KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:48 2014 Check: 00 .. Name: ENSP00000326003/1-529 Len: 550 Check: 8712 Weight: 1.00 Name: bmy_03005T0/1-338 Len: 550 Check: 1592 Weight: 1.00 Name: ENSBTAP00000012785/1-533 Len: 550 Check: 7900 Weight: 1.00 Name: BACU013704/1-532 Len: 550 Check: 4224 Weight: 1.00 Name: ENSTTRP00000012667/1-489 Len: 550 Check: 4419 Weight: 1.00 // 1 50 ENSP00000326003/1-529 MFPLTEENKH VAQLLLNTGT CPRCIFRFCG VDFHAPYKLP YKELLNELQK bmy_03005T0/1-338 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012785/1-533 MFPLTVENKH VAQLLLSTGT CPRCIFRFCG VDFHAPYKLP YKELLRELQK BACU013704/1-532 MFPLTVENKH VAQLLLSTGT CPRCIFRFCG VDFHAPYKLP CKELLNELQK ENSTTRP00000012667/1-489 ---------- ---------- ---------- ---------- --ELLNELQK 51 100 ENSP00000326003/1-529 FLETEKDELI LEVMNPPPKK IRLQELEDSI ---DNLSQNG EGRISVSHVG bmy_03005T0/1-338 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012785/1-533 FLEAEEDELV SEVPNPPPKK IRLQEPEDQI DGMDSLSQNG EGKLSVTEDG BACU013704/1-532 FLETEKDELV SEVPNPPPKK IRLQELEDGI DGMDNLSQNG EGKTSIIEDG ENSTTRP00000012667/1-489 FLETEKDELI SEVPNPPPKK IRLQELEDGI DGMDNLSQNG EGKISIIEDG 101 150 ENSP00000326003/1-529 STASKNSNLN VCNVCLGILQ EFCEKDFIKK VCQKVEASGF EFTSLVFSVS bmy_03005T0/1-338 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012785/1-533 SSSSKNSNLN VCNVCLGILQ DFCEKEFIKK VCQKVEASGF EFTNLVLSVS BACU013704/1-532 SIASKNSNLN VCNVCLGILQ DFCEKEFIKK VCQKVEASGF EFTNLVLSIS ENSTTRP00000012667/1-489 SIASKNSNLN VCNVCLGILQ DFCEKEFIKK VCQKVEASGF EFTNLVLSIS 151 200 ENSP00000326003/1-529 FPPQLSVREH AAWLLVKQEM GKQSLSLGRD DIVQLKEAYK WITHPLFSEE bmy_03005T0/1-338 ---------- ---------M GKQSLSLGRN DIVQLKEAYK WITHPLFSEE ENSBTAP00000012785/1-533 FPPQLSVREH AAWLLVKQEM GKQSLSLGRN DIVQLKEAYK WITHPLFSEE BACU013704/1-532 FPPQLSVREH AAWLLVKQEM GKQSLSLGRN DIVQLKEAYK WITHPLFSEE ENSTTRP00000012667/1-489 FPPQLSVREH AAWLLVKQEM GKQSLSLERN DTVQLKEAYK WITHPLFSEE 201 250 ENSP00000326003/1-529 LGVPIDGKSL FEVSVVFAHP ETVEDCHFLA AICPDCFK-P AKNKQSVFTR bmy_03005T0/1-338 LGVPIDGKSL FEVSVVFAHP ETVEDCHFLR VICPDCFK-P AKNKKSVFTR ENSBTAP00000012785/1-533 LGVPIDGKSL FEVSVVFAHP ETVEDCHFLR AICPDCFKLP ASNNRSVFTR BACU013704/1-532 LGVPIDGKSL FEVSVVFAHP ETVEDCHFLR VICPDCFK-P AKNKKSVFTR ENSTTRP00000012667/1-489 LGVPIDGKSL FEVSVVFAHP ETVEDCHFLR AICPDCFK-P AKNKQSVFTR 251 300 ENSP00000326003/1-529 