KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:47 2014 Check: 00 .. Name: ENSP00000440273/1-671 Len: 1112 Check: 9561 Weight: 1.00 Name: ENSBTAP00000012781/1-689 Len: 1112 Check: 8612 Weight: 1.00 Name: ENSTTRP00000013869/1-630 Len: 1112 Check: 7401 Weight: 1.00 Name: bmy_22426T0/1-384 Len: 1112 Check: 3242 Weight: 1.00 Name: BACU012048/1-1051 Len: 1112 Check: 5019 Weight: 1.00 // 1 50 ENSP00000440273/1-671 MDPSYCPAHG FPSQDALWPL SSQQWSSAHY SEPAAGGCDG TEAMNGAGPG ENSBTAP00000012781/1-689 ---------- ---------- ---------- ---ASGGCDG TGAMNGAAP- ENSTTRP00000013869/1-630 ---------- ---------- ---------- ---------- ---MNGAAPG bmy_22426T0/1-384 ---------- ---------- ---------- ---------- ---------- BACU012048/1-1051 ---------- ---MSSSESV KSLTELVQQP CPPIETSKDG KPPEPSDPPA 51 100 ENSP00000440273/1-671 PAAAAPVPVP VPVPDWRQFC ELHAQAAAVD ---------- ---------- ENSBTAP00000012781/1-689 ------VPVP VPVPDWRQFC ELHAQAAAVD ---------- ---------- ENSTTRP00000013869/1-630 PAAAAPVPVP VPVPDWRQFC ELHAQAAAVD ---------- ---------- bmy_22426T0/1-384 ---------- ---------- ---------- ---------- ---------- BACU012048/1-1051 SDSQPTTPLP LSGHSALSIQ ELVAMSPELD TYGITKRVKE VLTDNNLGQR 101 150 ENSP00000440273/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012781/1-689 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013869/1-630 ---------- ---------- ---------- ---------- ---------- bmy_22426T0/1-384 ---------- ---------- ---------- ---------- ---------- BACU012048/1-1051 LFGETILGLT QGSVSDLLAR PKPWHKLSLK GREPFVRMQL WLNDPNNVEK 151 200 ENSP00000440273/1-671 ---------- -FAHKFCRFL RDNPAYDTPD AGASFSRHFA ANFLDVFGE- ENSBTAP00000012781/1-689 ---------- -FAHKFCRFL RDNPAYDTPD AGASFSRHFA ANFLDVFSE- ENSTTRP00000013869/1-630 ---------- -FAHKFCRFL RDNPAYDTPD AGASFSRHFA ANFLDVFSE- bmy_22426T0/1-384 ---------- ---------- ---------- ---------- ---------- BACU012048/1-1051 LMDMKRMEKK AYMKRRHSSV SDSQPCEPPS AGIDYSQGAS PQPQHQLKKP 201 250 ENSP00000440273/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012781/1-689 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013869/1-630 ---------- ---------- ---------- ---------- ---------- bmy_22426T0/1-384 ---------- ---------- ---------- ---------- ---------- BACU012048/1-1051 RVVLAPEEKE ALKRAYQQKP YPSPKTIEEL ATQLNLKTST VINWFHNYRY 251 300 ENSP00000440273/1-671 -------EVR RVLV-----A GPT-TRGAAV SAEAME---- ---------- ENSBTAP00000012781/1-689 -------EVR RVLV-----A GPAPPRGAAE PPDAME---- ---------- ENSTTRP00000013869/1-630 -------EVR RVLV-----A GPA-PRGAAE PPDAME---- ---------- bmy_22426T0/1-384 ---------- ---------- ---------- ---------- ---------- BACU012048/1-1051 GPALTQSRIR RELFIEEIQA GSQGQAGASD SPSARSGRAA PSSEGDSWRC 301 350 ENSP00000440273/1-671 ---------- ---------- ---------- ------PELA DTSAL----- ENSBTAP00000012781/1-689 ---------- ---------- ---------- ------PGPA GPPAL----- ENSTTRP00000013869/1-630 ---------- ---------- ---------- ------PEPS GTPAL----- bmy_22426T0/1-384 ---------- ---------- ---------- ---------- ---------- BACU012048/1-1051 AELQVHITEV TATAAEQRDL IARLEQDLST IQPIQRPDAE