KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:54 2014 Check: 00 .. Name: ENSP00000262608/1-1443 Len: 1582 Check: 4734 Weight: 1.00 Name: ENSBTAP00000012801/1-1399 Len: 1582 Check: 6952 Weight: 1.00 Name: BACU007541/1-1412 Len: 1582 Check: 2668 Weight: 1.00 Name: ENSTTRP00000002233/1-1388 Len: 1582 Check: 7599 Weight: 1.00 Name: bmy_08985T0/1-1172 Len: 1582 Check: 6950 Weight: 1.00 // 1 50 ENSP00000262608/1-1443 ---------- ---------Q ELEAALHRDD VEFISDL-IA CLLQGCYQ-R ENSBTAP00000012801/1-1399 ---------- ---------- ELEAALHRDD VEFISDL-IA RLLQGCYQ-R BACU007541/1-1412 ---------- ---------- ---------- --------MC LCVWGCLD-- ENSTTRP00000002233/1-1388 PLLKVAWLWK AVADGLPAET ELEAALHRDD VEFISDL-IA CLLQGCYQ-R bmy_08985T0/1-1172 ---------- ---------- --MGGVAAEQ GQLVRELRWA CTVLGVFGLR 51 100 ENSP00000262608/1-1443 RDITPQTFHS YLEDIINYRW ELEEGKPNPL REASFQDLPL RTRVEILHRL ENSBTAP00000012801/1-1399 RDITPQTFHS YLEDIINYRW ELEEGKPNPL REASFQDLPL RTRVEILHRL BACU007541/1-1412 ---RPQTFHS YLEDIISYRW ELEEGKPNPL REASFQDLPL RTRVEILHRL ENSTTRP00000002233/1-1388 RDITPQTFHS YLEDIISYRW ELEEGKPNPL REASFQDLPL RTRVEILHRL bmy_08985T0/1-1172 TDVCPS---- ---------- ----GAPDA- ---------- ---------- 101 150 ENSP00000262608/1-1443 CDYRLDADDV FDLLKGLDAD SLRVEPLGED NSGALYWYFY GTRMYKEDPV ENSBTAP00000012801/1-1399 CDYRLDADDV FDLLKGLDAD SLRVEPLGED SSGALYWYFY GTRMYKEDPA BACU007541/1-1412 CDYRLDADDV FDLLKGLDAD SLRVEPLGED NAGALYWYFY GTRMYKEDPV ENSTTRP00000002233/1-1388 CDYRLDADDV FDLLKXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08985T0/1-1172 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000262608/1-1443 QGKSNGELSL SRESEGQKNV SSIPGKTGKR RGRPPKRKKL QEEILLSEKQ ENSBTAP00000012801/1-1399 QGGSHGELAL SRESEGQKNV SSVPGKTGKR RGRPPKRKKL QEETFMSDKQ BACU007541/1-1412 QGKSNGELSL S--------- ---------- ---------- ------SEKQ ENSTTRP00000002233/1-1388 XXXXXXXXXX XXETEGQKNV SSVPGKTGKR RGRPPKRKKL QEETLVSEKQ bmy_08985T0/1-1172 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000262608/1-1443 EENSLASEPQ TRHGSQGPGQ GTWWLLCQTE EEWRQVTESF RERTSLRERQ ENSBTAP00000012801/1-1399 EENSSASELQ TRNGSQGPGQ GSWWLLCQTE QEWRQVTESF RERTSVRERQ BACU007541/1-1412 EENSLASEPQ TRNGSQGPGQ GSWWLLCQTE EEWRQVTESF RDRTSLRERQ ENSTTRP00000002233/1-1388 EENSLASELQ TRNXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08985T0/1-1172 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000262608/1-1443 LYKLLSEDFL PEICNMIAQK GKRPQRTKAE LHPRWMSDHL SIKPVKQEET ENSBTAP00000012801/1-1399 LYKLLSEDFL PEICSMIAQK GVKFKRLPAE THPQEIYSHY YVISIKKEET BACU007541/1-1412 LYKLLSEDFL PEICSMIAQK ---------- ---------- --------ET ENSTTRP00000002233/1-1388 XXKLLSEDFL PEICSMIAQK XXXXXXXXXX XXXXXXXXXX XXXXXXXXET bmy_08985T0/1-1172 ---------- PVLC------ ---------- ---------- ---------- 301 350 ENSP00000262608/1-1443 PVLTRIEKQK RKEEEEERQI LLAVQKKEQE QMLKEERKRE LEEKVKAVEG ENSBTAP00000012801/1-1399 PVLSRLEKQK RREEEEERQI LLAVQKKEQE QLLKEERKRE LEERVKAVEG BACU007541/1-1412 PVLSRIEKQK RREEEEERQI LLAVQKKEQE QLLKEERKRE LEERVKAVEG ENSTTRP00000002233/1-1388 PVLGRIEKQK RRAEEEERQI LLAVQKKEQE QLLKEERKRE LEERVKAVE- bmy_08985T0/1-1172 ---------- ---------- ---------- ---------- ----VHA--- 351 400 ENSP00000262608/1-1443 MCSVRVVWRG ACLSTSRPV- ------DRAK RRKLREERAW LLAQGKELPP ENSBTAP00000012801/1-1399 SCGGALALTP PVVPGACPSL GRCVS-NRAK RRRLREERAW LLAQGKALPP BACU007541/1-1412 RT-------D GCPCGAPDAP VLCVRADRAK RRKLREERAW LLAQGKALPP ENSTTRP00000002233/1-1388 ---------- ---------- ------DRAK RRKLREERAW LLAQGKALPP bmy_08985T0/1-1172 ---------- ---------- ------DRAK RRKLREERAW LLAQGKALPP 401 450 ENSP00000262608/1-1443 ELSHLDPNSP MREEKKTKDL FELDDDFTAM YKVLDVVKAH KDSWPFLEPV ENSBTAP00000012801/1-1399 KLSHLDPQSP PRAEKRTRDP FELDDDFTAM YKVLDVVKAH KDSWPFLEPV BACU007541/1-1412 ELSRLDPHSP PREEKRTRDP FELDDDFTAM YKVLDVVKAH KDSWPFLEPV ENSTTRP00000002233/1-1388 ELSHLDPPSP PREEKRTRDP FELDDDFTAM YKVLDVVKAH KDSWPFLEPV bmy_08985T0/1-1172 ELSHLDPHSP PREEKRTRDP FELDDDFTAM YKVLDVVKAH KDSWPFLEPV 451 500 ENSP00000262608/1-1443 DESYAPNYYQ IIKAPMDISS MEKKLNGGLY CTKEEFVNDM KTMFRNCRKY ENSBTAP00000012801/1-1399 DESYAPNYYQ IIKVPMDISS MEKKLNGGSY CTKEEFVNDM KTMFRNCRKY BACU007541/1-1412 DESYAPNYYQ IIKVPMDISS MEKKLNGGLY CTKEEFVNDM KTMFRNCRKY ENSTTRP00000002233/1-1388 DESYAPNYYQ IIKVPMDISS MEKKLNGGLY CSKEEFVNDM KTMFRNCRKY bmy_08985T0/1-1172 DESYAPNYYQ IIKVPMDISS MEKKLNGGLY CTKEEFVNDM