MAVMKALNKI KEEDFLKQFP CPPNSPKAVC AVLEIECAHG AVFVAGRYNK bmy_03005T0/1-338 MAVMKALNKI KEEDFRKQFP CPPNSPKAVC SVVEIECAHG AVFVAG---- ENSBTAP00000012785/1-533 MAVMKALNKI KEEDFCKQFP CPPNSPKAVC TVLEIECAHG AVFVAGRYNK BACU013704/1-532 MAVMKALNKI KEEDFCKQFP CPPNSPKAVC SVVEIECAHG AVFVAGRYNK ENSTTRP00000012667/1-489 MAVMK-LNKI KEEDFRKQFP CPPNSPKAVC SVVEIECAHG AVFVAGRYNK 301 350 ENSP00000326003/1-529 YSRNLPQTPW IIDGERKLES SVEELISDHL LAVFKAESFN FSSSGREDVD bmy_03005T0/1-338 ---------- ---------- ---------- --------FN FSSSGREDVD ENSBTAP00000012785/1-533 YSRNLPQTPW IIDGERKLES SVEELISDHL LKVFKAESFN FSSSGREDVD BACU013704/1-532 YSRNLPQTPW IIDGERKLDS SVEELISDHL LTVFKAESFN FSSSGREDVD ENSTTRP00000012667/1-489 YSRNLPQTPW IIDGERKLDS SVEELISDHL LTVFKAESFN FSSSGREDVD 351 400 ENSP00000326003/1-529 VRTLGNGRPF AIELVNPHRV HFTSQEIKEL QQ-------K INNSSNKIQV bmy_03005T0/1-338 VRTLGNGRPF AIELVNPHRV HFTSQEIKEL QQVNHFMTWK LSCFCNSVTE ENSBTAP00000012785/1-533 VRTLGNGRPF AIELVNPHRV HFTSQEIKEL QQ-------K INNSSNKIQV BACU013704/1-532 VRTLGNGRPF AIELVNPHRV HFTSQEIKEL QQ-------K INNSSNKIQV ENSTTRP00000012667/1-489 VRTLGNGRPF AIELVNPHRV HFTSQEIKEL QQ-------K INNSSNKIQV 401 450 ENSP00000326003/1-529 RDLQLV---- ------TREA IGHMKEGEEE KTKTYSALIW TNKAIQKKDI bmy_03005T0/1-338 LELLIVFLSL ILQKINNSEA IGHMKEGEEE KTKTYSALIW TNKAIQRKDI ENSBTAP00000012785/1-533 RDLQLV---- ------TREA IGHMKEGEEE KTKTYSALIW TNKAIQRKDI BACU013704/1-532 RDLQLV---- ------TREA IGHMKEGEEE KTKTYSALIW TNKAIQRKDI ENSTTRP00000012667/1-489 RDLQLV---- ------TREA IGHMKEGEEE KTKTYSALIW TNKAIQRKDI 451 500 ENSP00000326003/1-529 EFLNDIKDLK IDQKTPLRVL HRRPLAVRAR VIHFMETQYV DEHHFRLHLK bmy_03005T0/1-338 EFLDDIKDLK IDQKTPLRVL HRRPLAVRTR IVHSMETHYV DEHHFRLYLK ENSBTAP00000012785/1-533 EFLDDIKDLN IDQKTPLRVL HRRPLAVRTR IIHSMETRYV DEHHFRLYLK BACU013704/1-532 EFLDDIKDLK IDQKTPLRVL HRRPLAVRTR IIHSMETHYV DEHHFRLYLK ENSTTRP00000012667/1-489 EFLDDIKDLK IDQKTPLRVL HRRPLAVRTR IIHSMETHYV DEHHFRLYLK 501 550 ENSP00000326003/1-529 TQAGTYIKEF VHGDFGRTKP NIGSLMNVTA DILELDVESV DVDWPPALDD bmy_03005T0/1-338 TQAGTYIKEF VHGDFGRTKP NICSLMDVTA DILELDVESV DVDWPPALDD ENSBTAP00000012785/1-533 TQAGTYIKEF VHGDFGRTKP NIGSLMDVTA DILELDVESV DVDWPPALDD BACU013704/1-532 TQAGTYIKEF VHGDFGRTKP NICSLMDVTA DILELDVESV DVDWPPALDD ENSTTRP00000012667/1-489 TQAGTYIKEF VHGDFGRTKP NICSLMDVTA DILELDVESV DVDWPPALDD