GAAELGLEKI 351 400 ENSP00000440273/1-671 ---------- ---KAAPYGH SRSSEDVSTH AATKARVRKG FSLRNMSL-- ENSBTAP00000012781/1-689 ---------- ---KAAPYGH SRSSEDVSAT AAAKARVRKG FSLRNMSL-- ENSTTRP00000013869/1-630 ---------- ---KAAPYGH SRSSEDVSAH AAAKARVRKG FSLRNMSL-- bmy_22426T0/1-384 ---------- ---------- ---------- ---------- ---------- BACU012048/1-1051 PEPIKEATAL FYGPSAPASS TLPEGQVDSL LSIISSQRER FRARNQELEA 401 450 ENSP00000440273/1-671 ---------- ---CVVDGVR ---------- ---------- ---------- ENSBTAP00000012781/1-689 ---------- ---CVVDGVR ---------- ---------- ---------- ENSTTRP00000013869/1-630 ---------- ---CVVDGVR ---------- ---------- ---------- bmy_22426T0/1-384 ---------- ---------- ---------- ---------- ---------- BACU012048/1-1051 ENRLAQHTIQ ALQSELDSLR ADNIKLFEKI KFLQSYPGRG GGSDDTELRY 451 500 ENSP00000440273/1-671 -DMWHRRASP EPDAA--AAP RTAEPRDKWT R------RLR LSRTLAAKVE ENSBTAP00000012781/1-689 -DMWHRRASP EPGAA----E PPAEPRDKWM R------RLR LSRTLAAKVQ ENSTTRP00000013869/1-630 -DMWHRRSSP EPDAAPRAAE PPAEPRDKWT R------RLR LSRTLAAKVE bmy_22426T0/1-384 ---------- ---------- ---------- ---------- ---------- BACU012048/1-1051 STQYEERLDP FSSFSKRERQ RKYLSLSPWD KATLSMGRLV LSNKMARTIG 501 550 ENSP00000440273/1-671 LVDIQREGAL RFMVADDAAA GSGGSAQWQK CRLLLRRAVA EERFRLEFFV ENSBTAP00000012781/1-689 LVDIQREGAL RFMVADDAAS GPGGAAQWQK CRLLLRRAVA GERFRLEFFV ENSTTRP00000013869/1-630 LLDIQREGAL RFMVADDAAA GPGGAAQWQK CRLLLRRAVA GERFRLEFFV bmy_22426T0/1-384 ---------- ---------- ---------- ---------- ---------- BACU012048/1-1051 FFYTLFLHCL VFLVLYKLAW SE--SVERDC ATFCAKKAVA GERFRLEFFV 551 600 ENSP00000440273/1-671 PPKASRPKVS IPLSAIIEVR TTMPLEMPEK DNTFVLKVEN GAEYILETID ENSBTAP00000012781/1-689 PPKASRPKVS IPLSAIIEVR TTMPLEMPEK DNTFVLKVEN GAEYILETID ENSTTRP00000013869/1-630 PPKASRPKVS IPLSAIIEVR TTMPLEMPEK DNTFVLKVEN GAEYILETID bmy_22426T0/1-384 ---------- ---------- --MPLEMPEK DNTFVLKVEN GAEYILETID BACU012048/1-1051 PPKASRPKVS IPLSAIIEVR TTMPLEMPEK DNTFVLKVEN GAEYILETID 601 650 ENSP00000440273/1-671 SLQKHSWVAD IQGCVDPGLW PGDLEGSWTR -SCLHPKRAS EHWELGRDGS ENSBTAP00000012781/1-689 SLQKHSWVAD IQGCVDPGLC RFRVPRPGA- -APLANGVRR HPPHIPEVVL ENSTTRP00000013869/1-630 SLQKHSWVAD IQGCVDPGXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_22426T0/1-384 SLQKHSWVAD IQGCXDPGDS EEDADLPCAR GSCLASRVAS CSCXLLTDAA BACU012048/1-1051 SLQKHSWVAD IQGCVDPGDS EEDADLPCAR GSCLASRVTS CSCELLTDAA 651 700 ENSP00000440273/1-671 ESPKGWG-PG AVAHICWSRT PDL--KR--- ---------- ---------- ENSBTAP00000012781/1-689 IPPLPPSQPS APHTLCLTPV KKILTERGTK GQNQGDGDKD TLSFSPLCAS ENSTTRP00000013869/1-630 XXXXXXXXXX XXXXXXXXXX XXXXXXX--- ---------- ---------- bmy_22426T0/1-384 DLPRPLETTA AVVTAPHSRA RDAVGES--- ---------- ---------- BACU012048/1-1051 DLPRPLETTA AVVTAPHSRA RDAVGES--- ---------- ---------- 701 750 ENSP00000440273/1-671 ---------- ----HLSSHI YLFVPLSPSP HVPHTVIPT- ------SGEQ ENSBTAP00000012781/1-689 VYLIHLFSVI QRASYLQKPN KLIKMTHPCS ASCGPSVPTP LTLPSSAAEE ENSTTRP00000013869/1-630 ---------- ----XXXXXX XXXXXXXXXX XXXXXXXXX- ------AVED bmy_22426T0/1-384 ---------- ----LVHVPL