KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:48:03 2014 Check: 00 .. Name: ENSP00000363832/1-1338 Len: 1361 Check: 1318 Weight: 1.00 Name: ENSBTAP00000012827/1-1339 Len: 1361 Check: 9359 Weight: 1.00 Name: ENSTTRP00000005932/1-1335 Len: 1361 Check: 1542 Weight: 1.00 Name: bmy_21068T0/1-1245 Len: 1361 Check: 1429 Weight: 1.00 Name: BACU019145/1-1286 Len: 1361 Check: 5393 Weight: 1.00 // 1 50 ENSP00000363832/1-1338 MDRASELLFY VNGRKVIEKN VDPETMLLPY LRKKLRLTGT KYGCGGGGCG ENSBTAP00000012827/1-1339 MEGGAELLFY VNGRKVTEKN VDPETMLLPY LRKKLRLTGT KYGCGGGGCG ENSTTRP00000005932/1-1335 MDGTTELL-Y VNGRKVIEKN VDPETMLLPY LRKKLRLTGT KYGCGAGGCG bmy_21068T0/1-1245 MDGTAELLFY VNGRKVIEKN VDPETMLLPY LRKKLRLTGT KYGCGAGGCG BACU019145/1-1286 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000363832/1-1338 ACTVMISRYN PITKRIRHHP ANACLIPICS LYGAAVTTVE GIGSTHTRIH ENSBTAP00000012827/1-1339 ACTVMISRYN PITKKIRHYP ANACLTPICS LYGAAVTTVE GIDSKENRLG ENSTTRP00000005932/1-1335 ACTVMISRCN PITKRIRHYS ANACLIPICS LYGAAVTTVE GIGSTKTRIH bmy_21068T0/1-1245 ACTVMISRCN PITKRIRHYP ANACLIPICS LYGAAVTTVE GIGSTKTRIH BACU019145/1-1286 ---------- ------RHYP ANACLIPICS LYGAAVTTVE GIGSTKTRIH 101 150 ENSP00000363832/1-1338 PVQERIAKCH GTQCGFCTPG MVMSIYTLLR NHPEPTLDQL TDALGGNLCR ENSBTAP00000012827/1-1339 PVQERIAKCH GTQCGFCTPG MVMSLYTLLR NHPEPTLTQL NDALGGNLCR ENSTTRP00000005932/1-1335 PVQERIAKCH GTQCGFCTPG MVMSIYTLLR NHPEPTLSQL TDALGGNLCR bmy_21068T0/1-1245 PVQK------ ---------- ---------- -------EQI LPRYACNLCR BACU019145/1-1286 PVQERIAKCH GTQCGFCTPG IVMSIY-LLR NHPEPTLSQL TDALGGNLCR 151 200 ENSP00000363832/1-1338 CTGYRPIIDA CKTFCK---- ---------- --TSGCCQSK ENGVCCLDQG ENSBTAP00000012827/1-1339 CTGYRPIINA CKTFCK---- ---------- --TSGCCQSK ENGVCCLDQG ENSTTRP00000005932/1-1335 CTGYRPIIDA CKTFCK---- ---------- --ISGCYQSK ENGVCCLDQG bmy_21068T0/1-1245 CTGYRPIIDA CKTFCK---- ---------- --TSGCCQSK ENGVCCLDQG BACU019145/1-1286 CTGYRPIIDA CKTFCKVKST INSWLFVFFT HWTSGCCQSK ENGVCCLDQG 201 250 ENSP00000363832/1-1338 INGLPEFEEG SKTSPKLFAE EEFLPLDPTQ ELIFPPELMI MAEKQSQRTR ENSBTAP00000012827/1-1339 INGLPEFEEG NETSLKLFSE EEFLPLDPTQ ELIFPPELMT MAEKKTQKTR ENSTTRP00000005932/1-1335 INGLPEFEEG NETNLKLFSE EEFLPLDPTQ ELIFPPELMT MAEKQPQRTR bmy_21068T0/1-1245 INGLPEFEEG HEINLKLFSE