KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:44 2014 Check: 00 .. Name: ENSP00000356297/1-1385 Len: 1557 Check: 8489 Weight: 1.00 Name: ENSBTAP00000012769/1-1380 Len: 1557 Check: 6676 Weight: 1.00 Name: ENSTTRP00000005819/1-1332 Len: 1557 Check: 9308 Weight: 1.00 Name: BACU017485/1-1403 Len: 1557 Check: 1879 Weight: 1.00 Name: bmy_02571T0/1-1431 Len: 1557 Check: 9498 Weight: 1.00 // 1 50 ENSP00000356297/1-1385 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012769/1-1380 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005819/1-1332 ---------- ---------- ---------- ---------- ---------- BACU017485/1-1403 MAGLSGLPPV RPQDWPAVDS MAGLCPVDAA LLLLGPHSWR GYHVHQLRLE bmy_02571T0/1-1431 -MEESQLSPK GRIQTSVLQS QDGIQTRD-- ---------- ---VHQLRLE 51 100 ENSP00000356297/1-1385 ---------- ---------- ------MELS DSDRPVSFGS TSSSASSRDS ENSBTAP00000012769/1-1380 ---------- ---------- ------MELS DSDRPVSFGS TSSSASSRDS ENSTTRP00000005819/1-1332 ---------- ---------- ------MELS DSDRPVSFGS TSSSASSRDS BACU017485/1-1403 VPSAVTQAPD PKTTARPPRC SQDLKAMELS DSDRPVSFGS TSSSASSRDS bmy_02571T0/1-1431 VPSAVTQAPD PKTTARPPRC SQDLKAMELS DSDRPVSFGS TSSSASSRDS 101 150 ENSP00000356297/1-1385 HGSFGSRMTL VSNSHMGLFN QDKEVGAIKL ELIPARPFSS SELQRDNPAT ENSBTAP00000012769/1-1380 HGSFGSRMTL VSSSHLGLFP QDKEAGAIKL ELMPARPFSS SELQTDR-AA ENSTTRP00000005819/1-1332 HGSFGSRMTL VSNSHLGLFP QDKEAGAIKL ELMPARPFSS SELPRDG-AA BACU017485/1-1403 HGSFGSRMTL VSNSHLGLFP QDKEAGAIKL ELMPARPFSS SELPRDG-AA bmy_02571T0/1-1431 HGSFGSRMTL VSNSHLGLFP QDKEAGAIKL ELRPARPFSS SELPRDG-AA 151 200 ENSP00000356297/1-1385 GQQNADEGSE RPPRAQWRVD SNGAPKTIAD SATSPKLLYV DRVVQEILET ENSBTAP00000012769/1-1380 GQQSTDEGGE RQPRAQRRVE ANGPTKTGAE SATSPKLLYV DRVVQEILET ENSTTRP00000005819/1-1332 AQQNTDQGSE RQPWAQHRVD TNGAAKTGAE SATSPKLLYV DRVVQEILET BACU017485/1-1403 GQQSTDQGSE RQPWAQHRVE ANGATKTGAE SATSPKLLYV DRVVQEILET bmy_02571T0/1-1431 GQQSTDQGSE SQPWAQHRVE TNGATKTGAE SATSPKLLYV DRVVQEILET 201 250 ENSP00000356297/1-1385 ERTYVQDLKS IVEDYLDCIR DQTKLPLGTE ERSALFGNIQ DIYHFNSELL ENSBTAP00000012769/1-1380 ERTYVQDLKS IVEDYLDCIR DQTKLPLGTD ERSALFGNIQ DIYHFNSELL ENSTTRP00000005819/1-1332 