ETFLETLESP GGSGSDSNN- ------TVED BACU012048/1-1051 ---------- ----LVHVPL ETFLETLESP GGSGSDSNN- ------TVED 751 800 ENSP00000440273/1-671 GAETDPEAEP ELELSDYPWF HGTLSRVKAA QLVLAGGPRN HGLFVIRQSE ENSBTAP00000012781/1-689 AAEPEAQAEA ELELSDYPWF HGTLSRVKAA QLVLAGGPRN HGLFVIRQSE ENSTTRP00000013869/1-630 GAEPEPEAEP ELELSDYPWF HGTLSRVKAA QLVLAGGPRS HGLFVIRQSE bmy_22426T0/1-384 GAEPEPEAEP ELELSDYPWF HGTLSRVKAA QLVLAGGPRS HGLFVIRQSE BACU012048/1-1051 GAEPEPEAEP ELELSDYPWF HGTLSRVKAA QLVLAGGPRS HGLFVIRQSE 801 850 ENSP00000440273/1-671 TRPGEYVLTF NFQGKAKASH LRLSLNGHGQ CHVQHLWFQS VLDMLRHFHT ENSBTAP00000012781/1-689 TRPGEYVLTF NFQGKAK--H LRLSLNGHGQ CHVQHLWFQS VLDMLRHFHT ENSTTRP00000013869/1-630 TRPGEYVLTF NFQGKAK--H LRLSLNGHGQ CHVQHLWFQS VLDMLRHFHT bmy_22426T0/1-384 TRPGEYVLTF NFQGKAK--H LRLSLNGHGQ CHVQHLWFQS VLDMLRHFHT BACU012048/1-1051 TRPGEYVLTF NFQGKAK--H LRLSLNGHGQ CHVQHLWFQS VLDMLRHFHT 851 900 ENSP00000440273/1-671 HPIPLESGGS ADITLRSYVR AQDPPP---- --------EP ---------G ENSBTAP00000012781/1-689 HPIPLESGGS ADITLRSYVR AQGPPPGR-- LYPRLSLGDP ---------G ENSTTRP00000013869/1-630 HPIPLESGGS ADITLRSYVR AQDPPPXX-- ---------- ---------X bmy_22426T0/1-384 HPIPLESGGS ADITLRSYVR AQGPPPGKTP LPGPCKQTDP ---------G BACU012048/1-1051 HPIPLESGGS ADITLRSYVR AQGPPPGKTP LPGPCKQTAA RQKRGRAVMA 901 950 ENSP00000440273/1-671 PTPPAAPASP ACWSDSPGQH YFSSLAAAAC ---------- ---------- ENSBTAP00000012781/1-689 PSPSAAPPPP ACWSEPAGQH YFSSLAAAAC ---------- ---------- ENSTTRP00000013869/1-630 XXXXXAPAPP -CWSEPAGQH YFSSLAAAAC ---------- ---------- bmy_22426T0/1-384 PSPSAAPAPP ACWSEPAGQH YFSSLAAAAC ---------- ---------- BACU012048/1-1051 SSAASSVRPP RPKKEPQALV IPKNAAEEQK LKLERLMKNP DKTVPIPEKM 951 1000 ENSP00000440273/1-671 -------PPA SPSDAAGASS SSASSSSAAS ---------- ----GPAPPR ENSBTAP00000012781/1-689 -------PPA SPSEAGGASS SSASSSSAAS ---------- ----VPGAPR ENSTTRP00000013869/1-630 -------PPA SPSEAGGASS SSASSSSAAS ---------- ----VPGASR bmy_22426T0/1-384 -------PPA SPSEAGGASS SSASSSSAAS ---------- ----VPGASR BACU012048/1-1051 SEWAPRPPPE FVRDVMGSSA GAGSGEFHVY RHLRRREYQR QDYMDAMAEK 1001 1050 ENSP00000440273/1-671 P-VEGQLSA- ---------- ---------- ---------- ---------- ENSBTAP00000012781/1-689 PAAEGPLSA- ---------- ---------- ---------- ---------- ENSTTRP00000013869/1-630 P-VEGPLSA- ---------- ---------- ---------- ---------- bmy_22426T0/1-384 P-AEGPLSA- ---------- ---------- ---------- ---------- BACU012048/1-1051 PLLDPQVSVV LLQLLLNSSE EFQQKLDAEF QKRLEKNKIA AEEQTAKRRK 1051 1100 ENSP00000440273/1-671 RSRSNSAERL LEAVAATAAE EPPEA----- A-----PG-- RARAVENQYS ENSBTAP00000012781/1-689 RSRSNSAERL LEA-AGGGAE EPPEAGSGEG A-----RG-- HTRAVENQYS ENSTTRP00000013869/1-630 RSRSNSAERL LEA-AGGGAD EPPET----- A-----PG-- RTRAVENQYS bmy_22426T0/1-384 RSRSNSAERL LEA-AGGGAD EPPEAGPGEG A-----RG-- RTRAVENQYS BACU012048/1-1051 KRQKLKEKKL LAKKMKLEQK KQKEGYAGDC AVPWAPPGLE ALRPCDNSSS 1101 1150 ENSP00000440273/1-671 FY-------- -- ENSBTAP00000012781/1-689 FY-------- -- ENSTTRP00000013869/1-630 FY-------- -- bmy_22426T0/1-384 FY-------- -- BACU012048/1-1051 KALVPVGPGM LE