KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:55 2014 Check: 00 .. Name: ENSP00000304360/1-804 Len: 809 Check: 7589 Weight: 1.00 Name: ENSBTAP00000012805/1-805 Len: 809 Check: 3158 Weight: 1.00 Name: bmy_00179T0/1-546 Len: 809 Check: 5057 Weight: 1.00 Name: BACU006973/1-802 Len: 809 Check: 2939 Weight: 1.00 Name: ENSTTRP00000001098/1-670 Len: 809 Check: 6783 Weight: 1.00 // 1 50 ENSP00000304360/1-804 MDLPVDEWKS YLLQKWASLP TSVQVTISTA ETLRDIFLHS SSLLQPEDEL ENSBTAP00000012805/1-805 MDLPVDEWKS YILQKWSLLP KSIQVTISTA ETLHDLFLHS SPLLQPEDEM bmy_00179T0/1-546 ---------- ---------- ---------- -MLVSMYTFN RCIVL----- BACU006973/1-802 MDLPMDEWKS YILQKWSLLP KSIQVTISTA ETLSDLFLHS SSLLQPEDEM ENSTTRP00000001098/1-670 MDLPVDEWKS YVLQKWSLLP KSIQVTISTA ETLSDIFLHS SSLLQPEDEM 51 100 ENSP00000304360/1-804 FLKRLSKGYL VGKDSDAPLF YREEGNKKFQ EKDYTGAAVL YSKGVSHSRP ENSBTAP00000012805/1-805 FLKRLSGGYL VGKDPDASLF YREKGNQKFQ AKDYMGAAVL YSKGVSHSGP bmy_00179T0/1-546 ---------- ---------- ---------- ---------- --QGVSHSRP BACU006973/1-802 FLKRLSRGYL VGKDPNAPLF YREEGNKKFQ KKDYMGATVL YSKGVSHSRP ENSTTRP00000001098/1-670 FLKRLSRGYL VGKDPNAPLF YREEGNKKFQ KKDYMGATVL YSKGVSHSRP 101 150 ENSP00000304360/1-804 NTEDMSLCHA NRSAALFHLG QYETCLKDIN RAQTHGYPER LQPKIMLRKA ENSBTAP00000012805/1-805 SSTDISLCYA NRSAALFHLG QYEICLKDIV RAQTHGYPER LQPKLLLRKA bmy_00179T0/1-546 NSEDISLCYA NRSAALFHLG QYETCLKDIV RAQTHGYPEG LQPKLLLRKA BACU006973/1-802 NSEDISLCYA NRSAALFHLG QYETCLKDIV RAQTHGYPEG LQPKLLLRKA ENSTTRP00000001098/1-670 NSEDISLCYA NRSAALFHLG QYETCLKDIV RAQTHGYPER LQPKLLLRKA 151 200 ENSP00000304360/1-804 ECLVALGRLQ EASQTISDLE RNFTATPALA DVLPQTLQRN LHRLKMKMQE ENSBTAP00000012805/1-805 ECLVTLGRPQ EASQTVTDLE SSFAAKPTLS ASQFQILQRT LCRVKVKVQE bmy_00179T0/1-546 ECLVTLGRPH EASQTISDLE SNFAAKPTLA ASQFQILQRT LCRLKVKVQE BACU006973/1-802 ECLVTLGRPQ EASQTISDLE SNFAAKPTLA ASQFQILQRT LCRLKVKVQE ENSTTRP00000001098/1-670 ECLVTLGRPH EASQTISDLE SNFAAKPTLA ASQFQVLQRT LCRLKVKVQE 201 250 ENSP00000304360/1-804 KDSLTESFPA ALAKTLEDAA LREENEQLSN ASSSIGLCVD PLKGRCLVAT ENSBTAP00000012805/1-805 KENLPEIFPE ALTKTFEGVD LREENEQIPG ASSSVSLHID PLKGRYLVAT bmy_00179T0/1-546 KENLTETSPT ALTKAFEDMD LREENEQISN TSSSVSLCTD PLKGRYLVAT BACU006973/1-802 KGNLTETSPA ALTKAFEDMD LREENEQISN TSSSVSLCTD PLKGRYLVAT