EEFLPLDPTQ ELIFPPELMT MAEKQPQRTR BACU019145/1-1286 INGLPEFEGG NETNLKLFSE EEFLPLDPTQ ELIFPPELMT MAEKQPQRTR 251 300 ENSP00000363832/1-1338 VFGSERMMWF SPVTLKELLE FKFKYPQAPV IMGNTSVGPE VKFKGVFHPV ENSBTAP00000012827/1-1339 IFGSDRMTWI SPVTLKELLE AKVKYPQAPV VMGNTSVGPD MKFKGIFHPV ENSTTRP00000005932/1-1335 IFGGDRMTWI SPVTLKELLE AKVKYPQAPV VMGNTSVGPD MKFKGIFHPV bmy_21068T0/1-1245 IFGGDRMTWI SPVTLKELLE AKVKYPQAPV VMGNTSVGLD VKFKGIFHPV BACU019145/1-1286 IFGGDRMTWI SPVTLKELLE AKVKYPQAPV VMGNTSVGPD VKFKDIFHPV 301 350 ENSP00000363832/1-1338 IISPDRIEEL SVVNHAYNGL TLGAGLSLAQ VKDILADVVQ KLPEEKTQMY ENSBTAP00000012827/1-1339 IISPDRIEEL SVVNYTDNGL TLGAAVSLAE VKDILANVTR KLPEEKTQMY ENSTTRP00000005932/1-1335 IISPDRIEEL SVVNYTDNGL TLGAALSLAQ VKDVLANGIL KLPEEKTQTY bmy_21068T0/1-1245 IISPDGIEEL SVVNYTDNGL TLGAALSLAQ VKDILANVIL KLPEEKTQMY BACU019145/1-1286 IISPDRIEEL SVLNYTDNGL TLGAALSLAQ VKDILANVIL KLLEEKTQMY 351 400 ENSP00000363832/1-1338 HALLKHLGTL AGSQIRNMAS LGGHIISRHP DSDLNPILAV GNCTLNLLSK ENSBTAP00000012827/1-1339 HALLKHLETL AGPQIRNMAS LGGHIVSRHP DSDLNPLLAV GNCTLNLLSK ENSTTRP00000005932/1-1335 HALLKHLGTL AGSQIRNMAS LGGHIVSRHP DSDLNPLLAV GNCTLNLLSK bmy_21068T0/1-1245 HALLKHLGTL AGSQIRNMAS LGGHIVSRHP DSDLNPLLAV GNCTLNLLSK BACU019145/1-1286 HALLKHLGTL AGSQIRNMAV W-GHIVSRHP DSDLNPLLAV GNCTLNLLSK 401 450 ENSP00000363832/1-1338 EGKRQIPLNE QFLSKCPNAD LKPQEILVSV NIPYSRK--- -WEFV--SAF ENSBTAP00000012827/1-1339 EGRRQIPLNE QFLRKCPSAD LKPEEILISV NIPYSRK--- -WEFV--SAF ENSTTRP00000005932/1-1335 EGKRQIPLNE QFLRKCPSAD LKPEEILISV NIPYLRK--- -WEFV--SAF bmy_21068T0/1-1245 EGKRQIPLNE QFLRKCPSAD LKPEEILISV NIPDLRKVRM SFQFLGFTSF BACU019145/1-1286 EGKRQIPLNE QFLRKCPSAD LKPEEILISV NIPYSRK--- -WEFV--SAF 451 500 ENSP00000363832/1-1338 RQAQRQENAL AIVNSGMRVF FGEGDGIIRE LCISYGGVGP ATICAKNSCQ ENSBTAP00000012827/1-1339 RQAQRQQNAL AIVNSGMRVC FGKGDGIIRE LSIAYGGVGP TTILANNSCQ ENSTTRP00000005932/1-1335 RQAQRQQNAL AIVNSGMRVF FGGGDGIIRE LSIAYGGVGP TTICAKNSCQ bmy_21068T0/1-1245 RQAQRQQNAL AIVNSGMRVF FGGGDGIIRE LSIAYGGVGP TTVCAKNSCQ BACU019145/1-1286 RQAQRQQNAL AIVNSGMRGF FGGGDGIIRE LSIAYGGVGP TTICAKNSCQ 501 550 ENSP00000363832/1-1338 KLIGRHWNEQ MLDIACRLIL NEVSLLGSAP GGKVEFKRTL IISFLFKFYL ENSBTAP00000012827/1-1339 KLIGRPWNEE MLDAACRLIL DEVSLPGSAP GGRVEFKRTL IVSFLFKFYL