KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:47:46 2014 Check: 00 ..
Name: ENSP00000420357/1-243 Len: 343 Check: 7362 Weight: 1.00
Name: ENSBTAP00000012779/1-243 Len: 343 Check: 7009 Weight: 1.00
Name: bmy_06846T0/1-343 Len: 343 Check: 7292 Weight: 1.00
Name: BACU014240/1-195 Len: 343 Check: 57 Weight: 1.00
Name: ENSTTRP00000015690/1-243 Len: 343 Check: 6018 Weight: 1.00
//
1 50
ENSP00000420357/1-243 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000012779/1-243 ---------- ---------- ---------- ---------- ----------
bmy_06846T0/1-343 GPPPRPNESN AELGSRRRQA LGCGSAGLAW LWASGLSAGD SAPAPARQLP
BACU014240/1-195 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000015690/1-243 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000420357/1-243 ---------- ---------- -------MTD YGEEQRNELE ALESIYPDSF
ENSBTAP00000012779/1-243 ---------- ---------- -------MTD YGEEQRNELE ALESIYPDSF
bmy_06846T0/1-343 ALPARRGPGC RAPPGCLGDP WAAARAAMTD YGEEQRNELE ALESIYPDSF
BACU014240/1-195 ---------- ---------- -------MTD YGEEQRNELE ALESIYPDSF
ENSTTRP00000015690/1-243 ---------- ---------- -------MTD YGEEQRNELE ALESIYPDSF
101 150
ENSP00000420357/1-243 TVLSENPPSF TITVTSEAGE NDETVQTTLK FTYSEKYPDE APLYEIFSQE
ENSBTAP00000012779/1-243 TVLSENPPSF TITVTSEAGE NDETVQTTLK FTYSEKYPDE APLYEIFAQL
bmy_06846T0/1-343 TVLSENPPSF TITVTSEAGE NDETVQTTLK FTYSEKYPDE APLYEIFSQL
BACU014240/1-195 TVLSENPPSF TITVTSEAGE NDETVQTTLK FTYSEKYPDE APLYEIFSQL
ENSTTRP00000015690/1-243 TVLSENPPSF TITVTSEAGE NDETVQTTLK FTYSEKYPDE APLYEIFSQL
151 200
ENSP00000420357/1-243 NLEDNDVSDI LKLLALQ--- ---------- ---------- AEENLGMVMI
ENSBTAP00000012779/1-243 NLEDNDVADI LKLLALQ--- ---------- ---------- AEENLGMVMI
bmy_06846T0/1-343 NLDDNDVSDI LKLLALQHAS CKNIAESLEQ YTVFSQSYIN AEENLGMVMI
BACU014240/1-195 NLDDNDVSDI LKLLALQ--- ---------- ---------- ----------
ENSTTRP00000015690/1-243 NLDDNDVSDI LKLLALQ--- ---------- ---------- XXXXXXXXXX
201 250
ENSP00000420357/1-243 FTLVTAVQEK LNEIVDQIKT RREEEKKQKE KEAEEAEKQL FHGTPVTIEN
ENSBTAP00000012779/1-243 FTLVTAVQEK LNEIVDQIKT RREEEKKQKE KEAEEAEKQL FHGTPVTIEN
bmy_06846T0/1-343 FTLVTAVQEK LNEIVDQIKT RREEEKKQKE KEAEEAEKQL FHGTPVTIEN
BACU014240/1-195 ---------- ---------- ---------- --------QL FHGTPVTIEN
ENSTTRP00000015690/1-243 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXQL FHGTPVTIEN
251 300
ENSP00000420357/1-243 FLNWKAKFDA ELLEIKKKRM KEEEQAGKNK LSGKQLFETD HNLDTSDIQF
ENSBTAP00000012779/1-243 FLNWKAKFDA ELLEIKKKRM KEEEQAGKNK LSGRQLFETD HNLDTSDIQF
bmy_06846T0/1-343 FLSWKAKFDA ELLEIKKKRM KEEEQAGKNK LSGRQLFETD HNLDTSDIQF
BACU014240/1-195 FLSWKAKFDA ELLEIKKKRM KEEEQAGKNK LSGRQLFETD HNLDTSDIQF
ENSTTRP00000015690/1-243 FLSWKAKFDA ELLEIKKKRM KEEEQAGKNK LSGRQLFETD HNLDTSDIQF
301 350
ENSP00000420357/1-243 LEDAGNNVEV DESLFQEMDD LELEDDEDDP DYNPADPESD SAD
ENSBTAP00000012779/1-243 LEDAGNNVEV DESLFQEMDD LELEDDDDDP DYNPADRESD LTD
bmy_06846T0/1-343 LEDAGNNVEV DESLFQEMDD LELEDDEDDP DYNPADRESD LTD
BACU014240/1-195 LEDAGNNVEV DESLFQEMDD LELEDDEDDP DYSPADRESD LTD
ENSTTRP00000015690/1-243 LEDAGNNVEV DESLFQEMDD LELEDDEDDP DYNPADRESD LTD