KTMFRNCRKY 501 550 ENSP00000262608/1-1443 NGESSEYTKM SDNLERCFHR AMMKHFPGED GDTDEEFWIR EDEKREKRRS ENSBTAP00000012801/1-1399 NGESSEYTKM SDNLERCFHR AMLKHFPGED GDTDEEPWMR EEERREKRRG BACU007541/1-1412 NGESSEYTKM SDNLERCFHR AMLKHFPGED GDTDEEFWVR EEEKREKRRG ENSTTRP00000002233/1-1388 NGESSEYTKM SDNLERCFHR AMLKHFPGED GDTDEEFWVR EEEKREKRRG bmy_08985T0/1-1172 NGESSEYTKM SDNLERCFHR AMLKHFPGED GDTDEEFWVR EEEKREKRRG 551 600 ENSP00000262608/1-1443 RAGRSGGSHV WTRSRDPEGS SRKQQPMENG GKSLPPTRRA PSSGDDQSSS ENSBTAP00000012801/1-1399 RGAR---GHV CTRSRDSEAL GRR-QPAENG GKALPLGRRA TASGAGQSS- BACU007541/1-1412 RAAR---SHV CTRSRDSEAP GRKQQPAENG GKSLPPGRRA ASSGAGESSG ENSTTRP00000002233/1-1388 RAAR---SHV CTRSRDSEAP GRKQQPAENG GKSLPPGRRA ASSAAGESRG bmy_08985T0/1-1172 RAAR---SHV CTRSRDSEAP GRKQQPAENG GKSLPPGRRA ASSGAGESSG 601 650 ENSP00000262608/1-1443 STQPPREVGT SNGRGFSHPL HCGGTPSQAP FL-NQMRPAV PGTFGPLRGS ENSBTAP00000012801/1-1399 SVQPPGQVGA SNSSCLSGPL CLGG-SGQLL FSRTGRRPAG QGAFCPLRGS BACU007541/1-1412 SAQPPGEVGT PNSRSLPGPL HYGG-PGQAP LS-SQLRPAG QGTFCPLRGS ENSTTRP00000002233/1-1388 SAQPPGEVGI PSSHSLPGPL HYGG-PSQAP LA-SQLRPAG QGTFCPLRGS bmy_08985T0/1-1172 SVQPPGEVGT PNSRSLPGPL HYGG-PGQAP LS-SQLRPAG QGTFCPLRGS 651 700 ENSP00000262608/1-1443 DPATLYGSSG VPEPHPGEPV QQRQPFTMQP PVGINSLRGP RLGTPEEKQM ENSBTAP00000012801/1-1399 DPAAVSVSSG APGLPARGPG LQPAPLAVQP PAGINHHRGP GCGPPDEKLA BACU007541/1-1412 DPATIRVSSG APEPHPGGPG QQPQPLAVQP PAGINHHRGP ----PDEKPG ENSTTRP00000002233/1-1388 DPATIRVSSG APEPHPGGPG QHPQPLAVQP PAGINHHRGP ----PDEKPV bmy_08985T0/1-1172 DPATIRVSSG APEPHPGGPG QQPQPLAVQP PAGINHHRGP ----PDEKPV 701 750 ENSP00000262608/1-1443 CGGLTHLSNM GPHPGSLQLG QISGPSQDGS MYAPAQFQPG FIPPRHGGAP ENSBTAP00000012801/1-1399 CGGLASLADM GSRPGPLPLS QMSGPSQDGR VYPPTHFQPG LLPPRHGGAP BACU007541/1-1412 CGGLVPLGDM GSRPGPSLLG QMSGPSQEGT MYPPAHFQPG FIPPRHGGAP ENSTTRP00000002233/1-1388 CGGLAPLADM GSRPGPSLLG QMSSPSQEGT MYPPAHFQPG FIPPRHGGAP bmy_08985T0/1-1172 CGGLVPLADM GSRPGPSLLG QMSGPSQEGT MYPPAHFQPG FIPPRHGGAP 751 800 ENSP00000262608/1-1443 ARPPDFPESS EIPPSHMYRS YKYLNRVHSA VWNGNHGATN QGPLGPDEKP ENSBTAP00000012801/1-1399 ARPPDFPESP EVPPSHMYRP YKYLSRVHSA VWNGSHGAAN PGPLGPDEKP