAGPVSPG CVKLAGQEGL VEMVLLMEPG AMRFLQLYHE ENSBTAP00000012765/1-971 -DPVEIAMRS SEQVASVSQG PAGSPGQQGL VEMVLAMEPG AMRFIQLYHE BACU001470/1-881 -GPVEIAMES LEQVASMSLG PVGSPGQEGL VETVLPMELG AMRFIQLYHE ENSTTRP00000005974/1-954 -GPVEIAVES LEQVVSMSLG PVGSPGQEGL VETVLPMELG AMRFIQLYHE bmy_07586T0/1-1023 -GPVEIAVES LEQVASMSLG PVGSPGQEGL VETVLPMELG AMRFIQLYHE 501 550 ENSP00000325618/1-1025 DLLAGLGDVA LLPLEGPDMT GFRLCGAQAS CQAAEEFLRS LLGSISCHVL ENSBTAP00000012765/1-971 DLLTGLGDVA LFPLEGSDTT GFRLCGALAP CRAAKEFLQS LLGSVSCHML BACU001470/1-881 DLLAGLGDVA LFPLEGSDMT GFR------- ---------- ---------- ENSTTRP00000005974/1-954 DLLAGLGDVA LFPLEGSDTT GFRLCGALAP CQAAEEFLQS LLGSVSCHVL bmy_07586T0/1-1023 DLLAGLGDVA LFPLEGSDMT GFRLCGALAP CQAAEEFLQS LLGSXSGHVL 551 600 ENSP00000325618/1-1025 CLEHPGSARF LLGPEGQHLL QGLEAQFQCV FGTERLATAT LDTGLEE--- ENSBTAP00000012765/1-971 SLKHPGSARF LLSPEGQHLL RELEAQFQCV FRTEHLAGAV LDMDLEE--- BACU001470/1-881 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005974/1-954 SLKHPGSARF LLSPEGQHLL RGMEAQFQCV FGTERLARAA LDTDLGE--- bmy_07586T0/1-1023 SLKHPGSARF LLSPEGQRLL RGLEAQFQCV FGTERLARAA LDTDLGERPG 601 650 ENSP00000325618/1-1025 ---------- ----VDPTEA LPVLPGNAHT LWTPDSTGGD QEDVSLEEVR ENSBTAP00000012765/1-971 ---------- ----VGPTEA LQALPGLSST PWPPDDPDRD QENSGLEEVR BACU001470/1-881 ---------- ----VDPTEA LQALPGRSHT LWPPDNTDGA QENMSLEEVR ENSTTRP00000005974/1-954 ---------- ----VDPTEA LQVLPGHSHT LWPPESTDGG QENVSLEEVR bmy_07586T0/1-1023 RGMCPGGTGV LSQQVDPTEA LQALPGHSHT LWPPDNTDGD QENVNLEEVR 651 700 ENSP00000325618/1-1025 ELLATLEGLD LDGEDWLPRE LEEEGPQEQP EEEVTPGHEE EEPVAPSTVA ENSBTAP00000012765/1-971 ELLATLEG-- LDGEDWLPLE LGEEEPEGQP EEEVTIPRSG EEPLAPSTRE BACU001470/1-881 ELLAALEG-- LDGEDRLPLE LGEEEPEGQP EEEKTP-RAG EGPVAPSTGA ENSTTRP00000005974/1-954 ELLAALEA-- LDGEDWLPLE LGEEEPWGQP EEEKTP-RAG KGPVAPRTGV bmy_07586T0/1-1023 ELLAALEG-- RDGEDWLPLE LGEEEPEGQP EEEKTP-RAG EGPVAPSTRA 701 750 ENSP00000325618/1-1025 PRWLEEEAAL QLALHRSLEP QGQVAEQEEA AALRQALTLS LLEQPPLEAE ENSBTAP00000012765/1-971 PGWLQEEAEL QLALYRSLQP RGQAAEQEEA -ELQQALALS LLEPPPLSGE BACU001470/1-881 PGRLEEEAEL QLALYRSLEP QGQAAEREEA VALQRALALS LLEPPPLQEE ENSTTRP00000005974/1-954 PGRLQEEAEL QLALCRSLEP QGQVAKREEA VALQWALALS -LQPPPLEEE bmy_07586T0/1-1023 PGRLEEEAEL QLALYRSLEP QGQVAEREEA VALQRALALS LLEPPPLQEE 751 800 ENSP00000325618/1-1025 EPP--DGGTD GKAQLVVHSA FEQDVEELDR ALRAALEVHV QEETVGPWRR ENSBTAP00000012765/1-971 QELLWGQGPG GWAQLEVHAS FERDMDELDR ALEAALEVHL REELVGAPGC BACU001470/1-881 QELR-RGGPG SWAQLEVHAA FEQDMDELDR ALEAALEVHL REETVGPQGC ENSTTRP00000005974/1-954 PEPR-GGGPG GWAQLEVHAA FEQDMDELGR ALEAALEVHL REETVGPRGC bmy_07586T0/1-1023 QELR-GGGPG SWAQLEVHAA FEQDMDELDR ALEAALEVHL