KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:58 2014 Check: 00 .. Name: ENSTTRP00000003651/1-888 Len: 1758 Check: 9379 Weight: 1.00 Name: ENSP00000320038/1-1126 Len: 1758 Check: 8377 Weight: 1.00 Name: bmy_12299T0/1-1211 Len: 1758 Check: 4643 Weight: 1.00 Name: ENSBTAP00000012813/1-1289 Len: 1758 Check: 5359 Weight: 1.00 Name: BACU000609/1-1427 Len: 1758 Check: 1120 Weight: 1.00 // 1 50 ENSTTRP00000003651/1-888 ---------- ---------- ---------- ---------- ---------- ENSP00000320038/1-1126 ---------- ---------- ---------- ---------- ---------- bmy_12299T0/1-1211 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012813/1-1289 ---------- ---------- ---------- ---------- ---------- BACU000609/1-1427 MGASPPPTVT DSEDTVMAKY INRFRQAQPT SREERQSAGP TPADFWWLWP 51 100 ENSTTRP00000003651/1-888 ---------- ---------- ---------- ---------- ---------- ENSP00000320038/1-1126 ---------- ---------- ---------- ---------- ---------- bmy_12299T0/1-1211 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012813/1-1289 ---------- ---------- ---------- ---------- ---------- BACU000609/1-1427 ESPDPSSQLA AGANEPEGRP NTAVPTRAKV ASASQTMAPL QEIKQSLNTW 101 150 ENSTTRP00000003651/1-888 ---------- ---AR----- ---------- ---------- -----STDSL ENSP00000320038/1-1126 ---------- -MVAR----- ---------- ---------- -----STDSL bmy_12299T0/1-1211 --------MK IRQAR----- ---------- ---------- -----STDSL ENSBTAP00000012813/1-1289 ---------- -VQAR----- ---------- ---------- -----STDSL BACU000609/1-1427 NSSLLDLETL SLQSRAARLL KRSKASISSS SSLSPSDAGS SSFPLSSDGL 151 200 ENSTTRP00000003651/1-888 ---------- ---------- ---------- ---------- ---------- ENSP00000320038/1-1126 ---------- ---------- ---------- ---------- ---------- bmy_12299T0/1-1211 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012813/1-1289 ---------- ---------- ---------- ---------- ---------- BACU000609/1-1427 SPFSMTFTPD SSKGSDPEAQ ATPAPAPIPT PSPVSSRAPL RPEDDILYQW 201 250 ENSTTRP00000003651/1-888 ---------- ---------- ---------- ---------- ---------- ENSP00000320038/1-1126 ---------- ---------- ---------- ---------- ---------- bmy_12299T0/1-1211 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012813/1-1289 ---------- ---------- ---------- ---------- ---------- BACU000609/1-1427 RQRRKLEQAR GSQGDGTWVL PQTPALTPTG PPTPAPCSPA ELERQSSKPR 251 300 ENSTTRP00000003651/1-888 ---------- -------DGP G--------- ---------- --------EG