BACU007541/1-1412 ARPPAFPESS EIPPSHMYRS YKYLSRVHST VWNGNHGATN PGPLGPDEKP ENSTTRP00000002233/1-1388 ARPPAFPESS EIPPSHMYRS YKYLSRVHSA VWNGNHGATN PGPLGPDEKP bmy_08985T0/1-1172 ARPPAFPESS EIPPSHMYRS YKYLSRVHSA VWNGNHGATN PGPLGPDEKP 801 850 ENSP00000262608/1-1443 HLGPGPSHQP RTLGHVMDSR VMRPPVPPNQ WTEQSGFLPH GVPSSGYMRP ENSBTAP00000012801/1-1399 PVGPGPSHQP RPLGHMMDSR VMRPPLPPNQ WTEQSGFLPH SVPPSGYLHP BACU007541/1-1412 PMGPGPSHQP RTLGHMIDSR VMRTPLPPNQ WPEQSGFLPH GVPSSGYMRP ENSTTRP00000002233/1-1388 PMVPGPSHQP RTLGHMIDSR VMRAPLPPNQ WPEQSGFLPH GVPSSGYMRP bmy_08985T0/1-1172 PMGPGPSHQP RTLGHMIDSR VMRAPLPPNQ WPEQSGFLPH GVPSSGYMRP 851 900 ENSP00000262608/1-1443 PCKSAGHRLQ PPPVPAPSSL FGAPAQALRG VQGGDSMMDS PEMIAMQQLS ENSBTAP00000012801/1-1399 PCKPGAQRLQ PPAAPALGSL FGAPAPALRG VQGGDSMLDS PEMLAMQQLS BACU007541/1-1412 PCKPGGHRFQ PPPAPTQGSL FGAPAQALRG MQGGDSMLDS PEMLAMQQLS ENSTTRP00000002233/1-1388 PCKPGGHRFQ PPPAPTQGSL FGAPAQALRG MQGGDSMLDS PEMLAMQQLS bmy_08985T0/1-1172 PCKPGGHRFQ PPPAPTQGSL FGAPTQALRG MQGGDSMLDS PEMLAMQQLS 901 950 ENSP00000262608/1-1443 SRVCPPGVPY HPHQPAHPRL PGPFPQVAHP MSVTVSAPKP ALGNPGRAPE ENSBTAP00000012801/1-1399 SRGCPPGVPY HPRQPAPPRL PGPFPPMG-- ----LVAPKP ASGDPGRTQD BACU007541/1-1412 SRGCPPGVPY RPRQPLPPPV TGPFPPVG-- ----VAAPKP ASGDPGRTQD ENSTTRP00000002233/1-1388 SRGCPAGMPY RPRQPVPPPA PGPFPPVG-- ----VAAPKP ASGDPGRTQD bmy_08985T0/1-1172 SRGCPPGVPY RPRQPVPPPV TGPFPPVG-- ----VAAPKP ASGDPGRTQD 951 1000 ENSP00000262608/1-1443 NSEAQEPEND QAEPLPGLEE KPPGVGTSEG VYLTQLPHPT PPLQTDCTRQ ENSBTAP00000012801/1-1399 SSDVQEPENG QADPLPGLEE RPASVGASEG AFLKQLPHPA PPLQADFARR BACU007541/1-1412 SRETLEPENG RADPLPGLEE KPASVGALEG AFLKQLPHPA PLLQADCARR ENSTTRP00000002233/1-1388 SRETLEPENG RADPLPGLEE KPASVGALEG AFLKQLPHPA PPLQADCARR bmy_08985T0/1-1172 SRETLEPENG RADPLPGLEE KPASVGALEG AFLKQLPHPA PLLQADCARR 1001 1050 ENSP00000262608/1-1443 SSPQERETVG PELKSSSSES ADNCKAMKGK NPWPSDSSYP GPAAQGCVRD ENSBTAP00000012801/1-1399 SSPQGRGPEG PELRPESSEP GDGCPASTVR SAWLSGSGFA SPPAQAC--- BACU007541/1-1412 SSPHGRDADG PELRHESSEP GDSCPVNAGR GAWLSGSGFA GPAAQGC--- ENSTTRP00000002233/1-1388 SSPQGRDSDG PELRRESSEP GDSCPVSAGR GAWLSGSGFA GAAAQGC--- bmy_08985T0/1-1172 SSPQGRDADG