ERTYVQDLKS IVEDYLECIR DQMKLPLGAE ERSALFGNIQ DIYHFNSELL BACU017485/1-1403 ERTYVQDLKS IVE-----MS DALEL----- ---------- ---RVLSELL bmy_02571T0/1-1431 ERTYVQDLKS IVEDYLDCIR DQTKLPLGAE ERSALFGNIQ DIYHFNSELL 251 300 ENSP00000356297/1-1385 QDLENCENDP VAIAECFVSK SEEFHIYTQY CTNYPRSVAV LTECMRNKIL ENSBTAP00000012769/1-1380 QELENCENDP VAIAECFVSK SEEFHIYTQY CTNYPRSVAV LTECMRNKML ENSTTRP00000005819/1-1332 QDLENCENDP VAIAECFVSK SEEFHIYTQY CTNYPRSVAV LTECMRNKML BACU017485/1-1403 QDLENCENDP VAIAECFVSK SEEFHIYTQY CTNYPRSVAV LTECMRNKML bmy_02571T0/1-1431 QDLENCENDP VAIAECFVSK SEEFHIYTQY CTNYPRSVAV LTECMRNKML 301 350 ENSP00000356297/1-1385 AKFFRERQET LKHSLPLGSY LLKPVQRILK YHLLLHEIEN HLDKDTEGYD ENSBTAP00000012769/1-1380 AKFFRERQET LKHSLPLGSY LLKPVQRILK YHLLLHEIEN HLDKDTEGYD ENSTTRP00000005819/1-1332 AKFFRERQET LKHSLPLGSY LLKPVQRILK YHLLLHEIEN HLDKDTEGYD BACU017485/1-1403 AKFFRERQET LKHSLPLGSY LLKPVQRILK YHLLLHEIEN HLDKDTEGYD bmy_02571T0/1-1431 AKFFRERQET LKHSLPLGSY LLKPVQRILK YHLLLHEIEN HLDKDTEGYD 351 400 ENSP00000356297/1-1385 VVLDAIDTMQ RVAWHINDMK RKHEHAVRL- ---------- -QEIQSLLTN ENSBTAP00000012769/1-1380 VVLDAIDTMQ RVAWHINDMK RKHEHAVRL- ---------- -QEIQSLLTN ENSTTRP00000005819/1-1332 VVLDAIDTMQ RVAWHINDMK RKHEHAVRL- ---------- -QEIQSLLTN BACU017485/1-1403 VVLDAIDTMQ RVAWHINDMK RKHEHAVRL- ---------- -QEIQSLLTN bmy_02571T0/1-1431 VVLDAIDTMQ RVAWHINDMK RKHEHAVRLQ LLFNHRERSL FQEIQSLLTN 401 450 ENSP00000356297/1-1385 WKGPDLTSYG ELVLEGTFRI QRAKNERTLF LFDKLLLITK KRDDTFTYKA ENSBTAP00000012769/1-1380 WKGPDLTSYG ELVLEGTFRL QRAKNERTLF LFDKLLLITK KRDDTFTYKA ENSTTRP00000005819/1-1332 WKGPDLTSYG ELVLEGTFRL QRAKNERTLF LFDKLLLITK KRDDTFTYKA BACU017485/1-1403 WKGPDLTSYG ELVLEGTFRL QRAKNERTLF LFDKLLLITK KRDDTFTYKA bmy_02571T0/1-1431 WKGPDLTSYG ELVLEGTFRL QRAKNERTLF LFDKLLLITK KRDDTFTYKA 451 500 ENSP00000356297/1-1385 HILCGNLMLV EVIPKEPLSF SVFHYKNPKL QHTVQAKSQQ DKRLWVLHLK ENSBTAP00000012769/1-1380 HILCGNLMLV EVIPKEPLSF SVFHYKNPKL QHTVQAKSQQ DKRLWVLHLK ENSTTRP00000005819/1-1332 HILCGNLMLV EVIPKEPLSF SVFHYQNPKL QHTVQAKSQQ DKRLWVLHLK BACU017485/1-1403 HILCGNLMLV EVIPKEPLSF SVFHYQNPKL QHTVQAKSQQ DKRLWVLHLK