ENSP00000320038/1-1126 ---------- -------DGP G--------- ---------- --------EG bmy_12299T0/1-1211 ---------- -------DGP G--------- ---------- --------EG ENSBTAP00000012813/1-1289 ---------- -------DGP G--------- ---------- --------EG BACU000609/1-1427 RSRAQRRESA GRITAADEGP GPQLRGALGQ VVAARLFPAS LEDTPPRQEG 301 350 ENSTTRP00000003651/1-888 SVQP------ ---------- --------LP PA-------- ---------- ENSP00000320038/1-1126 SVQP------ ---------- --------LP TA-------- ---------- bmy_12299T0/1-1211 SVQP------ ---------- --------LP PA-------- ---------- ENSBTAP00000012813/1-1289 SVQP------ ---------- --------LP PT-------- ---------- BACU000609/1-1427 PPPPEAESQK VKATRPQTET LSPRSEVTAP PSESRCPQAE TPQGRSKAES 351 400 ENSTTRP00000003651/1-888 ---------- ---------- ---------- ---------- ---------- ENSP00000320038/1-1126 ---------- ---------- ---------- ---------- ---------- bmy_12299T0/1-1211 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012813/1-1289 ---------- ---------- ---------- ---------- ---------- BACU000609/1-1427 RNAKAMLPLV GSVPRKDKDT SLAEVGCKPP KVRPPPAEEA ATCVKAPSRP 401 450 ENSTTRP00000003651/1-888 ---------- ---------- ---------- ---------- -----GGPSV ENSP00000320038/1-1126 ---------- ---------- ---------- ---------- -----GGPSV bmy_12299T0/1-1211 ---------- ---------- ---------- ---------- -----GGPSV ENSBTAP00000012813/1-1289 ---------- ---------- ---------- ---------- -----GGPSV BACU000609/1-1427 FKEGALEVVA APSSADGHAP SEALLSQAAR LLQAAEGELM RTDARGCPDL 451 500 ENSTTRP00000003651/1-888 KGKPG----- ---------- ---------- ---------- -----KRLSA ENSP00000320038/1-1126 KGKPG----- ---------- ---------- ---------- -----KRLSA bmy_12299T0/1-1211 KGKPG----- ---------- ---------- ---------- -----KRLSA ENSBTAP00000012813/1-1289 KGKPG----- ---------- ---------- ---------- -----KRLSA BACU000609/1-1427 DGSPARYESG PLNLALFPPD SDGSEFQDDP ILQVLRVQRA ELRRQKRLSA 501 550 ENSTTRP00000003651/1-888 PRGPFPRLAD CAHFHYENVD FGHIQLLLSP EREGPSFSGE NELVFGVQVT ENSP00000320038/1-1126 PRGPFPRLAD CAHFHYENVD FGHIQLLLSP DREGPSLSGE NELVFGVQVT bmy_12299T0/1-1211 PRGPFPRLAD CAHFHYENVD FGHI------ ---------- ---------- ENSBTAP00000012813/1-1289 PRGPFPRLAD CAHFHYENVD FGHIQLLLSP ERDGPNVSGE NELVFGVQVT BACU000609/1-1427 PRGPFPRLAD CAHFHYENVD FGHIQLLLSP EREGPSFSGE NELVFGVQVT 551 600 ENSTTRP00000003651/1-888 CQGRSWPVLR SYDDFRSLDA HLHRCIFDRR FSCLPELPPP PEGARAAQML ENSP00000320038/1-1126 