ENSTTRP00000005932/1-1335 KLIGRRWDEE MLDTACRLIL DEVSLPGSAP GGRVEFRRTL IISFLFKFYL bmy_21068T0/1-1245 KLIGRRWNEE MLDAACRLIL DEVSLPGSAP GGRVEFRRTL IISFLFKFYL BACU019145/1-1286 KLIGRRWNEE MLDAACRLIL DEVSLPGSAP GGRVEFRRTL IISFLFKFYL 551 600 ENSP00000363832/1-1338 EVSQILKKMD PVHYPSLADK YESALEDLHS KHHCSTLKYQ NIGPKQHPED ENSBTAP00000012827/1-1339 EVSQILKGMD PVHYPSLASK NESALEDLHS RHYWSTLKYQ NADPKQLSQD ENSTTRP00000005932/1-1335 EVSQILKRMD PVHYPSLTDK NESALEELHS RHHWRTLKYQ NADPKQLPED bmy_21068T0/1-1245 EVSQILKRMD PVHYPSLTDK YESALEELHS RHHWRTLKYQ NADPKQLPQD BACU019145/1-1286 EVSQILKRMD PVHYPSLTDK YERALEELHS RHHWRTLKYQ NADPKQLPQD 601 650 ENSP00000363832/1-1338 PIGHPIMHLS GVKHATGEAI YCDDMPLVDQ ELFLTFVTSS RAHAKIVSID ENSBTAP00000012827/1-1339 PVGHPIMHLS GIKHATGEAV YCDDMPVVDR ELFLTFVTSS RAHAKIVSID ENSTTRP00000005932/1-1335 PVGHPIMHLS GIKHATGEAI YCDDMPAVDR ELFLTFVTSS RAHAKIVSVD bmy_21068T0/1-1245 PVGHPIMHLS GIKHATGEAI YCDDMPAVDR ELFLTFVTSS RAHAKIVSVD BACU019145/1-1286 PVGHPIMHLS GIKHATGEAI YCDDMPAVDR ELFLTFVTSS RAHAKIVSVD 651 700 ENSP00000363832/1-1338 LSEALSMPGV VDIMTAEHLS DVNS-FCFFT EAEKFLATDK VFCVGQLVCA ENSBTAP00000012827/1-1339 VSAALSLPGV VDILTGEHLP SITTTFDFLT DADQLLSTDE VSCVGQLVCA ENSTTRP00000005932/1-1335 LSEALSLPGV VDILTEEHLH GINS-FRLLT VPEKLLSTDE VFCVGELVCA bmy_21068T0/1-1245 LSEALSLPGV VDILTEEHLH GINS-FCLLT KPEKLLSTD- ---------- BACU019145/1-1286 LSEALSLPGV VDILTEEHLH GINS-FRLLT KPEKLLSTDE VFCVGELVCA 701 750 ENSP00000363832/1-1338 VLADSEVQAK RAAKRVKIVY QDLEPLILTI EESIQHNSSF KPERKLEYGN ENSBTAP00000012827/1-1339 VIADSEVQAR RAAQQVKIVY QDLEPVILTI EEAIQNKSFF EPERKLEYGN ENSTTRP00000005932/1-1335 VIADSEVQAK RAAQRVKIVY RDSEPLILTI EEAIQHKSFF EQERKLEYGN bmy_21068T0/1-1245 ---------- ---------- ---------- EEAIQHKSFF EQERKLEYGN BACU019145/1-1286 VIADSEVQAK RAAQRVKIVY RDLEPLILTI EEAVQHKSFF EQERKLEYGN 751 800 ENSP00000363832/1-1338 VDEAFKVVDQ ILEGEIHMGG QEHFYMETQS MLVVPKGEDQ EMDVYVSTQF ENSBTAP00000012827/1-1339 VDEAFKVVDQ ILEGEIHMGG QEHFYMETQS MLVVPKGEDR EIDVYVSAQF ENSTTRP00000005932/1-1335 IDEAFKMVDQ ILEGEIHMGG QEHFYMETQS MLVVPKGEDQ EIDVYVSTQF bmy_21068T0/1-1245 IDEAFKMVDQ ILEGEIHMGG QEHFYMETQS MLVVPKGEDQ EIDVYVSTQF BACU019145/1-1286 IDEAFKMVDQ ILEGEIHMGG QEHFYMETQS MLVVPKGEDQ EIDVYVSTQF 801 850 ENSP00000363832/1-1338 PKYIQDIVAS TLKLPANKVM