ENSTTRP00000001098/1-670 KENLTETSPA ALTKALEDMD LREENEQISS TSSSVSLCTD PLKGRCLVAT 251 300 ENSP00000304360/1-804 KDILPGELLV QEDAFVSVLN PGELPPPHHG LDSKWDTRVT NGDLYCHRCL ENSBTAP00000012805/1-805 KDILPGELLV KEDAFVSVLN PGEVPLRPRG LESKWDIQVT NGDLHCHRCL bmy_00179T0/1-546 KDILPGELLV KEDAFVSVLN PGEMPPWHHG LESKWDTRAT NADLYCHRCL BACU006973/1-802 KDILPGELLV KEDAFVSVLN PGEMPPWHHG LESKWDTRAT NADLYCHRCL ENSTTRP00000001098/1-670 KDILPGELLV KEDAFVSVLN PGEMPPWHRG LESKWDTRAT NGDLYCHRCL 301 350 ENSP00000304360/1-804 KHTLATVPCD GCSYAKYCSQ ECLQQAWELY HRTECPLGGL LLTLGVFCHI ENSBTAP00000012805/1-805 RHTLAPVPCD GCSYAKYCSQ ECMQQAWDRY HSVECSLGAL LLTLGVFCHV bmy_00179T0/1-546 KHTLAPVPCD GCSYAKYCSQ ECLQQAWDLY HSIECSLGGL LLTLGVFCHI BACU006973/1-802 KHTLAPVPCD GCSYAKYCSQ ECLQQAWDLY HSIECSLGGL LLTLGVFCHI ENSTTRP00000001098/1-670 KHTLAPVPCD GCSYAKYCSQ ECLQQAWDLY HSIECSLGGL LLTLGVFCHI 351 400 ENSP00000304360/1-804 ALRLTLLVGF EDVRKIITKL CDKISNKDIC LPESNNQVKT LNYGL-GESE ENSBTAP00000012805/1-805 ALRSTLLARF EDVGKVTKKL CGEMSNQGIC LPESKNPVQT LKYDLGGEGD bmy_00179T0/1-546 ALRSTLLARF EEAXKVINKL CGEITNRDIC LPESKNLAQI LSYDLGGESK BACU006973/1-802 ALRSTLLARF EEAGKVINKL CGEITNRDIC LPESKNLAQI LSYDVGGESK ENSTTRP00000001098/1-670 ALRSTLLARF EEAGKVINKL CGEITNRDTC LPESKNLAQI LSYDLGGESK 401 450 ENSP00000304360/1-804 KNGNIVETPI PGCDINGKYE NNYNAVFNLL PHTENHSPEH KFLCALCVSA ENSBTAP00000012805/1-805 KKDKAVETPI PGCDINGKYE RNYNAIFHLL PHTENHSPEH KFLCALSVSA bmy_00179T0/1-546 KKGKTVETPI PGCDINGKYE NNYNAVFSLL PHARNHSPVH KFLCALSVSA BACU006973/1-802 KKGKTVETPI PGCDINGKYE NNYNAVFSLL PHTGNHSPVH KFLCALSVSA ENSTTRP00000001098/1-670 NKGKTVETPI PGCDINGKYE NNYNAVFSLL PHTGNHSPVH KFLCALSVSA 451 500 ENSP00000304360/1-804 LCRQLEAASL QAIPTERIVN SSQLKAAVTP ELCPDVTIWG VAMLRHMLQL ENSBTAP00000012805/1-805 LCRQLEAAGL QAFTTD--LK PTKLKAAEPP VLCAELSVWG VAMLRHMLQL bmy_00179T0/1-546 LCRQLEAASL QAFTTG--LK SSKLKAAAAP VLYPELNIWG VAMLRHMLQL BACU006973/1-802 LCRQLEAASL QAFTTG--LK SSKLKAAVAP MLYPELNIWG VAMLRHMLQL ENSTTRP00000001098/1-670 LCRQLEAASL QAFTRP---E SSKLKAAAAP VLYPELNIWG VAMLRHMLQL 501 550 ENSP00000304360/1-804 QCNAQAMTTI QHTGPKGSIV TDSRQVRLAT GIFPVISLLN HSCSPNTSVS ENSBTAP00000012805/1-805 QCNAQAITTI QQTGSKESLI TDTRRVRLAT ALFPVVSLLN HSCSPNTSVS bmy_00179T0/1-546 QCNAQAITTI QQTGSEENLI TDSRQVRLAT