CQGRSWPVLR SYDDFRSLDA HLHRCIFDRR FSCLPELPPP PEGARAAQML bmy_12299T0/1-1211 -QGRSWPVLR SYDDFRSLDA HLHRCIFDRR FSCLPELPPP PEGARAAQML ENSBTAP00000012813/1-1289 CQGRSWPVLR SYDDFRSLDA HLHRCIFDRR FSCLPELPPP PEGARAAQML BACU000609/1-1427 CQGRSWPVLR SYDDFRSLDA HLHRCIFDRR FSCLPELPPP PEGARAAQML 601 650 ENSTTRP00000003651/1-888 VPLLLQYLET LSGLVDSNLN CGPVLTWMEL DNHGRRLLLS EEASLNIPAV ENSP00000320038/1-1126 VPLLLQYLET LSGLVDSNLN CGPVLTWMEL DNHGRRLLLS EEASLNIPAV bmy_12299T0/1-1211 VPLLLQYLET LSGLVDSNLN CGPVLTWMEL DNHGRRLLLS EEASLNIPAV ENSBTAP00000012813/1-1289 VPLLLQYLET LSGLVDSNLN CGPVLTWMEL DNHGRRLLLS EEASLNIPAV BACU000609/1-1427 VPLLLQYLET LSGLVDSNLN CGPVLTWMEL DNHGRRLLLS EEASLNIPAV 651 700 ENSTTRP00000003651/1-888 AAAHVVKRYT AQAPDELSFE VGDIVSVIDM PPTEDRSWWR GKRGFQVGFF ENSP00000320038/1-1126 AAAHVIKRYT AQAPDELSFE VGDIVSVIDM PPTEDRSWWR GKRGFQVGFF bmy_12299T0/1-1211 AAAHVVKRYT AQAPDELSFE VGDIVSVIDM PPTEDRSWWR GKRGFQVSLA ENSBTAP00000012813/1-1289 AAAHVVKRYT AQAPDELSFE VGDIVSVIDM PPTEDRSWWR GKRGFQVGFF BACU000609/1-1427 AAAHVVKRYT AQAPDELSFE VGDIVSVIDM PPTEDRSWWR GRLGFQVGFF 701 750 ENSTTRP00000003651/1-888 PSECVELFTE RPGPGLKGDA DGPPGGVPAP QGISSLTSAV PRPRGKLAGL ENSP00000320038/1-1126 PSECVELFTE RPGPGLKADA DGPPCGIPAP QGISSLTSAV PRPRGKLAGL bmy_12299T0/1-1211 GGGQVE---- ---SGHRASS DGP------- ---------- ---------- ENSBTAP00000012813/1-1289 PSECVELFTE RPGPGLKGDA DGPPCGVLAS QGASSLTSAV PRPRGKLAGL BACU000609/1-1427 PSECVELFTE RPGPGLKGDA DGPPGGVPAP QGISSLTSAV PRPRGKLAGL 751 800 ENSTTRP00000003651/1-888 LRTFMHSRPS RQRLRQRGIL RQRVFGC--- DLGEHLSNSG QDVPQVLRCC ENSP00000320038/1-1126 LRTFMRSRPS RQRLRQRGIL RQRVFGC--- DLGEHLSNSG QDVPQVLRCC bmy_12299T0/1-1211 ---VTDPKPS SGR-----IL PQRVCGAVHR AAGSRTKGGC RRSPGWCPSS ENSBTAP00000012813/1-1289 LRTFMRSRPS RQRLRQRGIL RQRVFGC--- DLGEHLSNSG QDVPQVLRCC BACU000609/1-1427 LRTFMHSRPS RQRLRQRGIL RQRVFGC--- DLGEHLSNSG QDVPQVLRCC 801 850 ENSTTRP00000003651/1-888 SEFIEAHGVV DGIYRLSGVS SNIQRLRHEF VSERIHEQSG PAFRQNIHSE ENSP00000320038/1-1126 SEFIEAHGVV DGIYRLSGVS SNIQRLRHEF DSERIPELSG PAFLQDIHSV bmy_12299T0/1-1211 PGYL------ ---------- --LSDLRHEF DSERIPELSG PAFLQDIHSV ENSBTAP00000012813/1-1289 SEFIEAHGVV DGIYRLSGVS SNIQRLRHEF DSERIPELSG PAFLQDIHSV BACU000609/1-1427 SEFIEAHGVV DGIYRLSGVS SNIQRLRHEF DSERIPELSG PAFLQDIHSV 851 900 ENSTTRP00000003651/1-888 SSLCKICFRE LPNPLLTYQL YGKFSEAMSV PGEEERLVRV HDVIQQLPPP ENSP00000320038/1-1126 SSLCKLYFRE LPNPLLTYQL