KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:47 2014 Check: 00 .. Name: ENSP00000225235/1-775 Len: 779 Check: 5433 Weight: 1.00 Name: ENSBTAP00000012783/1-761 Len: 779 Check: 5005 Weight: 1.00 Name: ENSTTRP00000012580/1-739 Len: 779 Check: 7197 Weight: 1.00 Name: bmy_08229T0/1-427 Len: 779 Check: 273 Weight: 1.00 Name: BACU020060/1-713 Len: 779 Check: 6428 Weight: 1.00 // 1 50 ENSP00000225235/1-775 MVGPEDAGAC SGRNPKLLPV PAPDPVGQDR KVIRATGGFG GGVGAVEPPE ENSBTAP00000012783/1-761 MVGPEDAGGC SARNPKLLLL PAPDSAGLDG KMIRATGGFG GGVGAVEPP- ENSTTRP00000012580/1-739 ---------- ---------- ------GLDG KMIRATDGFG GGAGAVETPE bmy_08229T0/1-427 ---------- ---------- ---------- ---------- ---------- BACU020060/1-713 ---------- ---------- ------GLDG KMIRATGGFG GGAGAVETPE 51 100 ENSP00000225235/1-775 EADEEEEADE EEETPPRQLL QRYLAAAGEQ LEPGLCYCPL PAGQAGAPPP ENSBTAP00000012783/1-761 --EEEEE--E EETPPPQQLL QRYLAAAGGQ LEPGLCYCPL PAGHSCAPPP ENSTTRP00000012580/1-739 EQEEEEE--E EETPPPQQLV RRYLAETGGQ LEPGLCYCPL PAGQPRVLPR bmy_08229T0/1-427 ---------- ---------- ---------- -------MPL LA-------- BACU020060/1-713 EEEEEEE--E EETPPPQQLL RRYLAATGGQ LEPGLCYCPL PAGQPRVLPR 101 150 ENSP00000225235/1-775 SAAPRSDACL LGSGSKHRGA EVADGRAPRH EGMTNGDSGF LPGRDCRDLE ENSBTAP00000012783/1-761 SAASRSDACQ PDAGSKHRDA EAADAGSARH GGMTNGDSGF LLGQDCRD-- ENSTTRP00000012580/1-739 SAAPHSDACL PDAGSKHRGA EAADVRAARH GGMTNGDSGF LPGPDYRD-- bmy_08229T0/1-427 ---------- ---------- ---------- ---------- ---------- BACU020060/1-713 SAAPHSDAWG FPGGAVVRNP PA-------- ---NVGDKGS SPG------- 151 200 ENSP00000225235/1-775 EARGLARAGG RESRRRRPYG RLRLEGPGDE DADGAGSPSD WASPLEDPLR ENSBTAP00000012783/1-761 ----LARAGS REPCHR---- RLRPDGPGDE GADGAGILSD WAAPLEDPLR ENSTTRP00000012580/1-739 ----LAHAGG REPRHR---- RLRPEGPGDE GADGAGSPSD WAAPLEDPLR bmy_08229T0/1-427 ---------- ---------- ---------- ---------- ---------- BACU020060/1-713 --------GG RSHMPR---- --------SS EADAPQLPSL RSRARQPQLL 201 250 ENSP00000225235/1-775 SCCLVAADAQ EPEGAGSDSG DSPASSCSS- SEDSEQRGVG AGGPEEGAPP ENSBTAP00000012783/1-761 SCCLEAADPE EPEGEGSGVR DSSASDGSG- SEDLERLGAG AGGSEEAASP ENSTTRP00000012580/1-739 SCCLAAADAK RPEDAGSGSG GSPASSGSG- SEDLEQPGAG