bmy_02571T0/1-1431 HILCGNLMLV EVIPKEPLSF SVFHYQSPKL QHTVQAKSQQ DKRLWVLHLK 501 550 ENSP00000356297/1-1385 RLILENHAAK IPAKAKQAIL EMDAIHHPGF CYSPEGGTKA LFGSKEGSAP ENSBTAP00000012769/1-1380 RLILENHAAK IPAKAKQAIL EMDAIHYPGF CYSPEGET-- -CGSRNGSAP ENSTTRP00000005819/1-1332 RLILENHAAK IPAKAKQAIL EMDAVHYPGF CYSPEGETKA FCGSKDGSAS BACU017485/1-1403 RLILENHAAK IPA------- ---------- ---------- ---------- bmy_02571T0/1-1431 RLILENHAAK IPAKAKQAIL EMDAIHYPGF CYSPEGETKA FCGSKDGSAP 551 600 ENSP00000356297/1-1385 YRLRRKSEPS SRSHKVLKTS ETAQDIQKVS REEGSPQLSS ARPSPAQRNS ENSBTAP00000012769/1-1380 YRLRRKSEPS SRSHKVLKTS ETAQDIQKVS REEGSPQLTS AGPSPAQRNS ENSTTRP00000005819/1-1332 YRLRRKSEPS SRSHKVLKTS ETAQDIQKVS REEGSPQLTS AGPSPAQRNS BACU017485/1-1403 ---------- ---------- -------KVS REEGSPQLTS AGPSPAQRNS bmy_02571T0/1-1431 YRLRRKSEPS SRSHKVLKTS ETAQDIQKVS REEGSPQLTS AGPSPAQRNS 601 650 ENSP00000356297/1-1385 QPSSSTMISV LRAGGALRNI WTDHQIRQAL FPSRRSPQEN EDDEDDYQMF ENSBTAP00000012769/1-1380 QPSSSTILSV LRGGGAVRNI WTDHQIRQAL FPSRRS-QEN EEDEDDYQMF ENSTTRP00000005819/1-1332 QPSSSAIINV LRGGGAVRSI WTDHQIRQAL FPSRRSPQEN EEDEDDYQMF BACU017485/1-1403 QPSSSAIISV LRGGGAVRNI WTDHQIRQAL FPSRRSPQEN EEDEDDYQMF bmy_02571T0/1-1431 QPSSSAIISV LRGGGAIRNI WTDHQIRQAL FPSRRSPQEN EEDEDDYQMF 651 700 ENSP00000356297/1-1385 VPSFSSSDLN STRLCEDSTS SRPCSWHMGQ MESTETSSSG HRIVRRASSA ENSBTAP00000012769/1-1380 LPSFSSSDLN SAQLCEDGTS SRPCSWHMGQ IESSETSSSG HRIVRRASSA ENSTTRP00000005819/1-1332 LPSFSPSDLN SARLCEDSTS SRPCSWHMGQ VESSETPSSG HRVVRRASSA BACU017485/1-1403 LPSFSSSDLN SARLCEDSTS SRPCSWHVGQ VESSETPSSG HRVVRRASSA bmy_02571T0/1-1431 LPSFSSSDLN SARLCEDSTS SRPCSWHVGQ VESSETPSSG HKVVRRASSA 701 750 ENSP00000356297/1-1385 GESNTCPPEI GTSD------ -RTRELQNSP KTEGQEEMTP FGSSIELTID ENSBTAP00000012769/1-1380 GESNTCPPDI RTRDSGGSQY SSRRELQGDP KTEGQDGTTP YGSSIELTID ENSTTRP00000005819/1-1332 GESNTCPPEI GS---DSPQY SSRRELQNDP KTEGLDGMTP FGSSVELTID BACU017485/1-1403 GESNTCPPDI RTRDGDSSQY SSRRELQDDP KTEGRGGLTP FGSSIELTID bmy_02571T0/1-1431 GESNTCPSDI RTRDGDSSQY SSRRELQDDP QTEGRGGLTP FGSSIELTID 751 800 ENSP00000356297/1-1385 DIDHVYDNIS YEDLKLMVAK REEAESTPSK SARDSVRPKS TPELAFTKRQ ENSBTAP00000012769/1-1380 DIDHVYDNIS YEDLKLMVAK REDAEVSPQK PVRDSVRPKS TPELAFSKKP ENSTTRP00000005819/1-1332 DIDHVYDNIS YEDLKLMVAK REEAEAPPPK SARDSARPKS TPELAFS-RP BACU017485/1-1403 DIDHVYDNIS YEDLKLMVAK REEAEAPPPK SARDFARPKS TPELAFSKRP bmy_02571T0/1-1431 DIDHVYDNIS YEDLKLMVAK REEAEAPPPK SARDSARPKS TPELAFSKRP 801 850 ENSP00000356297/1-1385 AGH-SKGSLY AQTDGTLSGG EASSQSTHEL QAVEENIYDT IGLPDPPSLG ENSBTAP00000012769/1-1380 AGPEEESTLH PRRDGALPAG EAWNQSMHDL QVMEENVYDT IALPEAPSRD ENSTTRP00000005819/1-1332 ASP-EKSPLH PQRDGASPGR EAWNQSSREL QVVEENVYYT IGLPEAPSQD BACU017485/1-1403 AGP-EKSPLQ PRRDGAPPGR EAWNQSSREL QVVEENVYDT IGLPDAPSQD bmy_02571T0/1-1431 AGP-EKSPLH PQRDGVPPGR EAWNQSSREL QVVEENVYDT IGLPDAPSQD 851 900 ENSP00000356297/1-1385 FKCSSLKRAK RSTFLGLEAD FVCCDSLRPF VSQDSLQLSE DEAPYHQATP ENSBTAP00000012769/1-1380 FKGSSPKRSA RSTFLGLEAD LGCCDSLRAS ASQDSLQFSE DEAPYPPGSS ENSTTRP00000005819/1-1332 FKCSSLKRPM RSTFLGLEAD LGCCDSLRAS VSQDSLQFSE DDAPYPRDSS BACU017485/1-1403 FKCSSLKRPK RSTFLGLEAD LGCCDSLRAS VSQDSLQVSE DEAPYPPGPS bmy_02571T0/1-1431 FKCSSLKRPK RSTFLGLEAD LGCCDSLRAS VSQDSLQVSE DEAPYPPGPS 901 950 ENSP00000356297/1-1385 DHGYLSLLYD SPSGNLSMPH KPVSDKLSEE VDEIWNDLEN YIKKNEDKAR ENSBTAP00000012769/1-1380 DNDYLSLLYN SFGCNLALAD RSISDKLSEE VDEIWNDLEN YIKKNEVKAR ENSTTRP00000005819/1-1332 GNDYLSLFYN SFGCNLSIAD RSISDKLSEE VDEIWNDLEN YIKKNEVKAR BACU017485/1-1403 DNDYLSLFYN SFGCNLSIAD RSISDKLSEE VDEIWNDLEN YIKKNEVKAR bmy_02571T0/1-1431 DNDYLSLFYN SFGCNLSIAD RSISDKLSEE VDEIWNDLEN YIKKNEVKAR 951 1000 ENSP00000356297/1-1385 DRLLAAFPVS KDDVPDRLHA ESTPELSRDV GRSVSTLSLP ESQALLTPVK ENSBTAP00000012769/1-1380 NRLLAAFPVS KDDVQERPLA GSTPELS--- --ARSPLSLA AGRALLAPPA ENSTTRP00000005819/1-1332 DRLLAAFPVS KDDVQERPLA GSAPELG--- --AR-PTSLP AGRAPLVPPR BACU017485/1-1403 DRLLAAFPVS KDDVQERPLG GSAPELG--- --ARSPHPLP AGRARLVPPR bmy_02571T0/1-1431 DRLLAAFPVS KDDVQERPLG GSAPELG--- --ARSPHSLP AGRALLVPPR 1001 1050 ENSP00000356297/1-1385 SRAGRASRAN CPFEEDLISK EGSFMSLNRL SLASEMPLMD NPYDLANSGL ENSBTAP00000012769/1-1380 DRPGPAP--- CALDRDPASK DSSCLSLHRL SLASDLPPAE SPYDVAGGSL ENSTTRP00000005819/1-1332 DRPAGL---- CTLDLTPASK DSSCLSLHRL