PELRHESSET GDSCPVNAGR GAWLSGSGFA GPAAQGC--- 1051 1100 ENSP00000262608/1-1443 LSTVADRGAL SENGVIGEAS PCGSEGKGLG SSGSEKLLCP RGRTLQETMP ENSBTAP00000012801/1-1399 --TLADLGPL PENGLRVEAS PCGSEGK--- ---------- -SRAPPEAGP BACU007541/1-1412 --ALADPGAL PENGLRVEAS PCGSEGK--- ---------- -GRAPPEAVP ENSTTRP00000002233/1-1388 --ALADPGAL PENGLRVEAS PCGSEGK--- ---------- -GRAPPEAML bmy_08985T0/1-1172 --ALADPGAL PENGLRVEAS PCGSEGK--- ---------- -GRAPPEAVP 1101 1150 ENSP00000262608/1-1443 CTGQNAATPP STDPGLTGGT VSQFPPLYMP GLEYPNSAAH YHISPGLQGV ENSBTAP00000012801/1-1399 -----PAEPA CS-------- -----PLYTP GLEFPSSATR YHVGPGLQSV BACU007541/1-1412 -----PAEPA CS-------- -----ALYAP GLEYPSSTAR YHVGPGLQAV ENSTTRP00000002233/1-1388 -----PPSPV R--------- -----PLYAP GLEYPSSTAR YHVGPGLQAV bmy_08985T0/1-1172 -----PAEPA CS-------- -----PLYAP GLEYPSSTAR YHVGPGLQAV 1151 1200 ENSP00000262608/1-1443 GPVMGGKSPA SHPQHFPPRG FQSNHPHSGG FPRYRPPQGM RYSYHPPPQP ENSBTAP00000012801/1-1399 GPVMGGKPPA PHPPPFPPRA FQSHDPHSGV FPRYRPHQGM RYPYQPPPQP BACU007541/1-1412 GPVMGGKPSA PHPQPFPPRA FPSHDPHSGV FPRYRPHQGM RYPYQPPPQP ENSTTRP00000002233/1-1388 GPVMGGKPSA PHPQPFPPRA FPSHDPHSGV FPRYRPHQGM RYPYQPPPQP bmy_08985T0/1-1172 GPVMGGKPSA PHPQPFPPRA FPSHDPHSGV FPRYRPHQGM RYPYQPPPQP 1201 1250 ENSP00000262608/1-1443 SYHHYQRTPY YACPQSFSDW QRPLHPQGSP SGPPASQPPP PRSLFSDKNA ENSBTAP00000012801/1-1399 SYHHYPRTPY YSCPQGFSDW PRHLAAPVSP SGPPPAQPTP ARPLFPDKSA BACU007541/1-1412 SYHHYPRTPY YSCPQGFSDW PRHLPAPGSP SPPPPAQPAP ARPLFLDKSA ENSTTRP00000002233/1-1388 SYHHYPRTPY YSCPQGFSDW QRHLPAPGSP SGPPPAQPAP ARPLFLDKSV bmy_08985T0/1-1172 SYHHYPRTPY YSCPQGFSDW PRHLPAPGSP SGPPPAQPAP ARPLFLDKSA 1251 1300 ENSP00000262608/1-1443 MASLQGCETL NAALTSPTRM DAVAAKVPND GQNPGPEEEK LDESMERPES ENSBTAP00000012801/1-1399 VTGLQGCEAL GAALTSPTRV DAVAAKMA-E GQNPGPEGKQ -DESMEQPES BACU007541/1-1412 GAGLQGCEAL SAALTSPARV DAVVAKTA-D GQNPGPEEKQ -DESMERPES ENSTTRP00000002233/1-1388 GAGLQGCEAL SAALTSPTRV DTVVAKTA-D GQNPGPEEKQ -DESMERPES bmy_08985T0/1-1172 GAGLQGCEAL SAALTSPARV DAVVAKTA-D GQNPGPEEKQ -DESMERPES 1301 1350 ENSP00000262608/1-1443 PKEFLDLDNH NAATKRQSSL SASEYLYGTP P-PLSSGMGF GSSAFPPHSV ENSBTAP00000012801/1-1399 