REEVVGPQGC 801 850 ENSP00000325618/1-1025 TLPAELRARL ERCHGVSVAL RGDCTILRGF GAHPARAARH LVALLAGPWD ENSBTAP00000012765/1-971 VLPAELCARL ERCHGVSVAL HGGHIVLRGF GVQPTHAAHH LAALLAGPRD BACU001470/1-881 VLPAELCARL ERRHGVSVAL RGDRTVLRGF GTQPTRAARH LAALQAGPWD ENSTTRP00000005974/1-954 VLPAELCARL ERRHGVSVAL RGDRTVLRGF GTQPTRAAHH LAALWAGPRD bmy_07586T0/1-1023 VLPAELCARL ERRHGVSVAL RGDRTVLRGF GTQPTRAARH LAALRAGPRD 851 900 ENSP00000325618/1-1025 QSLAFPLAAS GPT------- ---------- ---------- -LAGQTLKGP ENSBTAP00000012765/1-971 QSSAFPLAAS CST------- ---------- ---------- -LPQQRPKEP BACU001470/1-881 QSLAFPLAAS GPT------- ---------- ---------- -LPQQRPREP ENSTTRP00000005974/1-954 QSLASPLEAS GPT------- ---------- ---------- -LPQQRPREL bmy_07586T0/1-1023 QSLAFPLAAS GPTRESAARA GEGRVDRCPR HGPHPLSPCV SVPQQRPREP 901 950 ENSP00000325618/1-1025 WNNLERLAEN TGEFQEVVRA FYDTLDAARS SIRVVRVERV SHPLLQQQYE ENSBTAP00000012765/1-971 LGRLERLAES SSEFQAVVQA FCDTLDTAHG RIHVVRVERV LHPLLQQQYE BACU001470/1-881 LGRLECVAES SSEFQTVVQA FCDTLDAAHG RIRVVRVERV LHPLLQQQYE ENSTTRP00000005974/1-954 LGRLECVAES SSEFHTVVQA FYDTLDAAHG RIRVVQVERV LHPLLQQQYE bmy_07586T0/1-1023 LGRLECVAES SSEFQTVVQA FYDTLDAAHG RIRVVRVERV LHPLLQQQYE 951 1000 ENSP00000325618/1-1025 LYRERLLQRC ERRPVEQVLY HGTTAPAVPD ICAHGFNRSF CGRNATVYGK ENSBTAP00000012765/1-971 LHRERLEQCC E-RPAEQVLY HGTAMPTVPD ICAHGFNRSF CGRNGALYGQ BACU001470/1-881 LHRERLEQCC DRRPAEQVLY HGTSVATVPD ICAHGFNRSF CGRNGLHCGA ENSTTRP00000005974/1-954 LHRERLEQCC DRRPAEQVLY HGTSVATVPD ICAHGFNRSF CGRNGTLYGQ bmy_07586T0/1-1023 LHRERLEQCC DRRPAEQVLY HGTSVATVPD ICAHGFNRSF CGRNGTLYGQ 1001 1050 ENSP00000325618/1-1025 ------GVYF ARRASLSVQD RYSPPNADGH KAV----FVA RVLTGDYGQG ENSBTAP00000012765/1-971 ------GVYF AKRASLSVLD RYSPPDAEGH KAV----FVA RVLTGDYGQG BACU001470/1-881 RGGTALGLGW GKAMASAIGS DSLEVEPVCE EAMSGEDHEV RAVVEDGSNG ENSTTRP00000005974/1-954 ------GVYF AKRASLSVLD RYSPPDSEGH KAV----FVA RVLTGDYGQG bmy_07586T0/1-1023 ------GVYF AKRASLSVLD RYSPPDAEGH KAV----FVA RVLTGDYGQG 1051 1100 ENSP00000325618/1-1025 RRGLRAP--- ---------P LRGPGHVLLR YDSAVDCICQ PSIFVIFHDT ENSBTAP00000012765/1-971 QRGLRAP--- ---------P PRPAGHALLR YDSAVDCLHR PSIFVIFHDT BACU001470/1-881 GSGSPSPGDT LPWNLEKTQR SRLSGGGPGG NGSVLDPAER AVIRIAGNDA ENSTTRP00000005974/1-954 RRGLRAP--- ---------P PRPPGHALLR YDSAVDCLPR PSIFVIFHDT bmy_07586T0/1-1023 RRGLRAP--- ---------P PRPPGHALLR YDSAVDCLPR PSIFVIFHDT 1101 1150 ENSP00000325618/1-1025 QALPTHLITC EHVPRASPDD PSGLPGRSPD T-- ENSBTAP00000012765/1-971 QALPTHLITC KHKSRSLPED APALLSTSPA TWP BACU001470/1-881 EELR------ ---------- ----LSNS-- --- ENSTTRP00000005974/1-954 QALPTHLITC KHMSRSPPGD PPELLSNSPA T-- bmy_07586T0/1-1023 QALPTHLITC KHMSRSPPGD PPGLLSNSPA T--