SLVSDLPPVE SPYDVASSSP BACU017485/1-1403 DGPGPAS--- CTLDLTPASK DGSCQSLHRL SLVSDLPPVE SPYDVAGSSL bmy_02571T0/1-1431 DGPGPVS--- CTLDLTPASK DGSCQSLHRL SVVSDLPPVE SPYDVAGSSL 1051 1100 ENSP00000356297/1-1385 SQTDPENPDL GMEATDKTKS RVFMMARQYS QKIKKANQLL KVKSLELEQP ENSBTAP00000012769/1-1380 SSADLENPEP GLDNVDKTRS RVFLMARQYS QKIKKANQLL KVKNPELEQT ENSTTRP00000005819/1-1332 SPADLKNSDP GMDTADKTRS RVFLMARQYS QKIKKANQLL KVKSPELEQP BACU017485/1-1403 SPADLENPDP GADNADKTRS RVLLMARQYS QKIKKANQLL KVKSPELEQP bmy_02571T0/1-1431 SPADLENPDP GADNADKTRS RVLLMARQYS QKIKKANQLL KVKSPELEQP 1101 1150 ENSP00000356297/1-1385 PASQHQKSMH KDLAAILEEK KQGGPAIG-- ---------- ---------- ENSBTAP00000012769/1-1380 LSSQPQKPAS KDLAAILEEK RQGGPAIG-- ---------- ---------- ENSTTRP00000005819/1-1332 PGSHVQKQVP RDLAAILEEK KQGGPAIG-- ---------- ---------- BACU017485/1-1403 PGSQLQKQVP RDLAAILEEK KQGGPAIGMS PALPFSFRGL GESCVLVLSI bmy_02571T0/1-1431 PGSQLQKQVP RDLAAILEEK KQGGPAIGMS PAPPFSFRGL GESRVLVLS- 1151 1200 ENSP00000356297/1-1385 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012769/1-1380 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005819/1-1332 ---------- ---------- ---------- ---------- ---------- BACU017485/1-1403 LSTDVIIEWT DSPDFSVWAL PLCQELALGV VRKEERPIHL LKLSSTFIEL bmy_02571T0/1-1431 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000356297/1-1385 ----ARIAEY SQLYDQIVFR ESPLKIQKDG WASPQESSLL RSVSPSQVHH ENSBTAP00000012769/1-1380 ----ARIAEY SQLYDQIVFR ETPFKTQKDG WASPQDPSNL SSASPSHAQQ ENSTTRP00000005819/1-1332 ----ARIAEY SQLYDQIVFR ETPFKTQKDG WASPQDSSNL SSASPSHTQH BACU017485/1-1403 SSRGARIAEY SQLYDQIVFR ETPFKTQKDG WASPQDSSNL SSASPSHTQH bmy_02571T0/1-1431 ----ARIAEY SQLYDQIVFR ETPFKTQKDG WASPQDASNL SSASPSHTQH 1251 1300 ENSP00000356297/1-1385 GSGDWLLHST YSNGELADFC LPPEQDLRSR YPTFEINTKS TPRQLSAACS ENSBTAP00000012769/1-1380 GSEDWLLHST YSNGELADFC PWPEQDLKSK YPILEINARS TPKQLSAACS ENSTTRP00000005819/1-1332 GSEDWLLHST YSNGELADFC PRPEQDSKSK YPTLEINTKS TPRQLSAACS BACU017485/1-1403 GSEDWLLHST YSNGELADFC PRPEQDLKSK YPTLEINTKS TPRQLSAACS bmy_02571T0/1-1431 GSKDWLLHST YSNGELADFC PWPEQDLKSK YPTLEINTKS TPRQLSAACS 1301 1350 