CHVRRVGGAF GGKVLKTGII AAVTAFAANK ENSBTAP00000012827/1-1339 PKYIQDITAS VLKVSANKVM CHVKRVGGAF GGKVTKTGVL AAITAFAANK ENSTTRP00000005932/1-1335 PKYIQDIVAS TLKLPANKVM CHVKRVGGAF GGKVMKTGIM AAITAFAANK bmy_21068T0/1-1245 PKYIQDIVAS TLKLPANKVM CHVKRVGGAF GGKVMKTGIM AAIAAFAANK BACU019145/1-1286 PKYIQDIVAS TLKLPANKVM CHVKRVGGAF GGKVMKTGIM AAIAAFAANK 851 900 ENSP00000363832/1-1338 HGRAVRCVLE RGEDMLITGG RHPYLGKYKA GFMNDGRILA LDMEHYSNAG ENSBTAP00000012827/1-1339 HGRPVRCILE RGEDILITGG RHPYLGKYKA GFMNDGRILA LDMEHYNNAG ENSTTRP00000005932/1-1335 HGRAVRCILE RGEDMLITGG RHPYLGKYKA GFMNDGRILA LDVEHYSNGG bmy_21068T0/1-1245 HGRAVRCILE RGEDMLITGG RHPYLGKYKA GFMNDGRILA LDVEHYSNGG BACU019145/1-1286 HGRAVRCILE RGEDMLITGG RHPYLGKYKA GFMNNGRILA LDVEHYSNGG 901 950 ENSP00000363832/1-1338 ASLDESLFVI EMGLLKMDNA YKFPNLRCRG WACRTNLPSN TAFRGFGFPQ ENSBTAP00000012827/1-1339 AFLDESLFVI EMGLLKLENA YKFPNLRCRG WACRTNLPSN TALRGFGFPQ ENSTTRP00000005932/1-1335 ASLDESLLII EMGLLKMENA YKFPNLRCRA WACRTNLPSN TALRGFGFPQ bmy_21068T0/1-1245 ASLDESLLMI EMGLLKMENA YKFPNLRCRA WACRTNLPSN TALRGFGFPQ BACU019145/1-1286 TSLDESLLMI EMGLLKMENA YKFPNLRCRA WACRTNLPSN TALRGFGFPQ 951 1000 ENSP00000363832/1-1338 AALITESCIT EVAAKCGLSP EKVRIINMYK EIDQTPYKQE INAKNLIQCW ENSBTAP00000012827/1-1339 AGLITEACIT EVAAKCGLPP EKVRMINMYK EIDQTPYKQE INTKNLTQCW ENSTTRP00000005932/1-1335 TGLITESCIT EVAAKCGLSP EKVRTINMYK EIDQTPYKQE INAKNLIQCW bmy_21068T0/1-1245 TGLITESCIT EVAAKCGLSP EKVRTINMYK EIDQTPYKQE INAKNLIQCW BACU019145/1-1286 TGLITESCIT EVAAKCGLPP EKVRTINMYK EIDQTPYKQD INAKNLIQCW 1001 1050 ENSP00000363832/1-1338 RECMAMSSYS LRKVAVEKFN AENYWKKKGL AMVPLKFPVG LGSRAAGQAA ENSBTAP00000012827/1-1339 KECMATSSYT LRKAAVEKFN SENYWKKKGL AMVPLKYPIG LGSVAAGQAA ENSTTRP00000005932/1-1335 KECMAMSSYA LRKAAVEKFN SENCWKKKGL AMVPLKFPVG LGSVAAGQAA bmy_21068T0/1-1245 KECMAMSSYA LRKAAVEKFN SENCWKKKGL AMVPLKFPVG LGSVAAGQAA BACU019145/1-1286 KECMAMSSYA LRKAAVEKFN SENCWKKKGL AMVPLKFPVG LGSVAAGQAA 1051 1100 ENSP00000363832/1-1338 ALVHIYLDGS VLVTHGGIEM GQGVHTKMIQ VVSRELRMPM SNVHLRGTST ENSBTAP00000012827/1-1339 ALVHIYLDGS VLVTHGGIEM GQGVHTKMIQ VASRELRMPL SSIHLRGTST ENSTTRP00000005932/1-1335 ALVHIYLDGS VLVTHGGIEM GQGVHTKMIQ VASRELRMPL SNIHLRGTST bmy_21068T0/1-1245 ALVHIYLDGS VLVTHGGIEM GQGVHTKMIQ VASRELRMPL SNIHLRGTST