GLFPVVSLLN HSCSPNTSVS BACU006973/1-802 QCNAQAITTI QQTGSEENLI TDSRQVRLAT GLFPVVSLLN HSCSPNTSVS ENSTTRP00000001098/1-670 QCNAQAITTI QQTGSEKNLI TNSRQVRLAT GLFPVVSLLN HSCSPNTSVS 551 600 ENSP00000304360/1-804 FISTVATIRA SQRIRKGQEI LHCYGPHKSR MGVAERQQKL RSQYFFDCAC ENSBTAP00000012805/1-805 FIGTIATIRA SQLIRSGQEI LHCYGPHESR MGVAERRQKL RSQYFFDCDC bmy_00179T0/1-546 FTSTVATVRA SQQIGKGQEI LHCYGEPSIL PPVH------ ---------L BACU006973/1-802 FISTVATVRA SQQIRKGQEI LHCYGPHESR MGVAERCQKL RSQYFFDCNC ENSTTRP00000001098/1-670 FISTVATVRA SQQIKKGQEI LHCYGPHESR MGVAERRQKL RSQYFFDCNC 601 650 ENSP00000304360/1-804 PACQTEA-HR MAAGPRWEAF CCNSCGAPMQ GDDVLRCGSR SCAESAVSRD ENSBTAP00000012805/1-805 PPCEREK-QR PSAGPGRGAF RCHRCRALLQ GDDVLSCSGP ACMES-VSRD bmy_00179T0/1-546 SPAEKDGVNS PEQATGQVPH LCRVC----- ---ILAEAVH TYGEA----- BACU006973/1-802 PPCEREK-QR PSQGPRWEAF CCHRCGALLQ GGDVLSCGST SCTES-VSRD ENSTTRP00000001098/1-670 PPCEREK-QR PSQGPGREAF CCHRCRALLQ GYDVLSCGST SCTES-VSRD 651 700 ENSP00000304360/1-804 HLVSRLQDLQ QQVRVAQKLL RDGELER--- AVQRLSGCQR DAESFLWAEH ENSBTAP00000012805/1-805 LLVSRLQDLQ RQVGAAQKHL RNGRLELIEV AIQLLLGCQS DAESFLSAEH bmy_00179T0/1-546 ---------- ---------- ---------- ---------- ---------- BACU006973/1-802 HLVSQLQDLQ QQVGMARKLL RNGELER--- AIQLLLGCQH DAESFLLAEH ENSTTRP00000001098/1-670 HLVSQLQDLQ QQVGMARKLL RNGEL----- ---------- ---------- 701 750 ENSP00000304360/1-804 AVVGEIADGL ARACAALGDW QKSATHLQRS LYVVEVRHGP SSVEMGHELF ENSBTAP00000012805/1-805 SVVGEIEDAL AQAYAALGDW EKSATHLQKS LQVVEVHHGP SSVEMGHELF bmy_00179T0/1-546 ---------- ---------- ---------- ---------- ---------- BACU006973/1-802 SVVGEIEDDL AQAYAALGDW EKSATHLQKS LRVVEVRHGP SSVEMGHELF ENSTTRP00000001098/1-670 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000304360/1-804 KLAQIFFNGF AVPEALSTIQ KAEEVLSLHC GPWDDEIQEL QKMKSCLLDL ENSBTAP00000012805/1-805 KLAQVFFNGC AVPEALKTIQ KAEKVLLVHY GPWNDEIREL QKMKSCLLDL bmy_00179T0/1-546 ---------- ---------- ---------- ---------- ---------- BACU006973/1-802 KLAQIFFNGF AIPEALNTIQ QAEKVLLVHY GPWNDEIQEL QKMKSCLLDL ENSTTRP00000001098/1-670 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000304360/1-804 PPTPVGPAL ENSBTAP00000012805/1-805 LPIPVGPKE bmy_00179T0/1-546 -----KPPH BACU006973/1-802 PPIPVGPNE ENSTTRP00000001098/1-670 ---------