PKEFLDLDNH NAAARRQGSL SASECLYGAP PAPLGPGMTF GSPAFPPHAV BACU007541/1-1412 PKEFLDLDNH NAATKRQSSL SASEYLYGTP PAPLSSGVGF GSSVFPPHGV ENSTTRP00000002233/1-1388 PKEFLDLDNH NAATKRQSSL SASEYLYGTP PAPLSSGVGF GSSAYPPHGV bmy_08985T0/1-1172 PKEFLDLDNH NAATKRQSSL SASEYLYGTP PAPLSSGVGF GSSVFPPHGV 1351 1400 ENSP00000262608/1-1443 MLQTGPPYTP QRPASHFQPR AYSSPVAALP PHHPGATQPN GLSQEGPIYR ENSBTAP00000012801/1-1399 MLHAGPPYPP QRPATHFQPR AYASPSATHP PHRPVAAQPN GLSPECPLYR BACU007541/1-1412 MLHAGPPYQP QRPAGHFQPR AYSSPTAAHP PHRPVVAQPN GLSPECPLYR ENSTTRP00000002233/1-1388 MLHAGPPYPP QRPAGHFQPR AYSSPTAAHP PHRPVVAQPN GLSPECPLYR bmy_08985T0/1-1172 MLHAGPPYQP QRPAGHFQPR AYSSPTAAHP PHRPVVAQPN GLSPECPLYR 1401 1450 ENSP00000262608/1-1443 CQEEGLGHFQ AVMMEQIGTR SGIRGPFQEM YRPS------ ---------- ENSBTAP00000012801/1-1399 YPEEGLGHFQ AVMMEQMGPG SGARASFQEM YRPS------ ---------- BACU007541/1-1412 YPEEGLGHFQ AVMMEQMGPG SGVRVPFQEM HRPSGTDVLK LGQPLALGRA ENSTTRP00000002233/1-1388 YPEEGLGHFQ AVMMEQMGPG SGVRVPFQEM YRPS------ ---------- bmy_08985T0/1-1172 YPEEGLGHFQ AVMMEQMGPG SGVRVPFQEM HRPS------ ---------- 1451 1500 ENSP00000262608/1-1443 ---GMQMHPV QSQASFPKTP TAATSQEEVP PHKPPTLPL- -DQS------ ENSBTAP00000012801/1-1399 ---GLQGPSV QSRPSFPKTP APAASQEELP PQKPPTLPL- -DQV------ BACU007541/1-1412 GPKGLPSLPV ACRQGSAASP ALRGP---LY PGRRPAAALI ARELLRTQGL ENSTTRP00000002233/1-1388 ---GLQMHPA QSRPSFPKTP APAAPQEGLP PHKPPTLPL- -DQ------- bmy_08985T0/1-1172 ---GLQMHPA QSRPSFPKTP APAAPQEGLP PHKPPTLPL- -DQLVQGGNK 1501 1550 ENSP00000262608/1-1443 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012801/1-1399 ---------- ---------- ---------- ---------- ---------- BACU007541/1-1412 VGLYRGLGAA LLRPERLGAQ RVPLLRGDIP FSVIYFPLFA KLNLLGVREP ENSTTRP00000002233/1-1388 ---------- ---------- ---------- ---------- ---------- bmy_08985T0/1-1172 PQGNRKLHMT RVENGEEGGR GPAHLSHHWH HFVCPRAWTP LLTDAPAREV 1551 1600 ENSP00000262608/1-1443 ---------- ---------- ---------- -- ENSBTAP00000012801/1-1399 ---------- ---------- ---------- -- BACU007541/1-1412 TGNASFAHSF TSGCVAGPVT PLEAEYIAGG AA ENSTTRP00000002233/1-1388 ---------- ---------- ---------- -- bmy_08985T0/1-1172 VGESGDQMGW TLVAFPDPET -----LVQGR SS