BACU019145/1-1286 ALVHIYLDGS VLVTHGGIEM GQGVHTKMIQ VASRELRMPL SNIHLRGTST 1101 1150 ENSP00000363832/1-1338 ETVPNANISG GSVVADLNGL AVKDACQTLL KRLEPIISKN PKGTWKDWAQ ENSBTAP00000012827/1-1339 ETIPNTNPSG GSVVADLNGL AVKDACQTLL KRLKPIISKN PKGTWKDWAQ ENSTTRP00000005932/1-1335 ETVPNANISG GSVVADLNGL AVKDACQTLL KRLEPIISKN PGGTWKDWAQ bmy_21068T0/1-1245 ETVPNANISG GSVVADLNGL AVKDACQTLL KRLEPIISKN PGGTWKDWAQ BACU019145/1-1286 ETVPNANISG GSVVADLNGL AVKDACQTLL KRLEPIISKN PGGTWKDWAQ 1151 1200 ENSP00000363832/1-1338 TAFDESINLS AVGYFRGYES DMNWEKGEGQ PFEYFVYGAA CSEVEIDCLT ENSBTAP00000012827/1-1339 AAFNESISLS ATGYFRGYES NINWETGEGH PFEYFVYGAA CSEVEIDCLT ENSTTRP00000005932/1-1335 AAFDESISLS ATGYFRGYES NMNWETGEGR PFEYFVYGAA CSEVEIDCLT bmy_21068T0/1-1245 AAFDESISLS ATGYFRGYES NMNWETGEGR PFEYFVYGAA CSEVEIDCLT BACU019145/1-1286 AAFDESISLS ATGYFRGYES NMNWETGEGR PFEYFVYGAA CSEVEIDCLT 1201 1250 ENSP00000363832/1-1338 GDHKNIRTDI VMDVGCSINP AIDIGQIEGA FIQGMGLYTI EELNYSPQGI ENSBTAP00000012827/1-1339 GAHKNIRTDI VMDVGYSINP ALDVGQIEGA FIQGMGLYTI EELNYSPQGV ENSTTRP00000005932/1-1335 GAHKNIRTDI VMDVGCSINP ALDVGQXXXX XXXXXXXXXX XXXXXXXXXX bmy_21068T0/1-1245 GAHKNIRTDI VMDVGCSINP ALDIGQIEGA FIQGMGLYTI EELNYSPQGV BACU019145/1-1286 GAHKNIRTDI VMDVGCSINP ALDIGQIEGA FIQGMGLYTI EELNYSPQGV 1251 1300 ENSP00000363832/1-1338 LHTRGPDQYK IPAICDMPTE LHIALLPPSQ NSNTLYSSKG LGESGVFLGC ENSBTAP00000012827/1-1339 LYTRGPNQYK IPAICDIPME LHISFLPPSE NSNTLYSSKG LGESGIFLGC ENSTTRP00000005932/1-1335 XXXXXXXXXX XXXXXXXXXX XXXSLLPPSQ NSNTLYSSKG LGESGIFLGC bmy_21068T0/1-1245 LYTRGPNQYK IPAICDIPTE LHVSLLPPSQ NSNTLYSSK- ---------- BACU019145/1-1286 LYTRGPNQYK IPAICDIPTE LHVSLLPPSQ NSNTLYSSKG LGESGVFLGC 1301 1350 ENSP00000363832/1-1338 SVFFAIHDAV SAARQERGLH GPLTLNSPLT PEKIRMACED KFTKMIPRDE ENSBTAP00000012827/1-1339 SVFFAIHDAI RAARQERGLP GPLRLNSPLT PEKIRMACED KFTKMIPRDE ENSTTRP00000005932/1-1335 SVFFAIRDAV SAARQERGL- -GVKLNSPLT PEKIRMACED KFTKMIPRDE bmy_21068T0/1-1245 -------DAV SAARQERGLF GPLKLKSPLT PEKIRMACED KFTKMVNEAF BACU019145/1-1286 SVFFAIQDAV SAARQERGLF GPLKLNSPLT PEKIRMACED KFTKMIPRDE 1351 1400 ENSP00000363832/1-1338 PGSYVPWNVP I ENSBTAP00000012827/1-1339 PGSYVPWSVP I ENSTTRP00000005932/1-1335 PGSYVPWSVP I bmy_21068T0/1-1245 TQKH------ - BACU019145/1-1286 PGSYVPWSVP I