ENSP00000356297/1-1385 VPSLQTSDPL PGSVQRCSVV VSQPNKENWC QDHLYNSLGR KGISAKSQPY ENSBTAP00000012769/1-1380 VPSLQTSDPL LGFVQRHSVV VSQPNKENSC QGHLYNSLGR KGISAKSQPY ENSTTRP00000005819/1-1332 VPSLQISEPL LGSVQRHSVV VSQPNKENSC QGHLYNSLGR KGISAKSQPY BACU017485/1-1403 VPSLQTSEPL LSSMQRHSVV VSQPNKENSC QGHLYNSLGR KGISAKSQPY bmy_02571T0/1-1431 VPSLQTSEPL LGSMQRHSVV VSQPNKENSC QGHLYNSLGR KGISAKSQPY 1351 1400 ENSP00000356297/1-1385 HRSQSSSSVL INKSMDSINY PSDVGKQQLL SLHRSSRCES HQDLLPDIAD ENSBTAP00000012769/1-1380 NRSQSSSSIL INKSADSINY PSGVAKQQPV SLHRSSRWES HQDLLPSIAD ENSTTRP00000005819/1-1332 NRSQSSSSIL INKSSDSINY PSEMGKKQLL SLHRSSRWES HQDLVPGIAD BACU017485/1-1403 NRSQSSSSIL INKSADSINY PSEIGKKQPL SLHRSSRWES HQDLVPGIAD bmy_02571T0/1-1431 NRSQSSSSIL INKSXDSINY PSEMGKKQPL SLHRSSRWES HQDLVPGIGD 1401 1450 ENSP00000356297/1-1385 SHQQGTEKLS DLTLQDSQKV VVVNRNLPLN AQIATQNYFS NFKETDGDED ENSBTAP00000012769/1-1380 SGQQGPEKRS DLTLQDSQKV LVVNRNLPLS AQMATQNYFS NFKETEGDED ENSTTRP00000005819/1-1332 SGQQGTEKHS DLTLQDSQKV LVVNRNLPLS AQIATQNYFS NFKETEGDED BACU017485/1-1403 SGQQGTEKHS DLTLQDSQKV LVVNRNLPLS AQIATQNYFS NFKETEGDED bmy_02571T0/1-1431 SGQQGTEKHS DLTLQDSQKV LVVNRNLPLS AQIATQNYFS NFKETEGDED 1451 1500 ENSP00000356297/1-1385 DYVEIKSEED ESELELSHNR RRKSDSKFVD ADFSDNVCSG NTLHSLNSPR ENSBTAP00000012769/1-1380 DYVEIKSEED ESELELSHSR RRKSDPKITD ADFADNVCSH TTSYSLNSPC ENSTTRP00000005819/1-1332 DYVEIKSEED E--------- ---------- ---------- ---------- BACU017485/1-1403 DYVEIKSEED E--------- ---------- ---------- ---------- bmy_02571T0/1-1431 DYVEIKSEED E--------- ---------- ---------- ---------- 1501 1550 ENSP00000356297/1-1385 TPKKPVNSKL GLSPYLTPYN DSDKLNDYLW RGPSPNQQNI VQSLREKFQC ENSBTAP00000012769/1-1380 TPKKPVSGKL GISPYLTPYN DPDKLNDYLW KGPSPNQQNI VQSLREKFQC ENSTTRP00000005819/1-1332 ----PISSKL G--PYLTSYN DSDKLNDYLW KGPPPNQQNI VQSLREKFQC BACU017485/1-1403 ----PISNKL G--PYLTSYN DSDKLNDYLW KGPSPNQQNI VQSLREKFQC bmy_02571T0/1-1431 ----PISDKL G--PYLTSYN DSDKLNDYLW KGPSPNQQNI VQSLREKFQC 1551 1600 ENSP00000356297/1-1385 LSSSSFA ENSBTAP00000012769/1-1380 LSSSSFA ENSTTRP00000005819/1-1332 LSSSSFA BACU017485/1-1403 LSSSSFA bmy_02571T0/1-1431 LSSSSFA