PGGPEEGASP bmy_08229T0/1-427 ---------- ---------- ---------- ---------- ---------- BACU020060/1-713 SLRATTTEAR VPRAPVAASG GHSSSRCAGL SLSWPLLLRS TGSRRAGSVV 251 300 ENSP00000225235/1-775 ATSAERTNG- -GAEPRLGFS DIHFNSRNTF QVSRGQSARD HLPPAGPPVP ENSBTAP00000012783/1-761 VTSAERTSGG AGAEPRVGFS DVHWNSRNTF EVSRCQSARD HLPPAGAPVS ENSTTRP00000012580/1-739 VTSAERTSGG AGAESRLVFS DVHLNSRNTF EVSRHQSARD HLPPSAPPVP bmy_08229T0/1-427 ---------- ---------- ---------- ---------- ---------- BACU020060/1-713 VAHGPSCSVA CGTFPDQGSN PCPLHWQAES QPLRHQGSPR IFHPSPSPPP 301 350 ENSP00000225235/1-775 LPAAEQGPAG ASARARRSGG FADFFT-RNL FPKRTKELKS VVHSAPGWKL ENSBTAP00000012783/1-761 LPAAEEGLAG TSARARRSGG FADFFA-RNL FPKRTKELKS VVHSAPGWKL ENSTTRP00000012580/1-739 SPAAEQGPAG TSARARRSGG FADFFA-RNL FPKRTKELKS VVHSAPGWKL bmy_08229T0/1-427 -------PPG M--------- ---FFAILSV Y--------- ---------- BACU020060/1-713 LWQPQVCSPC LSSLVTRNTI HVTFLCFRNL FPKRTKELKS VVHSAPGWKL 351 400 ENSP00000225235/1-775 FGKVPPRENL QKTSKIIQQE YEARTGRTCK PPPQSSRRKN FEFEPLSTTA ENSBTAP00000012783/1-761 FGKVPPRENL QKTSKIIQQE YEARIGRACK PPPQSSRRKN FEFEPLSTTA ENSTTRP00000012580/1-739 FGKVPPRENL QKTSKIIQQE YEARTGRTCK PPPQSSRRKN FEFEPLSTTA bmy_08229T0/1-427 ---------- ---------E YEARTGRTCK PPPQSSRRKN FEFEPLSTTA BACU020060/1-713 FGKVPPRENL QKTSKIIQQE YEARTGRTCK PPPQSSRRKN FEFEPLSTTA 401 450 ENSP00000225235/1-775 LILEDRPSNL PAKSVEEALR HRQEYDEMVA EAKKREIKEA HKRKRIMKER ENSBTAP00000012783/1-761 LILEDRPSNL PAKSVEEALR HRQEYDEMVA EAKKREIKEA HKRKKIMKER ENSTTRP00000012580/1-739 LILEDRPSNL PAKSVEEALR HRQEYDEMVA EAKKREIKEA HKRKKIMKER bmy_08229T0/1-427 LILEDRPSNL PAKSVEEALR HRQEYDEMVA EAKKREIKEA HKRKKIMKER BACU020060/1-713 LILEDRPSNL PAKSVEEALR HRQEYDEMVA EAKKREIKEA HKRKKIMKER 451 500 ENSP00000225235/1-775 FKQEENIASA MVIWINEILP NWEVMRSTRR VRELWWQGLP PSVRGKVWSL ENSBTAP00000012783/1-761 FKQEESIASA MVIWINEILP NWEVMRSTRR VRELWWQGLP PSVRGKVWSL ENSTTRP00000012580/1-739 FKQEENIASA MVIWINEILP NWEVMRSTRR VRELWWQGLP PSVRGKVWSL bmy_08229T0/1-427 FKQEENIASA MVIWINEILP NWEVMRSTRR VRELWWQGLP PSVRGKVWSL BACU020060/1-713 FKQEENIASA MVIWINEILP NWEVMRSTRR VRELWWQGLP PSVRGKVWSL 501 550 ENSP00000225235/1-775 AVGNELNITP ELYEIFLSRA