YGKFSEAMSV PGEEERLVRV HDVIQQLPPP bmy_12299T0/1-1211 SSLCKLYFRE LPNPLLTYQL YGKFSEAMSV PGEEERLVRV HDVIQQLPPP ENSBTAP00000012813/1-1289 SSLCKLYFRE LPNPLLTYQL YGKFSEAMSV PGEEERLVRV HDVIQQLPPP BACU000609/1-1427 SSLCKLYFRE LPNPLLTYQL YGKFSEAMSV PGEEERLVRV HDVIQQLPPP 901 950 ENSTTRP00000003651/1-888 HYRTLEYLLR HLARMARHSA NTSMHARNLA IVWAPNLLRS MELESVGLGG ENSP00000320038/1-1126 HYRTLEYLLR HLARMARHSA NTSMHARNLA IVWAPNLLRS MELESVGMGG bmy_12299T0/1-1211 HYRTLEYLLR HLARMARHSA NTSMHARNLA IVWAPNLLRS MELESVGLGG ENSBTAP00000012813/1-1289 HYRTLEYLLR HLARMARHSA NTSMHARNLA IVWAPNLLRS MELESVGLGG BACU000609/1-1427 HYRTLEYLLR HLARMARHSA NTSMHARNLA IVWAPNLLRS MELESVGLGG 951 1000 ENSTTRP00000003651/1-888 AAAFREVRVQ SVVVEFLLTH VDVLFSDTFT SAGLDPAGRC LLPRPKSLAG ENSP00000320038/1-1126 AAAFREVRVQ SVVVEFLLTH VDVLFSDTFT SAGLDPAGRC LLPRPKSLAG bmy_12299T0/1-1211 AAAFREVRVQ SVVVEFLLTH VDVLFSDTFT SAGLDPAGRC LLPRPKSLAG ENSBTAP00000012813/1-1289 AAAFREVRVQ SVVVEFLLTH VDVLFSDTFT SAGLDPAGRC LLPRPKSLAG BACU000609/1-1427 AAAFREVRVQ SVVVEFLLTH VDVLFSDTFT SAGLDPAGRC LLPRPKSLAG 1001 1050 ENSTTRP00000003651/1-888 SGPSTRLLTL EEAQARTQGR LGTPTEPTTS KAPASPVERR KGERGEKQRK ENSP00000320038/1-1126 SCPSTRLLTL EEAQARTQGR LGTPTEPTTP KAPASPAERR KGERGEKQRK bmy_12299T0/1-1211 SGPSTRLLTL EEAQARTQGR LGTPTEPTTS KAPASPVERR KGERGEKQRK ENSBTAP00000012813/1-1289 SGPSTRLLTL EEAQARTQGR LGTPTEPTTS KAPTSPVERR KGERGEKQRK BACU000609/1-1427 SGPSTRLLTL EEAQARTQGR LGTPAEPTTS KAPASPVERR KGERGEKQRK 1051 1100 ENSTTRP00000003651/1-888 PGGSSWKTFF ALGRGPSIPR KKPLPWLGGT RARPPPSGSR PDTVTLRSTK ENSP00000320038/1-1126 PGGSSWKTFF ALGRGPSVPR KKPLPWLGGT RAPPQPSGSR PDTVTLRSAK bmy_12299T0/1-1211 PGGSSWKTFF ALGRGPSIPR KKPLPWLGGT RARPPPSGSR PDTVTLRSTK ENSBTAP00000012813/1-1289 PGGSSWKTFF ALGRGPSIPR KKPLPWLGGT RARPQPSGCR PDTVTLRSAK BACU000609/1-1427 PGGSSWKTFF ALGRGPSIPR KKPLPWLGGT RARPPPSGSR PDTVTLRSTK 1101 1150 ENSTTRP00000003651/1-888 SEESLSSQAS GAGLQRLHRL RRPHSSSDAF PVGPAPAGSC ESLSSSESSE ENSP00000320038/1-1126 SEESLSSQAS GA-------- ---------- ---------- ---------- bmy_12299T0/1-1211 SEESLSSQAS GAGLQRLHRL RRPHSSSDAF PVGPAPAGSC ESLSSSEPSE ENSBTAP00000012813/1-1289 SEESLSSQAS GAGLQRLHRL RRPHSSSDAF PVGPAPAGSC ESLSSSESTE BACU000609/1-1427 SEESLSSQAS GAGLQRLHRL RRPHSSSDAF PVGPAPAGSC ESLSSSEPSE 1151 1200 ENSTTRP00000003651/1-888 TSES----SE TSESSAAGLG ALSGSPSHRA SAWLDDGDEL DFSPPRCLEG ENSP00000320038/1-1126 ---------- ---------- ---------- ---------- ---------- bmy_12299T0/1-1211 SSESSSSESS SSESSAAGLG ALSGSPSHRA SAWLDDGDEL DFSPPRCLEG ENSBTAP00000012813/1-1289 SSSESSS-SS SSESSAAGLG VLSGSPSHRT SAWLDDGDEL DFSPPRCLEG BACU000609/1-1427 SSESSSSESS SSESSAAGLG ALSGSPSHRA SAWLDDGDEL DFSPPRCLEG 1201 1250 ENSTTRP00000003651/1-888 LRGLDFDPLT FRCSSPTPGD PAPPASPAPP APASAFPPRV TPQALSPREP ENSP00000320038/1-1126 ---------- ---------- ---------- ---------- ---------- bmy_12299T0/1-1211 LRGLDFDPLT FRCSSPTPGD PAPPASPAPP APASAFPPRV TPQALSPRGP ENSBTAP00000012813/1-1289 LRGLDFDPLT FRCSSPTPGD PAPPASPAPP APASAFPPRA TPQALSPRGP BACU000609/1-1427 LRGLDFDPLT FRCSSPTPGD PAPPASPAPP APASAFPPRV TPQALSPRGP 1251 1300 ENSTTRP00000003651/1-888 TGPASPMALD IS-PLAVSVP PAVXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000320038/1-1126 ---------- ---------- ----ELLGAG GAPASATPTP ALSPGRSLRP bmy_12299T0/1-1211 TGPASPIALD ISEPLAVSVP PAVLELLGAG GTPASATPAP ALSPSPGLRP ENSBTAP00000012813/1-1289 TSPASPAALD ISEPLSVSVP PAVLELLGAG GTPASATPTP ALSPSPGLRP BACU000609/1-1427 TGPASPIALD ISEPLAVSVP PAVLELLGTG GTPASATPAP ALSPSPGLRP 1301 1350 ENSTTRP00000003651/1-888 XXXXXXXXXX XXXXXXXXXX XXXXXX---- ---------- -------XXX ENSP00000320038/1-1126 HLIPLLLRGA EAPLTDACQQ EMCSKL---- -RGAQGPLGP DMESPLPPPP bmy_12299T0/1-1211 HLIPLLLRGA EAQLSDTCQQ EICSKLALPG PRGAQGQHGA AVDSPLLPPP ENSBTAP00000012813/1-1289 HLIPLLLRGA EAQLSDTCQQ EICSKLALPG PRGAQGQHGA GMDSPLLPPP BACU000609/1-1427 HLIPLLLRGA EAQLSDTCQQ EICSKLALPG PRGAQGQHGA GMDSPLLPPP 1351 1400 ENSTTRP00000003651/1-888 XXXXREEKAL PPH------- ---------- ---------- ---------- ENSP00000320038/1-1126 LSLLRPGGAP PPPPKNPARL MALALAERAQ QVAEQQSQQE CGGTPPASQS bmy_12299T0/1-1211 LSLLRPGGAP PPPPKNPARL MALALAERAQ QVAQRQSQQE QGSTPSAPHS ENSBTAP00000012813/1-1289 LSLLRPGGAP PPPPKNPARL MALALAERAQ QVAQRQSQQE QGSTPSAPQS BACU000609/1-1427 LSLLRPGGAP PPPPKNPARL MALALAERAQ QVAQRQSQQE QGSTPT---- 1401 1450 ENSTTRP00000003651/1-888 ---------- ---------- ---------- ---------- ---------- ENSP00000320038/1-1126 PFHRSLSLEV GGEPLGTSGS GPPPNSLAHP GAWVPGPPPY LPRQQSDGSL bmy_12299T0/1-1211 PFHGSLSLEV GSEPPGTSGS GPPPHSLAHP GAWAPGPPPS LPRQQIDGSL ENSBTAP00000012813/1-1289 PFRRSLSLEV GSEPPGTSGS GPPPHPLAHP GGWAPGPPPS LPRQQSDGSL BACU000609/1-1427 ---------- ---------- ---------- --------PT LPTETTN--- 1451 1500 ENSTTRP00000003651/1-888 ---------- ---------- ---------- ---------- ---------- ENSP00000320038/1-1126 LRSQRPMGTS RRGLRGPAQV