KERWKSFSET SSENDTEGVS VADREASLEL ENSBTAP00000012783/1-761 AVGNELNITP ELYEIFLSRA KERWKSFSET SSENDVEGVS VADREASLEL ENSTTRP00000012580/1-739 AVGNELNITP ELYEIFLSRA KERWKSFSET NSENDVEGVS VADREASLEL bmy_08229T0/1-427 AVGNELNITP ELYEIFLSRA KERWKSFSET NSENDVEGVS VADREASLEL BACU020060/1-713 AVGNELNITP ELYEIFLSRA KERWKSFSET NSENDVEGVS VADREASLEL 551 600 ENSP00000225235/1-775 IKLDISRTFP SLYIFQKGGP YHDVLHSILG AYTCYRPDVG YVQGMSFIAA ENSBTAP00000012783/1-761 IKLDISRTFP SLYIFQKGGP YHDVLHSILG AYTCYRPDVG YVQGMSFIAA ENSTTRP00000012580/1-739 IKLDISRTFP SLYIFQKGGP YHDVLHSILG AYACYRPDVG YVQGMSFIAA bmy_08229T0/1-427 IKLDISRTFP SLYIFQKGGP YHDVLHSILG AYTCYRPDVG YVQGMSFIAA BACU020060/1-713 IKLDISRTFP SLYIFQKGGP YHDVLHSILG AYTCYRPDVG YVQGMSFIAA 601 650 ENSP00000225235/1-775 VLILNLEEAD AFIAFANLLN KPCQLAFFRV DHSMMLKYFA TFEVFFEENL ENSBTAP00000012783/1-761 VLILNLEEAD AFIAFANLLN KPCQLAFFRV DHSMMLKYFA TFEVFFEENL ENSTTRP00000012580/1-739 VLILNLEEAD AFIAFANLLN KPCQLAFFRV DHSMMLRYFA TFEVFFEENL bmy_08229T0/1-427 VLILNLEEAD AFIAFANLLN KPCQLAFFRV DHSMMLRYFA TFEVFFEENL BACU020060/1-713 VLILNLEEAD AFIAFANLLN KPCQLAFFRV DHSMMLRYFA TFEVFFEENL 651 700 ENSP00000225235/1-775 SKLFLHFKSY SLTPDIYLID WIFTLYSKSL PLDLACRVWD VFCRDGEEFL ENSBTAP00000012783/1-761 SKLFLHFKSY SLTPDIYLID WIFTLYSKSL PLDLACRVWD VFCRDGEEFL ENSTTRP00000012580/1-739 SKLFLHFKSY SLTPDIYLID WIFTLYSKSL PLDLACRVWD VFCRDGEEFL bmy_08229T0/1-427 SKLFLHFKSY SLTPDIYLID WIFTLYSKSL PLDLACRVWD VFCRDGEEFL BACU020060/1-713 SKLFLHFKSY SLTPDIYLID WIFTLYSKSL PLDLACRVWD VFCRDGEEFL 701 750 ENSP00000225235/1-775 FRTGLGILRL YEDILLQMDF IHIAQFLTKL PEDITSEKLF SCIAAIQMQN ENSBTAP00000012783/1-761 FRTGLGILRL YEDILLQMDF IHIAQFLTKL PEDITSEKLF SCIAAIQMQN ENSTTRP00000012580/1-739 FRTGLGILRL YEDILLQMDF IHIAQFLTKL PEDITSEKLF TCIAAIQMQN bmy_08229T0/1-427 FRTGLGILRL YEDILLQMDF IHIAQFLTKL PEDITSEKLF TCIAAIQMQN BACU020060/1-713 FRTGLGILRL YEDILLQMDF IHIAQFLTKL PEDITSEKLF TCIAAIQMQN 751 800 ENSP00000225235/1-775 STKKWTQVFA SVMKDIKEGD KNSSPALKS ENSBTAP00000012783/1-761 STKKWTQVFS SVMKDIKEGD -NNSPALKS ENSTTRP00000012580/1-739 STKKWTQVFA SVMKDIKEGD KNNSPALKS bmy_08229T0/1-427 STKKWTQVFA SVMKDIKEGD KNNSPALKS BACU020060/1-713 STKKWTQVFA SVMKDIKEGD KNNSPALKS