SAQLRAGGGG RDAPEAAAQS PCSVPSQVPT bmy_12299T0/1-1211 VRSQRPTGTS RRGPRGPSQV SAQLRTGGRC RDVPEMAAHS LCSVLPQVPT ENSBTAP00000012813/1-1289 VRSQRPTGTS RRAPRGPAQV SAQLRMGGGC GAAPEMAAQF LCSVPQQVPT BACU000609/1-1427 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSTTRP00000003651/1-888 ---------- ---------- ---------- ---------- ---------- ENSP00000320038/1-1126 PGFFSPAPRE CLPPFLGVPK PGLYPLGPPS FQPSSPAPVW RSSLGPPAPL bmy_12299T0/1-1211 PGYFSSAPRE CLPSFLGVPR PGLYPLGSPP FQPSSPAPVW RSPLGPPAPL ENSBTAP00000012813/1-1289 PGFFS-APRE CLPPFLGVPK PGLYPLGSPS FQPSSPAPVW RSPLVPPAPL BACU000609/1-1427 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSTTRP00000003651/1-888 ---------- ---------- ---------- ---------- ---------- ENSP00000320038/1-1126 DRGENLYYEI GASEGSPYSG PTRSWSPFRS MPPDRLNASY GMLGQSPPLH bmy_12299T0/1-1211 DRGENLYYEI EAGEGSPYSG PTRSWSPLRS MPPDRLNASY GMLGQSPPLH ENSBTAP00000012813/1-1289 DRGENLYYEI EAGEGSPYSG PTRSWSPLRS MPPDRLNASY GMLGQSPPLH BACU000609/1-1427 ---------- ---------- ---RWEP--- ---------- ---GEEPAAH 1601 1650 ENSTTRP00000003651/1-888 ---------- ---------- ---------- ---------- ---------- ENSP00000320038/1-1126 RSPDFLLSYP PAPSCFPPDH LGYSAPQHPA RRPTPPEPLY VNLALGPRGP bmy_12299T0/1-1211 RSPDFLLSYP PPPSCFPHDH LGYSAPQHPA RRPTRPEPLY VNLALGPRGP ENSBTAP00000012813/1-1289 RSPDFLLSYP P-PSCFPHDH LGYSAPQHSA RRPTRPEPLY VNLALGPRGP BACU000609/1-1427 G--------- ---------- ---------- ---------- -DLKEGTQGP 1651 1700 ENSTTRP00000003651/1-888 ---------- ---------- ---------- ---------- ---------- ENSP00000320038/1-1126 SPASSSSSSP PAHPRSRSDP GPPVPRLPQK QRAPWGPRTP HRVPGPWGPP bmy_12299T0/1-1211 SPASSSSSSP PAHPRSRSDP GPPAPRLPQK QRAPWGHHTP HRVPGPWGPP ENSBTAP00000012813/1-1289 SPASSSSSSP PAHPRSRSDP GPPAPRLPQK QRAPWGHHTP HRVPGPWGPP BACU000609/1-1427 FPGS------ ---------- ---------- ---------- ---------- 1701 1750 ENSTTRP00000003651/1-888 ---------- ---------- ---------- ---------- YLTRSWSFHS ENSP00000320038/1-1126 EPLLLYRAAP PAYGRGGELH RGSLYRNGGQ RGEGAGPPPP YPTPSWSLHS bmy_12299T0/1-1211 DP-LPYRAAP PAYGRGGEHH RGSLYRNGGQ GREGAGPPPP YPTPSWSFHS ENSBTAP00000012813/1-1289 DP-LPYRAAP PAYGRGGEHH RGSLYRNGGQ GREGAGPPPP YPTPSWSFHP BACU000609/1-1427 ---------- ---------- ---------- ---------- ---------- 1751 1800 ENSTTRP00000003651/1-888 EGQTRSYC ENSP00000320038/1-1126 EGQTRSYC bmy_12299T0/1-1211 EGQTRSYC ENSBTAP00000012813/1-1289 ESQTQSYC BACU000609/1-1427 --------